Wall clock time and date at job start Mon Mar 8 2021 13:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47163 * 2 1 4 4 C 1.35895 * 116.99794 * 179.97438 * 3 2 1 5 5 C 1.38612 * 120.02497 * 179.97438 * 4 3 2 6 6 C 1.38664 * 119.89073 * 180.02562 * 5 4 3 7 7 O 1.35894 * 120.02644 * 179.97438 * 6 5 4 8 8 S 1.52200 * 114.00136 * 274.91534 * 7 6 5 9 9 O 1.42103 * 104.27931 * 193.99410 * 8 7 6 10 10 O 1.42097 * 104.27562 * 321.85120 * 8 7 6 11 11 C 1.81403 * 104.45216 * 77.92394 * 8 7 6 12 12 H 1.09005 * 112.84750 * 53.79980 * 11 8 7 13 13 C 1.53775 * 113.61757 * 185.00129 * 11 8 7 14 14 C 1.53776 * 87.08346 * 139.98031 * 13 11 8 15 15 H 1.09001 * 113.61705 * 219.93425 * 14 13 11 16 16 O 1.42898 * 113.61447 * 89.11588 * 14 13 11 17 17 C 1.42899 * 114.00108 * 149.99982 * 16 14 13 18 18 C 1.50703 * 109.47494 * 179.97438 * 17 16 14 19 19 C 1.38232 * 120.00420 * 269.73421 * 18 17 16 20 20 C 1.38237 * 120.00104 * 179.78595 * 19 18 17 21 21 C 1.38234 * 119.99747 * 0.45709 * 20 19 18 22 22 C 1.38232 * 119.99801 * 359.77288 * 21 20 19 23 23 C 1.38232 * 119.99506 * 89.99915 * 18 17 16 24 24 C 1.53780 * 113.61388 * 282.50189 * 11 8 7 25 25 C 1.38745 * 119.94385 * 0.02562 * 6 5 4 26 26 C 1.50703 * 119.97046 * 179.97438 * 25 6 5 27 27 O 1.42900 * 109.47205 * 284.09509 * 26 25 6 28 28 Si 1.86302 * 109.46861 * 164.09835 * 26 25 6 29 29 C 1.38197 * 120.05814 * 0.27644 * 25 6 5 30 30 C 1.38166 * 120.10534 * 359.44844 * 29 25 6 31 31 H 1.08998 * 109.47232 * 300.00213 * 1 2 3 32 32 H 1.08997 * 109.46908 * 60.00146 * 1 2 3 33 33 H 1.09002 * 109.47090 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47232 * 239.99787 * 2 1 3 35 35 H 1.09002 * 109.47500 * 119.99436 * 2 1 3 36 36 H 1.07998 * 120.05593 * 0.04511 * 5 4 3 37 37 H 1.08996 * 113.61336 * 254.53186 * 13 11 8 38 38 H 1.09001 * 113.61603 * 25.43039 * 13 11 8 39 39 H 1.08990 * 109.47388 * 300.00038 * 17 16 14 40 40 H 1.09005 * 109.47324 * 60.00290 * 17 16 14 41 41 H 1.08005 * 119.99869 * 359.97438 * 19 18 17 42 42 H 1.07998 * 119.99578 * 180.25140 * 20 19 18 43 43 H 1.08000 * 119.99509 * 179.78888 * 21 20 19 44 44 H 1.08003 * 119.99425 * 180.02562 * 22 21 20 45 45 H 1.07998 * 120.00681 * 359.97438 * 23 18 17 46 46 H 1.09004 * 113.61528 * 334.56348 * 24 11 8 47 47 H 1.08996 * 113.61648 * 105.46519 * 24 11 8 48 48 H 1.08999 * 109.46823 * 44.10106 * 26 25 6 49 49 H 0.96696 * 114.00397 * 300.00613 * 27 26 25 50 50 H 1.48502 * 109.99904 * 58.68404 * 28 26 25 51 51 H 1.48496 * 109.99842 * 179.97438 * 28 26 25 52 52 H 1.08002 * 119.94885 * 179.70603 * 29 25 6 53 53 H 1.08001 * 119.96889 * 180.25741 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8840 2.8059 0.0000 6 6 5.2591 2.9843 0.0001 7 8 5.7821 4.2386 -0.0010 8 16 5.9106 4.8547 -1.3868 9 8 6.7591 5.9781 -1.1936 10 8 6.3069 3.7713 -2.2165 11 6 4.2282 5.3916 -1.8013 12 1 3.7903 6.0372 -1.0399 13 6 4.0922 5.9440 -3.2299 14 6 2.7461 5.2042 -3.3036 15 1 2.5599 4.7315 -4.2680 16 8 1.6392 5.9825 -2.8443 17 6 0.4002 5.6631 -3.4806 18 6 -0.6918 6.5389 -2.9222 19 6 -1.4197 6.1206 -1.8241 20 6 -2.4184 6.9259 -1.3092 21 6 -2.6954 8.1453 -1.8983 22 6 -1.9705 8.5615 -2.9993 23 6 -0.9690 7.7581 -3.5115 24 6 3.3059 4.2427 -2.2420 25 6 6.1006 1.8812 0.0000 26 6 7.5952 2.0744 -0.0005 27 8 8.0251 2.4605 -1.3075 28 14 8.4277 0.4788 0.4808 29 6 5.5694 0.6054 -0.0058 30 6 4.1996 0.4250 -0.0001 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.2274 3.6634 0.0000 37 1 3.9969 7.0290 -3.2712 38 1 4.8414 5.5573 -3.9208 39 1 0.4887 5.8320 -4.5537 40 1 0.1561 4.6169 -3.2963 41 1 -1.2062 5.1658 -1.3665 42 1 -2.9843 6.6007 -0.4488 43 1 -3.4779 8.7730 -1.4981 44 1 -2.1867 9.5145 -3.4593 45 1 -0.4029 8.0834 -4.3719 46 1 3.8401 3.3908 -2.6627 47 1 2.5758 3.9542 -1.4858 48 1 7.8611 2.8530 0.7144 49 1 7.8208 1.8131 -1.9960 50 1 8.0478 -0.5987 -0.4679 51 1 9.9021 0.6559 0.4834 52 1 6.2261 -0.2520 -0.0106 53 1 3.7868 -0.5730 -0.0004 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79574_15608174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:10:28 Heat of formation + Delta-G solvation = -108.114081 kcal Electronic energy + Delta-G solvation = -40528.319243 eV Core-core repulsion = 35427.308223 eV Total energy + Delta-G solvation = -5101.011020 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.142 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.53496 -40.84482 -40.68653 -39.98442 -38.76030 -38.34821 -37.40961 -37.19337 -36.97592 -33.22929 -32.71803 -31.83715 -31.68753 -31.33697 -27.57824 -27.16114 -26.60597 -26.51675 -25.24741 -23.66423 -23.52793 -23.07004 -22.31533 -21.71437 -21.02200 -19.97637 -19.15302 -18.95301 -18.37559 -17.97108 -17.86902 -17.48798 -17.43143 -17.04324 -16.71907 -16.63410 -16.41638 -16.22095 -16.04546 -15.74196 -15.67732 -15.34149 -15.02647 -14.81364 -14.50879 -14.42092 -14.33175 -14.21449 -14.05898 -13.90145 -13.81166 -13.70601 -13.66618 -13.49968 -13.33614 -13.29898 -13.20609 -13.18552 -12.87213 -12.77643 -12.25333 -12.21224 -12.08399 -12.02490 -11.86536 -11.76881 -11.66390 -11.62077 -11.22147 -10.65078 -10.53908 -10.12813 -9.87163 -9.81412 -9.38696 -4.93204 -1.12414 -0.07597 0.05646 0.28184 0.45128 0.94510 1.24793 1.55023 1.96031 2.05833 2.32253 2.38194 2.46901 2.72465 2.93932 3.12121 3.25468 3.38103 3.42937 3.50418 3.60080 3.73295 3.80926 3.85205 3.88753 3.93245 4.09322 4.11018 4.11325 4.12317 4.18214 4.21705 4.25472 4.31672 4.36664 4.42356 4.43710 4.44988 4.56821 4.61916 4.69049 4.72555 4.75233 4.82231 4.83388 4.86949 4.88661 4.99287 5.03539 5.03769 5.09898 5.10653 5.30120 5.47079 5.50367 5.57673 5.60341 6.04468 6.15875 6.26936 6.59828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.042 3.958 3 O -0.320 6.320 4 C 0.155 3.845 5 C -0.177 4.177 6 C 0.112 3.888 7 O -0.672 6.672 8 S 2.598 3.402 9 O -0.981 6.981 10 O -0.933 6.933 11 C -0.628 4.628 12 H 0.162 0.838 13 C -0.118 4.118 14 C 0.081 3.919 15 H 0.111 0.889 16 O -0.374 6.374 17 C 0.100 3.900 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.113 4.113 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.117 4.117 27 O -0.533 6.533 28 Si 0.790 3.210 29 C -0.062 4.062 30 C -0.176 4.176 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.132 0.868 46 H 0.118 0.882 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.388 0.612 50 H -0.251 1.251 51 H -0.306 1.306 52 H 0.168 0.832 53 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 -8.952 -0.127 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 O -0.234 6.234 4 C 0.109 3.891 5 C -0.198 4.198 6 C 0.070 3.930 7 O -0.631 6.631 8 S 2.697 3.303 9 O -0.979 6.979 10 O -0.932 6.932 11 C -0.738 4.738 12 H 0.180 0.820 13 C -0.156 4.156 14 C 0.022 3.978 15 H 0.128 0.872 16 O -0.294 6.294 17 C 0.025 3.975 18 C -0.108 4.108 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.131 4.131 24 C -0.169 4.169 25 C -0.141 4.141 26 C -0.224 4.224 27 O -0.341 6.341 28 Si 0.692 3.308 29 C -0.080 4.080 30 C -0.195 4.195 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.176 0.824 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.136 0.864 47 H 0.126 0.874 48 H 0.121 0.879 49 H 0.238 0.762 50 H -0.177 1.177 51 H -0.234 1.234 52 H 0.185 0.815 53 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.335 -8.740 0.223 11.412 hybrid contribution -0.357 1.149 -1.098 1.628 sum -7.691 -7.591 -0.874 10.842 Atomic orbital electron populations 1.21823 0.92093 1.04080 1.03136 1.23206 0.96515 0.80130 1.03332 1.86102 1.17501 1.31984 1.87807 1.18528 0.83603 0.92551 0.94462 1.20721 0.92582 0.98434 1.08014 1.17566 0.91083 0.78836 1.05502 1.85657 1.83014 1.36182 1.58293 1.05417 0.77611 0.74200 0.73096 1.93561 1.65299 1.55155 1.83923 1.93600 1.80601 1.50958 1.68007 1.32134 1.21342 1.11286 1.09057 0.82003 1.23049 0.98663 1.03576 0.90337 1.22876 0.85737 0.91555 0.97609 0.87154 1.87954 1.16193 1.60869 1.64336 1.21528 0.81613 0.97816 0.96558 1.19806 0.97346 0.96182 0.97475 1.21316 0.95626 1.00559 0.95299 1.21471 0.98205 0.94851 1.00667 1.21538 0.99888 0.96764 0.96026 1.21460 0.96238 1.00539 0.97069 1.21321 0.97646 0.93717 1.00409 1.23621 0.97993 0.94646 1.00605 1.20388 0.96442 0.92906 1.04314 1.25597 0.93273 1.14853 0.88676 1.86642 1.81660 1.49311 1.16506 0.94104 0.76128 0.72271 0.88308 1.21134 0.95826 0.95474 0.95534 1.21762 0.93255 0.99908 1.04597 0.92104 0.91864 0.88510 0.89955 0.90027 0.82386 0.88337 0.86336 0.90825 0.90701 0.84813 0.84336 0.84427 0.84509 0.85045 0.86355 0.87405 0.87856 0.76192 1.17663 1.23423 0.81517 0.80853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.41 10.28 71.98 0.74 2.15 16 2 C 0.04 -0.38 5.46 71.98 0.39 0.01 16 3 O -0.32 1.06 10.13 -92.37 -0.94 0.12 16 4 C 0.16 -0.37 6.68 22.49 0.15 -0.22 16 5 C -0.18 -0.13 6.83 22.46 0.15 0.02 16 6 C 0.11 0.55 4.59 22.49 0.10 0.65 16 7 O -0.67 -6.27 9.35 -61.45 -0.57 -6.84 16 8 S 2.60 24.33 5.14 -56.49 -0.29 24.04 16 9 O -0.98 -18.52 18.09 -118.57 -2.15 -20.67 16 10 O -0.93 -8.99 12.58 -115.07 -1.45 -10.44 16 11 C -0.63 -1.25 3.90 31.12 0.12 -1.13 16 12 H 0.16 0.19 8.14 -2.38 -0.02 0.17 16 13 C -0.12 0.01 7.50 31.12 0.23 0.24 16 14 C 0.08 -0.16 4.38 31.12 0.14 -0.03 16 15 H 0.11 -0.73 7.87 -2.39 -0.02 -0.75 16 16 O -0.37 -0.66 10.25 -148.98 -1.53 -2.19 16 17 C 0.10 -0.14 5.90 71.24 0.42 0.28 16 18 C -0.11 -0.22 5.51 -19.87 -0.11 -0.33 16 19 C -0.11 -0.17 9.70 22.27 0.22 0.04 16 20 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 21 C -0.12 -0.15 10.05 22.27 0.22 0.07 16 22 C -0.14 -0.22 10.05 22.27 0.22 0.00 16 23 C -0.11 -0.25 9.70 22.27 0.22 -0.03 16 24 C -0.13 0.25 4.95 31.12 0.15 0.41 16 25 C -0.14 -0.35 4.89 -19.75 -0.10 -0.45 16 26 C -0.12 -0.55 2.37 71.24 0.17 -0.39 16 27 O -0.53 -4.90 9.79 -126.30 -1.24 -6.14 16 28 Si 0.79 -1.20 30.29 68.60 2.08 0.88 16 29 C -0.06 0.24 8.65 22.24 0.19 0.43 16 30 C -0.18 1.04 9.04 22.39 0.20 1.24 16 31 H 0.06 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.06 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H 0.08 -0.98 7.66 -2.39 -0.02 -1.00 16 35 H 0.08 -0.95 7.66 -2.39 -0.02 -0.96 16 36 H 0.16 -0.17 5.60 -2.91 -0.02 -0.19 16 37 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 38 H 0.12 -0.34 8.10 -2.39 -0.02 -0.36 16 39 H 0.07 -0.30 8.09 -2.39 -0.02 -0.32 16 40 H 0.07 -0.33 8.08 -2.38 -0.02 -0.34 16 41 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 42 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 43 H 0.14 -0.35 8.06 -2.91 -0.02 -0.38 16 44 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 45 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 46 H 0.12 -0.40 7.47 -2.38 -0.02 -0.41 16 47 H 0.11 -0.32 5.78 -2.39 -0.01 -0.33 16 48 H 0.10 0.70 7.80 -2.39 -0.02 0.68 16 49 H 0.39 1.30 8.58 -74.06 -0.64 0.67 16 50 H -0.25 0.58 6.64 99.48 0.66 1.24 16 51 H -0.31 -2.17 7.11 99.48 0.71 -1.47 16 52 H 0.17 -1.45 4.87 -2.91 -0.01 -1.47 16 53 H 0.17 -2.15 6.29 -2.91 -0.02 -2.17 16 Total: 0.00 -27.05 434.71 -1.71 -28.75 By element: Atomic # 1 Polarization: -10.87 SS G_CDS: 0.31 Total: -10.56 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 4.07 Total: 3.04 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -7.87 Total: -46.15 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: 2.08 Total: 0.88 kcal Atomic # 16 Polarization: 24.33 SS G_CDS: -0.29 Total: 24.04 kcal Total: -27.05 -1.71 -28.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79574_15608174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.360 kcal (2) G-P(sol) polarization free energy of solvation -27.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds