Wall clock time and date at job start Mon Mar 8 2021 14:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47406 * 2 1 4 4 C 1.35893 * 117.00507 * 179.97438 * 3 2 1 5 5 C 1.38616 * 120.03110 * 180.22919 * 4 3 2 6 6 C 1.38645 * 119.89155 * 180.27832 * 5 4 3 7 7 O 1.35903 * 120.02864 * 179.77438 * 6 5 4 8 8 S 1.52204 * 113.99623 * 269.72362 * 7 6 5 9 9 O 1.42106 * 104.27682 * 318.92608 * 8 7 6 10 10 O 1.42097 * 104.27471 * 191.06966 * 8 7 6 11 11 C 1.81397 * 104.45159 * 74.99772 * 8 7 6 12 12 C 1.53001 * 109.47254 * 180.02562 * 11 8 7 13 13 H 1.08998 * 112.90594 * 43.74527 * 12 11 8 14 14 C 1.53780 * 113.61545 * 175.00080 * 12 11 8 15 15 C 1.53781 * 87.08220 * 89.11291 * 14 12 11 16 16 O 1.42894 * 113.61546 * 270.88597 * 15 14 12 17 17 C 1.42901 * 113.99812 * 294.70359 * 16 15 14 18 18 C 1.52994 * 113.61238 * 140.06465 * 15 14 12 19 19 F 1.39901 * 109.47480 * 54.78191 * 18 15 14 20 20 F 1.39904 * 109.46964 * 174.78434 * 18 15 14 21 21 F 1.39901 * 109.47346 * 294.77785 * 18 15 14 22 22 C 1.53782 * 87.08080 * 25.43233 * 15 14 12 23 23 C 1.38752 * 119.94708 * 359.49093 * 6 5 4 24 24 C 1.50704 * 119.97403 * 180.23326 * 23 6 5 25 25 O 1.42891 * 109.47136 * 75.00308 * 24 23 6 26 26 Si 1.86306 * 109.47037 * 195.00447 * 24 23 6 27 27 C 1.38192 * 120.05317 * 0.25980 * 23 6 5 28 28 C 1.38157 * 120.11034 * 359.97438 * 27 23 6 29 29 H 1.09000 * 109.47259 * 60.00030 * 1 2 3 30 30 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47294 * 299.99990 * 1 2 3 32 32 H 1.09000 * 109.47294 * 240.00010 * 2 1 3 33 33 H 1.09000 * 109.47259 * 119.99969 * 2 1 3 34 34 H 1.08002 * 120.04882 * 0.02615 * 5 4 3 35 35 H 1.08997 * 109.47231 * 59.99919 * 11 8 7 36 36 H 1.09009 * 109.47004 * 299.99912 * 11 8 7 37 37 H 1.09001 * 113.61307 * 203.66415 * 14 12 11 38 38 H 1.09006 * 113.61342 * 334.47885 * 14 12 11 39 39 H 1.08997 * 109.47359 * 176.90305 * 17 16 15 40 40 H 1.09003 * 109.47102 * 296.90318 * 17 16 15 41 41 H 1.08999 * 109.47029 * 56.90021 * 17 16 15 42 42 H 1.08996 * 113.61655 * 220.01815 * 22 15 14 43 43 H 1.09006 * 113.61786 * 89.11448 * 22 15 14 44 44 H 1.09001 * 109.46953 * 314.99952 * 24 23 6 45 45 H 0.96702 * 114.00186 * 59.99746 * 25 24 23 46 46 H 1.48499 * 110.00229 * 58.67934 * 26 24 23 47 47 H 1.48492 * 109.99785 * 180.02562 * 26 24 23 48 48 H 1.08003 * 119.95061 * 180.02562 * 27 23 6 49 49 H 1.08001 * 119.97560 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8840 2.8060 0.0054 6 6 5.2589 2.9844 0.0001 7 8 5.7820 4.2388 0.0002 8 16 6.0208 4.8099 -1.3903 9 8 6.5460 3.7178 -2.1324 10 8 6.7947 5.9793 -1.1606 11 6 4.3660 5.2494 -1.9894 12 6 4.4734 5.8414 -3.3962 13 1 5.1531 5.2836 -4.0404 14 6 3.1113 6.1361 -4.0462 15 6 3.1909 7.5278 -3.3968 16 8 2.6309 7.5793 -2.0831 17 6 1.2217 7.3459 -2.0425 18 6 2.6897 8.6556 -4.3010 19 9 1.3899 8.3666 -4.7302 20 9 2.6886 9.8593 -3.5880 21 9 3.5325 8.7724 -5.4115 22 6 4.7194 7.3593 -3.4086 23 6 6.1005 1.8813 0.0006 24 6 7.5951 2.0745 0.0002 25 8 8.0231 2.4822 1.3011 26 14 8.4284 0.4712 -0.4537 27 6 5.5693 0.6055 0.0010 28 6 4.1996 0.4251 0.0014 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2273 3.6634 0.0091 35 1 3.9200 5.9839 -1.3189 36 1 3.7409 4.3568 -2.0180 37 1 3.1433 6.1601 -5.1355 38 1 2.3004 5.5184 -3.6601 39 1 0.8828 7.3473 -1.0065 40 1 0.7070 8.1326 -2.5941 41 1 1.0002 6.3797 -2.4960 42 1 5.2066 7.7301 -2.5068 43 1 5.1912 7.7177 -4.3236 44 1 7.8621 2.8413 -0.7271 45 1 7.8178 1.8461 2.0000 46 1 7.9675 0.0200 -1.7913 47 1 9.9028 0.6483 -0.4570 48 1 6.2259 -0.2520 0.0019 49 1 3.7868 -0.5729 0.0022 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79574_17541816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:13:14 Heat of formation + Delta-G solvation = -293.473979 kcal Electronic energy + Delta-G solvation = -42905.839093 eV Core-core repulsion = 36901.332900 eV Total energy + Delta-G solvation = -6004.506193 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.113 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -51.20059 -48.74866 -48.62723 -42.58699 -41.61651 -40.88014 -38.81546 -38.28479 -37.50170 -37.38521 -37.11206 -33.47034 -32.16278 -31.62495 -31.45469 -28.57249 -27.91554 -26.99651 -26.74265 -25.49338 -24.12502 -23.54416 -23.14911 -21.65711 -20.86071 -20.15670 -19.76003 -19.51164 -19.30269 -19.02935 -18.70198 -18.26026 -18.00660 -17.46793 -17.36400 -17.21379 -16.80078 -16.63207 -16.27047 -16.02149 -15.80387 -15.66715 -15.60167 -15.53627 -15.38411 -15.18826 -15.08424 -14.88783 -14.81322 -14.74667 -14.67971 -14.54479 -14.46792 -14.00859 -13.96672 -13.85551 -13.63815 -13.46282 -13.35747 -13.25961 -13.21904 -13.14900 -13.06743 -12.97266 -12.54596 -12.39136 -12.28325 -12.27151 -12.11314 -11.95868 -11.88498 -11.56256 -10.94816 -10.45588 -10.35780 -9.55543 -5.07738 -1.19130 -0.21297 -0.08955 0.87507 1.24689 1.50105 1.66672 1.83324 1.92353 2.02653 2.14906 2.40545 2.48139 2.55994 2.73789 2.77323 2.95707 3.14579 3.28286 3.30294 3.38552 3.44540 3.52404 3.55695 3.65946 3.71914 3.73391 3.84121 3.93757 3.96698 4.00526 4.03477 4.07015 4.13090 4.21682 4.25540 4.35272 4.42551 4.44178 4.51291 4.55330 4.62025 4.62327 4.62917 4.67786 4.72248 4.82882 4.93077 4.94670 5.30534 5.54573 6.01239 6.59070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.309 6.309 4 C 0.157 3.843 5 C -0.169 4.169 6 C 0.129 3.871 7 O -0.650 6.650 8 S 2.589 3.411 9 O -0.948 6.948 10 O -0.913 6.913 11 C -0.643 4.643 12 C -0.092 4.092 13 H 0.110 0.890 14 C -0.137 4.137 15 C 0.042 3.958 16 O -0.332 6.332 17 C 0.009 3.991 18 C 0.438 3.562 19 F -0.181 7.181 20 F -0.172 7.172 21 F -0.174 7.174 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.084 4.084 25 O -0.532 6.532 26 Si 0.691 3.309 27 C -0.055 4.055 28 C -0.185 4.185 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.378 0.622 46 H -0.248 1.248 47 H -0.249 1.249 48 H 0.149 0.851 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 -8.880 1.226 10.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.222 6.222 4 C 0.111 3.889 5 C -0.190 4.190 6 C 0.087 3.913 7 O -0.608 6.608 8 S 2.684 3.316 9 O -0.947 6.947 10 O -0.911 6.911 11 C -0.769 4.769 12 C -0.111 4.111 13 H 0.128 0.872 14 C -0.175 4.175 15 C -0.001 4.001 16 O -0.250 6.250 17 C -0.087 4.087 18 C 0.383 3.617 19 F -0.162 7.162 20 F -0.154 7.154 21 F -0.155 7.155 22 C -0.164 4.164 23 C -0.129 4.129 24 C -0.194 4.194 25 O -0.337 6.337 26 Si 0.591 3.409 27 C -0.072 4.072 28 C -0.204 4.204 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.225 0.775 46 H -0.172 1.172 47 H -0.173 1.173 48 H 0.166 0.834 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.774 -8.497 0.679 9.770 hybrid contribution -1.374 1.048 -0.632 1.840 sum -6.148 -7.449 0.047 9.658 Atomic orbital electron populations 1.21802 0.92096 1.03423 1.03824 1.22971 0.96457 0.80933 1.02032 1.86106 1.17761 1.30476 1.87899 1.18485 0.83203 0.92672 0.94568 1.20423 0.92846 0.97361 1.08353 1.17357 0.90425 0.79170 1.04302 1.85756 1.82487 1.35613 1.56964 1.05752 0.77298 0.75195 0.73324 1.93635 1.76680 1.52059 1.72303 1.93675 1.65719 1.49571 1.82140 1.30861 1.26207 1.12675 1.07194 1.21705 0.99847 0.96438 0.93120 0.87159 1.23587 0.98186 0.93678 1.02042 1.23921 0.98256 0.92516 0.85372 1.88057 1.23394 1.91630 1.21906 1.23168 0.79980 1.01070 1.04471 1.21112 0.75667 0.84475 0.80425 1.93193 1.38908 1.93341 1.90790 1.93230 1.96152 1.48163 1.77816 1.93185 1.71007 1.96307 1.55022 1.23507 0.90629 0.95180 1.07128 1.20423 0.97190 0.92238 1.03018 1.25360 0.91863 1.12619 0.89544 1.86597 1.81819 1.49429 1.15826 0.95542 0.80629 0.79513 0.85243 1.20740 0.94831 0.95384 0.96291 1.21478 0.93746 0.99064 1.06136 0.91337 0.89858 0.91251 0.91370 0.91283 0.83115 0.82514 0.83877 0.86807 0.88319 0.87848 0.92687 0.92535 0.87202 0.85576 0.86050 0.77511 1.17241 1.17314 0.83410 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.28 37.15 0.38 1.02 16 2 C 0.05 -0.19 5.46 37.15 0.20 0.01 16 3 O -0.31 0.38 10.13 -19.40 -0.20 0.19 16 4 C 0.16 -0.15 6.68 -39.24 -0.26 -0.42 16 5 C -0.17 0.05 8.40 -39.29 -0.33 -0.28 16 6 C 0.13 0.23 4.77 -39.24 -0.19 0.04 16 7 O -0.65 -1.98 9.47 -51.76 -0.49 -2.47 16 8 S 2.59 6.97 4.92 -107.50 -0.53 6.44 16 9 O -0.95 -3.82 14.23 -67.04 -0.95 -4.78 16 10 O -0.91 -5.42 18.09 -67.04 -1.21 -6.64 16 11 C -0.64 0.73 5.05 37.16 0.19 0.92 16 12 C -0.09 0.12 3.84 -89.81 -0.35 -0.22 16 13 H 0.11 -0.29 8.13 -51.93 -0.42 -0.72 16 14 C -0.14 0.30 6.51 -25.92 -0.17 0.13 16 15 C 0.04 0.00 0.85 -89.81 -0.08 -0.08 16 16 O -0.33 -0.10 8.35 -35.23 -0.29 -0.40 16 17 C 0.01 -0.01 10.33 101.05 1.04 1.03 16 18 C 0.44 0.58 2.51 37.15 0.09 0.67 16 19 F -0.18 -0.24 15.37 2.25 0.03 -0.21 16 20 F -0.17 -0.53 17.09 2.25 0.04 -0.50 16 21 F -0.17 -0.24 15.83 2.25 0.04 -0.20 16 22 C -0.13 0.05 6.89 -25.92 -0.18 -0.13 16 23 C -0.13 -0.15 4.68 -104.45 -0.49 -0.64 16 24 C -0.08 -0.20 2.23 36.01 0.08 -0.12 16 25 O -0.53 -1.15 12.88 -35.23 -0.45 -1.61 16 26 Si 0.69 -0.10 29.91 -169.99 -5.09 -5.18 16 27 C -0.05 0.10 8.65 -39.63 -0.34 -0.25 16 28 C -0.18 0.44 9.04 -39.41 -0.36 0.09 16 29 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 30 H 0.08 -0.45 8.14 -51.93 -0.42 -0.87 16 31 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.07 -0.33 7.66 -51.93 -0.40 -0.73 16 33 H 0.07 -0.34 7.66 -51.93 -0.40 -0.74 16 34 H 0.15 -0.34 7.52 -52.49 -0.39 -0.74 16 35 H 0.16 -0.26 6.12 -51.93 -0.32 -0.57 16 36 H 0.14 -0.48 6.62 -51.92 -0.34 -0.83 16 37 H 0.11 -0.37 8.06 -51.93 -0.42 -0.79 16 38 H 0.10 -0.33 6.65 -51.93 -0.35 -0.67 16 39 H 0.10 -0.31 8.14 -51.93 -0.42 -0.74 16 40 H 0.05 -0.05 6.60 -51.93 -0.34 -0.40 16 41 H 0.06 -0.18 6.60 -51.93 -0.34 -0.52 16 42 H 0.11 0.04 8.10 -51.93 -0.42 -0.38 16 43 H 0.13 -0.23 7.02 -51.93 -0.36 -0.59 16 44 H 0.12 0.56 5.42 -51.93 -0.28 0.28 16 45 H 0.38 -1.07 8.70 45.56 0.40 -0.68 16 46 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 47 H -0.25 -0.74 7.11 56.52 0.40 -0.34 16 48 H 0.15 -0.70 5.12 -52.48 -0.27 -0.97 16 49 H 0.15 -0.76 6.29 -52.49 -0.33 -1.09 16 LS Contribution 411.52 15.07 6.20 6.20 Total: 0.00 -11.34 411.52 -9.53 -20.87 By element: Atomic # 1 Polarization: -7.61 SS G_CDS: -5.88 Total: -13.49 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.75 Total: 1.77 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -3.60 Total: -15.70 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.11 Total: -0.90 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: -5.09 Total: -5.18 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -0.53 Total: 6.44 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -11.34 -9.53 -20.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79574_17541816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -272.607 kcal (2) G-P(sol) polarization free energy of solvation -11.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -283.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -293.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds