Wall clock time and date at job start Mon Mar 8 2021 13:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47470 * 2 1 4 4 C 1.34223 * 117.00007 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00216 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99733 * 180.02562 * 4 3 2 7 7 H 1.08995 * 112.85352 * 48.79925 * 6 4 3 8 8 C 1.53779 * 113.61071 * 179.97438 * 6 4 3 9 9 C 1.53784 * 87.07871 * 140.06226 * 8 6 4 10 10 F 1.39896 * 113.61490 * 89.20261 * 9 8 6 11 11 C 1.53007 * 113.61226 * 220.01693 * 9 8 6 12 12 S 1.81402 * 109.47123 * 179.97438 * 11 9 8 13 13 O 1.42102 * 110.54192 * 68.37498 * 12 11 9 14 14 O 1.42098 * 110.54194 * 291.62780 * 12 11 9 15 15 O 1.52194 * 104.45071 * 179.97438 * 12 11 9 16 16 C 1.35907 * 113.99887 * 74.99918 * 15 12 11 17 17 C 1.38749 * 120.02376 * 89.99900 * 16 15 12 18 18 C 1.50702 * 119.97572 * 0.02562 * 17 16 15 19 19 O 1.42892 * 109.47242 * 74.71999 * 18 17 16 20 20 Si 1.86298 * 109.46915 * 194.72538 * 18 17 16 21 21 C 1.38196 * 120.05167 * 179.72569 * 17 16 15 22 22 C 1.38161 * 120.11020 * 0.25613 * 21 17 16 23 23 C 1.38792 * 120.05122 * 359.97438 * 22 21 17 24 24 O 1.35901 * 120.02425 * 179.97438 * 23 22 21 25 25 C 1.42903 * 116.99923 * 0.02562 * 24 23 22 26 26 C 1.52997 * 109.46923 * 180.02562 * 25 24 23 27 27 C 1.38614 * 119.94847 * 0.02562 * 23 22 21 28 28 C 1.53777 * 87.08032 * 334.56246 * 9 8 6 29 29 H 1.09005 * 109.47114 * 299.99841 * 1 2 3 30 30 H 1.09003 * 109.47507 * 59.99938 * 1 2 3 31 31 H 1.09005 * 109.47657 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46599 * 240.00060 * 2 1 3 33 33 H 1.08999 * 109.47074 * 120.00311 * 2 1 3 34 34 H 1.09000 * 113.61714 * 25.51748 * 8 6 4 35 35 H 1.08998 * 113.69089 * 254.62168 * 8 6 4 36 36 H 1.08998 * 109.47063 * 59.99985 * 11 9 8 37 37 H 1.09001 * 109.46932 * 300.00050 * 11 9 8 38 38 H 1.09000 * 109.46724 * 314.72045 * 18 17 16 39 39 H 0.96703 * 114.00176 * 180.02562 * 19 18 17 40 40 H 1.48506 * 109.99834 * 178.68053 * 20 18 17 41 41 H 1.48502 * 110.00011 * 299.99318 * 20 18 17 42 42 H 1.08000 * 119.94761 * 180.23156 * 21 17 16 43 43 H 1.08000 * 119.97282 * 179.97438 * 22 21 17 44 44 H 1.09002 * 109.46910 * 299.99486 * 25 24 23 45 45 H 1.08995 * 109.47433 * 59.99749 * 25 24 23 46 46 H 1.09000 * 109.46856 * 299.99930 * 26 25 24 47 47 H 1.08995 * 109.47425 * 59.99556 * 26 25 24 48 48 H 1.09003 * 109.47040 * 180.02562 * 26 25 24 49 49 H 1.07997 * 120.05483 * 179.97438 * 27 23 22 50 50 H 1.09006 * 113.60853 * 139.98209 * 28 9 8 51 51 H 1.08996 * 113.61808 * 270.88218 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.4715 3.5809 0.7563 8 6 5.4582 2.9679 -0.0001 9 6 5.3564 4.1441 -0.9855 10 9 5.2852 5.3939 -0.3610 11 6 6.3985 4.0978 -2.1049 12 16 6.1771 5.5294 -3.1968 13 8 6.5221 6.7305 -2.5204 14 8 4.9594 5.4204 -3.9211 15 8 7.2594 5.3710 -4.2549 16 6 6.9948 4.4077 -5.1764 17 6 6.3044 4.7276 -6.3366 18 6 5.8484 6.1441 -6.5751 19 8 6.9706 6.9512 -6.9371 20 14 4.5949 6.1692 -7.9530 21 6 6.0400 3.7497 -7.2766 22 6 6.4575 2.4504 -7.0613 23 6 7.1443 2.1244 -5.9001 24 8 7.5543 0.8461 -5.6887 25 6 7.2448 -0.1108 -6.7039 26 6 7.7814 -1.4830 -6.2919 27 6 7.4108 3.1035 -4.9558 28 6 3.9862 3.5793 -1.3959 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 5.9127 2.0757 -0.4307 35 1 5.8909 3.2408 0.9624 36 1 6.2738 3.1802 -2.6797 37 1 7.3984 4.1221 -1.6716 38 1 5.3959 6.5381 -5.6650 39 1 6.7507 7.8777 -7.1055 40 1 4.1136 7.5562 -8.1766 41 1 5.1995 5.6343 -9.1995 42 1 5.5057 4.0014 -8.1808 43 1 6.2493 1.6878 -7.7972 44 1 6.1639 -0.1674 -6.8324 45 1 7.7069 0.1935 -7.6430 46 1 8.8623 -1.4267 -6.1630 47 1 7.3190 -1.7870 -5.3529 48 1 7.5458 -2.2128 -7.0665 49 1 7.9447 2.8517 -4.0514 50 1 3.2292 4.3463 -1.5597 51 1 4.0382 2.8542 -2.2080 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79574_16464788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:46 Heat of formation + Delta-G solvation = -234.928116 kcal Electronic energy + Delta-G solvation = -40918.066034 eV Core-core repulsion = 35408.098199 eV Total energy + Delta-G solvation = -5509.967835 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.25234 -42.60978 -41.84996 -40.79500 -39.35653 -38.79451 -38.47583 -37.58499 -37.54395 -37.34095 -33.37136 -32.80782 -32.13341 -31.59625 -31.45572 -27.31133 -26.95527 -26.73609 -25.34137 -24.04000 -23.68779 -23.12494 -22.30516 -21.43522 -20.88135 -20.05579 -19.31997 -19.21527 -18.75138 -18.59258 -18.04559 -17.82408 -17.63076 -17.52880 -17.15935 -17.10704 -17.03585 -16.47325 -16.23928 -16.17249 -15.86269 -15.49129 -15.40445 -15.19555 -14.69254 -14.64248 -14.58146 -14.36686 -14.14094 -14.00724 -13.98657 -13.85948 -13.67976 -13.65060 -13.52066 -13.43426 -13.34859 -13.20969 -13.08404 -12.97670 -12.94404 -12.87469 -12.53494 -12.47282 -12.35916 -12.11598 -11.88144 -11.79159 -11.64734 -11.55565 -11.51465 -11.40787 -10.57055 -10.29825 -9.47246 -4.96423 -1.34791 -0.19453 -0.03538 0.75480 0.99728 1.20193 1.53660 1.56085 1.83785 1.97391 2.21685 2.28986 2.58453 2.67820 2.73411 2.84689 3.15930 3.19022 3.24087 3.46261 3.58435 3.63447 3.72455 3.81485 3.84934 3.99388 4.02142 4.05394 4.05757 4.09247 4.09753 4.17358 4.29221 4.31154 4.33746 4.35410 4.41100 4.43801 4.64647 4.69336 4.72864 4.76818 4.83091 4.83519 4.91681 4.94891 4.96546 5.01763 5.03783 5.14470 5.27322 5.37782 5.41706 6.20398 6.44899 6.60895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.478 3.522 5 O -0.529 6.529 6 C -0.109 4.109 7 H 0.150 0.850 8 C -0.116 4.116 9 C 0.091 3.909 10 F -0.188 7.188 11 C -0.658 4.658 12 S 2.585 3.415 13 O -0.956 6.956 14 O -0.945 6.945 15 O -0.662 6.662 16 C 0.101 3.899 17 C -0.100 4.100 18 C -0.123 4.123 19 O -0.555 6.555 20 Si 0.782 3.218 21 C -0.062 4.062 22 C -0.173 4.173 23 C 0.155 3.845 24 O -0.320 6.320 25 C 0.040 3.960 26 C -0.155 4.155 27 C -0.176 4.176 28 C -0.144 4.144 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.186 0.814 37 H 0.180 0.820 38 H 0.073 0.927 39 H 0.393 0.607 40 H -0.283 1.283 41 H -0.259 1.259 42 H 0.166 0.834 43 H 0.178 0.822 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.169 0.831 50 H 0.115 0.885 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -8.950 -3.399 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.322 3.678 5 O -0.418 6.418 6 C -0.128 4.128 7 H 0.168 0.832 8 C -0.154 4.154 9 C 0.071 3.929 10 F -0.168 7.168 11 C -0.786 4.786 12 S 2.683 3.317 13 O -0.955 6.955 14 O -0.943 6.943 15 O -0.621 6.621 16 C 0.060 3.940 17 C -0.103 4.103 18 C -0.229 4.229 19 O -0.364 6.364 20 Si 0.682 3.318 21 C -0.079 4.079 22 C -0.193 4.193 23 C 0.108 3.892 24 O -0.233 6.233 25 C -0.034 4.034 26 C -0.212 4.212 27 C -0.197 4.197 28 C -0.181 4.181 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.203 0.797 37 H 0.198 0.802 38 H 0.091 0.909 39 H 0.244 0.756 40 H -0.210 1.210 41 H -0.185 1.185 42 H 0.183 0.817 43 H 0.195 0.805 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.117 0.883 49 H 0.187 0.813 50 H 0.133 0.867 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.348 -8.823 -4.170 10.683 hybrid contribution 1.246 1.048 0.916 1.868 sum -3.102 -7.775 -3.254 8.981 Atomic orbital electron populations 1.21838 0.90870 1.04262 1.03737 1.23291 0.96826 0.79102 1.02753 1.86529 1.24022 1.33753 1.83261 1.23558 0.80721 0.92207 0.71325 1.90675 1.61022 1.43711 1.46433 1.22572 0.97383 0.91094 1.01735 0.83240 1.23611 0.93651 0.97205 1.00952 1.21411 0.96346 0.81803 0.93344 1.92983 1.97135 1.42877 1.83832 1.31279 1.11003 1.23571 1.12791 1.05703 0.73662 0.77069 0.75288 1.93630 1.82876 1.43782 1.75183 1.93611 1.46230 1.87146 1.67315 1.85729 1.67216 1.60124 1.49037 1.17670 1.01701 0.84862 0.89803 1.19539 1.00625 0.95654 0.94498 1.25498 0.96683 0.89904 1.10815 1.86549 1.33425 1.25336 1.91138 0.93750 0.81044 0.83052 0.73909 1.21115 0.97183 0.91643 0.97966 1.21802 1.01119 0.98227 0.98104 1.18596 0.93036 0.84574 0.93011 1.86110 1.74770 1.15053 1.47401 1.23244 1.02157 0.87742 0.90216 1.21831 1.02016 0.93868 1.03468 1.20599 1.06089 0.89199 1.03787 1.23887 0.95454 1.02074 0.96732 0.91478 0.91124 0.88520 0.90861 0.91322 0.85402 0.87196 0.79657 0.80201 0.90919 0.75640 1.20973 1.18479 0.81700 0.80489 0.89488 0.90186 0.92157 0.91862 0.88345 0.81310 0.86682 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.75 10.29 71.98 0.74 1.49 16 2 C 0.05 -0.06 6.18 71.98 0.45 0.39 16 3 O -0.36 -0.61 10.22 -51.34 -0.52 -1.14 16 4 C 0.48 0.93 7.49 71.24 0.53 1.47 16 5 O -0.53 -3.60 15.65 21.97 0.34 -3.26 16 6 C -0.11 0.27 4.24 -11.01 -0.05 0.22 16 7 H 0.15 -0.77 8.14 -2.39 -0.02 -0.79 16 8 C -0.12 0.38 6.86 31.12 0.21 0.60 16 9 C 0.09 -0.07 1.62 -10.27 -0.02 -0.08 16 10 F -0.19 -0.98 16.28 44.97 0.73 -0.25 16 11 C -0.66 1.66 5.16 71.98 0.37 2.03 16 12 S 2.58 17.88 4.65 -56.49 -0.26 17.61 16 13 O -0.96 -14.89 17.54 -118.57 -2.08 -16.97 16 14 O -0.94 -6.80 14.24 -118.57 -1.69 -8.49 16 15 O -0.66 -5.48 9.47 -61.60 -0.58 -6.06 16 16 C 0.10 0.56 4.78 22.49 0.11 0.67 16 17 C -0.10 -0.52 4.71 -19.75 -0.09 -0.62 16 18 C -0.12 -0.76 2.22 71.24 0.16 -0.60 16 19 O -0.55 -4.56 12.86 -148.98 -1.92 -6.47 16 20 Si 0.78 -0.10 30.19 68.60 2.07 1.97 16 21 C -0.06 0.06 8.65 22.24 0.19 0.25 16 22 C -0.17 0.71 9.04 22.38 0.20 0.92 16 23 C 0.15 -0.21 6.68 22.49 0.15 -0.06 16 24 O -0.32 0.68 10.13 -92.44 -0.94 -0.26 16 25 C 0.04 -0.31 5.46 71.98 0.39 0.08 16 26 C -0.15 1.21 10.28 71.98 0.74 1.95 16 27 C -0.18 -0.09 8.39 22.46 0.19 0.10 16 28 C -0.14 0.44 7.08 31.12 0.22 0.66 16 29 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 30 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.10 -0.76 8.14 -2.38 -0.02 -0.78 16 32 H 0.07 -0.11 8.13 -2.38 -0.02 -0.13 16 33 H 0.07 -0.04 8.13 -2.39 -0.02 -0.06 16 34 H 0.13 -0.56 7.40 -2.39 -0.02 -0.57 16 35 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.19 -1.57 6.38 -2.39 -0.02 -1.58 16 37 H 0.18 -1.29 8.14 -2.39 -0.02 -1.31 16 38 H 0.07 0.57 5.43 -2.39 -0.01 0.55 16 39 H 0.39 0.14 8.74 -74.06 -0.65 -0.51 16 40 H -0.28 -1.18 7.11 99.48 0.71 -0.48 16 41 H -0.26 -0.31 6.75 99.48 0.67 0.37 16 42 H 0.17 -0.89 4.89 -2.91 -0.01 -0.91 16 43 H 0.18 -1.96 6.29 -2.91 -0.02 -1.97 16 44 H 0.09 -0.98 7.66 -2.39 -0.02 -1.00 16 45 H 0.08 -0.81 7.66 -2.39 -0.02 -0.82 16 46 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 47 H 0.06 -0.40 8.14 -2.39 -0.02 -0.42 16 48 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 49 H 0.17 -0.76 7.47 -2.91 -0.02 -0.79 16 50 H 0.11 -0.44 8.14 -2.38 -0.02 -0.46 16 51 H 0.13 -0.80 7.92 -2.39 -0.02 -0.81 16 Total: 0.00 -29.04 431.75 0.00 -29.04 By element: Atomic # 1 Polarization: -15.53 SS G_CDS: 0.34 Total: -15.19 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 4.50 Total: 9.47 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -7.38 Total: -42.66 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.73 Total: -0.25 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: 2.07 Total: 1.97 kcal Atomic # 16 Polarization: 17.88 SS G_CDS: -0.26 Total: 17.61 kcal Total: -29.04 0.00 -29.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79574_16464788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.885 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds