Wall clock time and date at job start Mon Mar 8 2021 14:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47406 * 2 1 4 4 C 1.35893 * 117.00507 * 179.97438 * 3 2 1 5 5 C 1.38616 * 120.03110 * 180.22919 * 4 3 2 6 6 C 1.38645 * 119.89155 * 180.27832 * 5 4 3 7 7 O 1.35903 * 120.02864 * 179.77438 * 6 5 4 8 8 S 1.52204 * 113.99623 * 269.72362 * 7 6 5 9 9 O 1.42106 * 104.27682 * 318.92608 * 8 7 6 10 10 O 1.42097 * 104.27471 * 191.06966 * 8 7 6 11 11 C 1.81397 * 104.45159 * 74.99772 * 8 7 6 12 12 C 1.53001 * 109.47254 * 180.02562 * 11 8 7 13 13 H 1.08998 * 112.90594 * 43.74527 * 12 11 8 14 14 C 1.53780 * 113.61545 * 175.00080 * 12 11 8 15 15 C 1.53781 * 87.08220 * 89.11291 * 14 12 11 16 16 O 1.42894 * 113.61546 * 270.88597 * 15 14 12 17 17 C 1.42901 * 113.99812 * 294.70359 * 16 15 14 18 18 C 1.52994 * 113.61238 * 140.06465 * 15 14 12 19 19 F 1.39901 * 109.47480 * 54.78191 * 18 15 14 20 20 F 1.39904 * 109.46964 * 174.78434 * 18 15 14 21 21 F 1.39901 * 109.47346 * 294.77785 * 18 15 14 22 22 C 1.53782 * 87.08080 * 25.43233 * 15 14 12 23 23 C 1.38752 * 119.94708 * 359.49093 * 6 5 4 24 24 C 1.50704 * 119.97403 * 180.23326 * 23 6 5 25 25 O 1.42891 * 109.47136 * 75.00308 * 24 23 6 26 26 Si 1.86306 * 109.47037 * 195.00447 * 24 23 6 27 27 C 1.38192 * 120.05317 * 0.25980 * 23 6 5 28 28 C 1.38157 * 120.11034 * 359.97438 * 27 23 6 29 29 H 1.09000 * 109.47259 * 60.00030 * 1 2 3 30 30 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47294 * 299.99990 * 1 2 3 32 32 H 1.09000 * 109.47294 * 240.00010 * 2 1 3 33 33 H 1.09000 * 109.47259 * 119.99969 * 2 1 3 34 34 H 1.08002 * 120.04882 * 0.02615 * 5 4 3 35 35 H 1.08997 * 109.47231 * 59.99919 * 11 8 7 36 36 H 1.09009 * 109.47004 * 299.99912 * 11 8 7 37 37 H 1.09001 * 113.61307 * 203.66415 * 14 12 11 38 38 H 1.09006 * 113.61342 * 334.47885 * 14 12 11 39 39 H 1.08997 * 109.47359 * 176.90305 * 17 16 15 40 40 H 1.09003 * 109.47102 * 296.90318 * 17 16 15 41 41 H 1.08999 * 109.47029 * 56.90021 * 17 16 15 42 42 H 1.08996 * 113.61655 * 220.01815 * 22 15 14 43 43 H 1.09006 * 113.61786 * 89.11448 * 22 15 14 44 44 H 1.09001 * 109.46953 * 314.99952 * 24 23 6 45 45 H 0.96702 * 114.00186 * 59.99746 * 25 24 23 46 46 H 1.48499 * 110.00229 * 58.67934 * 26 24 23 47 47 H 1.48492 * 109.99785 * 180.02562 * 26 24 23 48 48 H 1.08003 * 119.95061 * 180.02562 * 27 23 6 49 49 H 1.08001 * 119.97560 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8840 2.8060 0.0054 6 6 5.2589 2.9844 0.0001 7 8 5.7820 4.2388 0.0002 8 16 6.0208 4.8099 -1.3903 9 8 6.5460 3.7178 -2.1324 10 8 6.7947 5.9793 -1.1606 11 6 4.3660 5.2494 -1.9894 12 6 4.4734 5.8414 -3.3962 13 1 5.1531 5.2836 -4.0404 14 6 3.1113 6.1361 -4.0462 15 6 3.1909 7.5278 -3.3968 16 8 2.6309 7.5793 -2.0831 17 6 1.2217 7.3459 -2.0425 18 6 2.6897 8.6556 -4.3010 19 9 1.3899 8.3666 -4.7302 20 9 2.6886 9.8593 -3.5880 21 9 3.5325 8.7724 -5.4115 22 6 4.7194 7.3593 -3.4086 23 6 6.1005 1.8813 0.0006 24 6 7.5951 2.0745 0.0002 25 8 8.0231 2.4822 1.3011 26 14 8.4284 0.4712 -0.4537 27 6 5.5693 0.6055 0.0010 28 6 4.1996 0.4251 0.0014 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2273 3.6634 0.0091 35 1 3.9200 5.9839 -1.3189 36 1 3.7409 4.3568 -2.0180 37 1 3.1433 6.1601 -5.1355 38 1 2.3004 5.5184 -3.6601 39 1 0.8828 7.3473 -1.0065 40 1 0.7070 8.1326 -2.5941 41 1 1.0002 6.3797 -2.4960 42 1 5.2066 7.7301 -2.5068 43 1 5.1912 7.7177 -4.3236 44 1 7.8621 2.8413 -0.7271 45 1 7.8178 1.8461 2.0000 46 1 7.9675 0.0200 -1.7913 47 1 9.9028 0.6483 -0.4570 48 1 6.2259 -0.2520 0.0019 49 1 3.7868 -0.5729 0.0022 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79574_17541816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:13:12 Heat of formation + Delta-G solvation = -296.463255 kcal Electronic energy + Delta-G solvation = -42905.968718 eV Core-core repulsion = 36901.332900 eV Total energy + Delta-G solvation = -6004.635818 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.113 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -51.30768 -48.83942 -48.77609 -42.58426 -41.53760 -40.75368 -38.81662 -38.50108 -37.54139 -37.42500 -37.20158 -33.24945 -32.05863 -31.53393 -31.33321 -28.44659 -27.92329 -26.87534 -26.72831 -25.33720 -23.99841 -23.45555 -23.12845 -21.61677 -20.81110 -20.18862 -19.78623 -19.61014 -19.34634 -19.12751 -18.72643 -18.28531 -17.98143 -17.39304 -17.18614 -17.08711 -16.80081 -16.54584 -16.31589 -16.03807 -15.80941 -15.72566 -15.64510 -15.50069 -15.40755 -15.21823 -15.11935 -14.96230 -14.92030 -14.77134 -14.57129 -14.48249 -14.39879 -14.03314 -13.99239 -13.80027 -13.59331 -13.44773 -13.35210 -13.31921 -13.24063 -13.03480 -12.89607 -12.86362 -12.41910 -12.28536 -12.26603 -12.22519 -12.04813 -11.94281 -11.63552 -11.50690 -10.88933 -10.52928 -10.24935 -9.43368 -5.10621 -1.27937 -0.14624 0.01364 0.80592 1.20353 1.46166 1.63292 1.97103 2.01313 2.02457 2.27788 2.34202 2.48366 2.53799 2.70016 2.77114 3.03314 3.17830 3.24243 3.40068 3.44258 3.46907 3.62145 3.64436 3.83195 3.86902 4.05660 4.09225 4.12837 4.15945 4.21669 4.22473 4.28487 4.34839 4.35640 4.40525 4.44497 4.47411 4.59607 4.67910 4.74327 4.77579 4.79527 4.84263 4.86407 4.99502 4.99772 5.05369 5.30221 5.42742 5.65404 6.24484 6.73933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.041 3.959 3 O -0.321 6.321 4 C 0.154 3.846 5 C -0.174 4.174 6 C 0.100 3.900 7 O -0.663 6.663 8 S 2.583 3.417 9 O -0.970 6.970 10 O -0.962 6.962 11 C -0.619 4.619 12 C -0.098 4.098 13 H 0.124 0.876 14 C -0.125 4.125 15 C 0.038 3.962 16 O -0.346 6.346 17 C 0.001 3.999 18 C 0.434 3.566 19 F -0.181 7.181 20 F -0.188 7.188 21 F -0.176 7.176 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.111 4.111 25 O -0.555 6.555 26 Si 0.805 3.195 27 C -0.052 4.052 28 C -0.174 4.174 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.089 0.911 45 H 0.397 0.603 46 H -0.270 1.270 47 H -0.298 1.298 48 H 0.179 0.821 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 -11.663 1.001 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.033 4.033 3 O -0.234 6.234 4 C 0.107 3.893 5 C -0.195 4.195 6 C 0.059 3.941 7 O -0.622 6.622 8 S 2.683 3.317 9 O -0.968 6.968 10 O -0.961 6.961 11 C -0.749 4.749 12 C -0.118 4.118 13 H 0.142 0.858 14 C -0.163 4.163 15 C -0.004 4.004 16 O -0.264 6.264 17 C -0.094 4.094 18 C 0.379 3.621 19 F -0.162 7.162 20 F -0.169 7.169 21 F -0.157 7.157 22 C -0.177 4.177 23 C -0.149 4.149 24 C -0.218 4.218 25 O -0.363 6.363 26 Si 0.708 3.292 27 C -0.069 4.069 28 C -0.193 4.193 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.189 0.811 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.154 0.846 44 H 0.106 0.894 45 H 0.247 0.753 46 H -0.196 1.196 47 H -0.226 1.226 48 H 0.196 0.804 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.848 -11.276 0.494 13.202 hybrid contribution -0.817 1.939 -0.546 2.173 sum -7.666 -9.337 -0.052 12.081 Atomic orbital electron populations 1.21829 0.92137 1.04131 1.03112 1.23238 0.96508 0.80031 1.03524 1.86102 1.17430 1.32161 1.87746 1.18606 0.83688 0.92731 0.94244 1.20560 0.92124 0.98576 1.08233 1.17723 0.91476 0.78683 1.06232 1.85718 1.83024 1.36638 1.56813 1.05735 0.78687 0.74161 0.73121 1.93592 1.78199 1.52375 1.72645 1.93605 1.68480 1.51002 1.82977 1.30657 1.22727 1.14067 1.07425 1.21829 1.01054 0.95787 0.93081 0.85812 1.23647 0.97836 0.92014 1.02782 1.24047 0.98069 0.93010 0.85299 1.88047 1.24463 1.91799 1.22135 1.23351 0.78924 1.01738 1.05401 1.21432 0.75684 0.84414 0.80558 1.93187 1.38956 1.93268 1.90816 1.93194 1.96231 1.49284 1.78187 1.93175 1.71050 1.96324 1.55164 1.23648 0.90800 0.96231 1.07022 1.20541 0.96382 0.93514 1.04451 1.25721 0.93720 1.13429 0.88962 1.86536 1.82144 1.51016 1.16633 0.94414 0.76015 0.76345 0.82439 1.21052 0.95740 0.94920 0.95196 1.21859 0.93163 1.00227 1.04034 0.91938 0.88450 0.92087 0.89794 0.89782 0.81820 0.81839 0.81055 0.85353 0.86450 0.86672 0.93635 0.90601 0.88678 0.84600 0.89388 0.75260 1.19642 1.22583 0.80446 0.80248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.54 10.28 71.98 0.74 2.28 16 2 C 0.04 -0.41 5.46 71.98 0.39 -0.02 16 3 O -0.32 1.42 10.13 -92.35 -0.94 0.49 16 4 C 0.15 -0.56 6.68 22.49 0.15 -0.41 16 5 C -0.17 0.17 8.40 22.46 0.19 0.36 16 6 C 0.10 0.44 4.77 22.49 0.11 0.54 16 7 O -0.66 -5.58 9.47 -61.55 -0.58 -6.16 16 8 S 2.58 19.77 4.92 -56.49 -0.28 19.49 16 9 O -0.97 -10.06 14.23 -118.57 -1.69 -11.74 16 10 O -0.96 -14.98 18.09 -118.57 -2.15 -17.13 16 11 C -0.62 1.32 5.05 71.98 0.36 1.68 16 12 C -0.10 0.28 3.84 -10.27 -0.04 0.25 16 13 H 0.12 -0.68 8.13 -2.39 -0.02 -0.70 16 14 C -0.12 0.71 6.51 31.12 0.20 0.91 16 15 C 0.04 -0.01 0.85 -10.27 -0.01 -0.01 16 16 O -0.35 -0.24 8.35 -148.98 -1.24 -1.48 16 17 C 0.00 0.00 10.33 113.37 1.17 1.17 16 18 C 0.43 1.31 2.51 71.98 0.18 1.49 16 19 F -0.18 -0.46 15.37 44.97 0.69 0.23 16 20 F -0.19 -1.39 17.09 44.97 0.77 -0.62 16 21 F -0.18 -0.54 15.83 44.97 0.71 0.17 16 22 C -0.14 -0.03 6.89 31.12 0.21 0.19 16 23 C -0.15 -0.40 4.68 -19.75 -0.09 -0.50 16 24 C -0.11 -0.69 2.23 71.24 0.16 -0.53 16 25 O -0.55 -3.45 12.88 -148.98 -1.92 -5.37 16 26 Si 0.81 -0.11 29.91 68.60 2.05 1.94 16 27 C -0.05 0.27 8.65 22.24 0.19 0.46 16 28 C -0.17 1.28 9.04 22.38 0.20 1.48 16 29 H 0.06 -0.54 8.14 -2.39 -0.02 -0.55 16 30 H 0.10 -1.24 8.14 -2.39 -0.02 -1.26 16 31 H 0.06 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.08 -1.10 7.66 -2.39 -0.02 -1.12 16 33 H 0.08 -1.10 7.66 -2.39 -0.02 -1.11 16 34 H 0.16 -0.82 7.52 -2.91 -0.02 -0.85 16 35 H 0.16 -0.48 6.12 -2.39 -0.01 -0.50 16 36 H 0.17 -1.37 6.62 -2.39 -0.02 -1.39 16 37 H 0.13 -1.06 8.06 -2.39 -0.02 -1.08 16 38 H 0.12 -1.10 6.65 -2.38 -0.02 -1.11 16 39 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H 0.04 -0.09 6.60 -2.39 -0.02 -0.10 16 41 H 0.08 -0.61 6.60 -2.39 -0.02 -0.63 16 42 H 0.09 0.30 8.10 -2.39 -0.02 0.28 16 43 H 0.14 -0.35 7.02 -2.38 -0.02 -0.36 16 44 H 0.09 1.11 5.42 -2.39 -0.01 1.10 16 45 H 0.40 -1.89 8.70 -74.06 -0.64 -2.53 16 46 H -0.27 -0.89 7.11 99.48 0.71 -0.18 16 47 H -0.30 -2.26 7.11 99.48 0.71 -1.55 16 48 H 0.18 -2.16 5.12 -2.91 -0.01 -2.17 16 49 H 0.18 -2.60 6.29 -2.91 -0.02 -2.62 16 Total: 0.00 -30.61 411.52 -0.01 -30.62 By element: Atomic # 1 Polarization: -20.20 SS G_CDS: 0.43 Total: -19.76 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 4.13 Total: 9.33 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -8.51 Total: -41.40 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 2.17 Total: -0.22 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: 2.05 Total: 1.94 kcal Atomic # 16 Polarization: 19.77 SS G_CDS: -0.28 Total: 19.49 kcal Total: -30.61 -0.01 -30.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79574_17541816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -265.841 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -296.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -296.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds