Wall clock time and date at job start Mon Mar 8 2021 13:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 O 1.42905 * 109.47066 * 180.02562 * 3 2 1 5 5 C 1.35899 * 116.99927 * 180.02562 * 4 3 2 6 6 C 1.38752 * 120.02723 * 0.02562 * 5 4 3 7 7 C 1.38205 * 120.05124 * 179.72751 * 6 5 4 8 8 C 1.38158 * 120.10771 * 0.51027 * 7 6 5 9 9 C 1.50699 * 119.97178 * 179.76737 * 8 7 6 10 10 O 1.42895 * 109.47044 * 254.72591 * 9 8 7 11 11 Si 1.86300 * 109.46944 * 14.72518 * 9 8 7 12 12 H 1.48503 * 109.46942 * 180.02562 * 11 9 8 13 13 H 1.48503 * 109.47276 * 299.99703 * 11 9 8 14 14 H 1.48494 * 109.47372 * 59.99692 * 11 9 8 15 15 C 1.38793 * 120.05268 * 359.49006 * 8 7 6 16 16 O 1.35901 * 120.02560 * 180.27744 * 15 8 7 17 17 S 1.52201 * 113.99932 * 89.99900 * 16 15 8 18 18 O 1.42100 * 104.27742 * 191.07198 * 17 16 15 19 19 O 1.42101 * 104.27739 * 318.92722 * 17 16 15 20 20 C 1.81395 * 104.44797 * 75.00416 * 17 16 15 21 21 C 1.53003 * 109.47181 * 180.02562 * 20 17 16 22 22 C 1.53000 * 109.47416 * 179.97438 * 21 20 17 23 23 Si 1.86297 * 109.47361 * 179.97438 * 22 21 20 24 24 C 1.86302 * 109.47132 * 59.99864 * 23 22 21 25 25 C 1.86301 * 109.47241 * 180.02562 * 23 22 21 26 26 C 1.86306 * 109.46925 * 300.00081 * 23 22 21 27 27 C 1.38607 * 119.94998 * 0.25711 * 15 8 7 28 28 H 1.09005 * 109.47236 * 300.00132 * 1 2 3 29 29 H 1.08996 * 109.47460 * 59.99913 * 1 2 3 30 30 H 1.09003 * 109.47354 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46605 * 239.99795 * 2 1 3 32 32 H 1.09003 * 109.46683 * 119.99770 * 2 1 3 33 33 H 1.09005 * 109.47717 * 60.00058 * 3 2 1 34 34 H 1.09006 * 109.47396 * 299.99929 * 3 2 1 35 35 H 1.08002 * 119.97624 * 359.97438 * 6 5 4 36 36 H 1.07999 * 119.94536 * 180.27772 * 7 6 5 37 37 H 1.09001 * 109.47358 * 134.71877 * 9 8 7 38 38 H 0.96705 * 114.00010 * 180.02562 * 10 9 8 39 39 H 1.09004 * 109.47099 * 299.99686 * 20 17 16 40 40 H 1.08992 * 109.47673 * 59.99853 * 20 17 16 41 41 H 1.09004 * 109.46731 * 299.99768 * 21 20 17 42 42 H 1.08996 * 109.47525 * 59.99420 * 21 20 17 43 43 H 1.08997 * 109.46815 * 300.00238 * 22 21 20 44 44 H 1.09005 * 109.46646 * 59.99991 * 22 21 20 45 45 H 1.09004 * 109.46828 * 60.00341 * 24 23 22 46 46 H 1.09001 * 109.46783 * 179.97438 * 24 23 22 47 47 H 1.08990 * 109.47110 * 300.00393 * 24 23 22 48 48 H 1.08996 * 109.47308 * 59.99565 * 25 23 22 49 49 H 1.09000 * 109.47242 * 180.02562 * 25 23 22 50 50 H 1.08996 * 109.46801 * 299.99798 * 25 23 22 51 51 H 1.09003 * 109.47091 * 60.00092 * 26 23 22 52 52 H 1.09000 * 109.46750 * 179.97438 * 26 23 22 53 53 H 1.08992 * 109.47204 * 299.99601 * 26 23 22 54 54 H 1.08000 * 120.06005 * 179.97438 * 27 15 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3308 3.8174 0.0014 7 6 3.9577 5.0490 0.0076 8 6 5.3372 5.1246 0.0016 9 6 6.0175 6.4693 0.0030 10 8 6.5433 6.7384 -1.2982 11 14 4.7841 7.7887 0.4595 12 1 5.4544 9.1139 0.4603 13 1 3.6770 7.7952 -0.5302 14 1 4.2376 7.5090 1.8116 15 6 6.0969 3.9631 0.0000 16 8 7.4539 4.0380 -0.0002 17 16 8.0723 4.0705 1.3901 18 8 9.4327 4.4108 1.1607 19 8 7.2179 4.9286 2.1337 20 6 7.9352 2.3629 1.9864 21 6 8.5294 2.2646 3.3929 22 6 8.4133 0.8244 3.8962 23 14 9.1375 0.7046 5.6085 24 6 8.2087 1.8405 6.7565 25 6 8.9968 -1.0492 6.2210 26 6 10.9321 1.2026 5.5599 27 6 5.4706 2.7265 -0.0009 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2523 3.7609 0.0018 36 1 3.3682 5.9539 0.0133 37 1 6.8301 6.4646 0.7295 38 1 6.9965 7.5896 -1.3709 39 1 6.8853 2.0711 2.0148 40 1 8.4788 1.6987 1.3148 41 1 9.5793 2.5565 3.3650 42 1 7.9855 2.9288 4.0645 43 1 7.3634 0.5330 3.9242 44 1 8.9571 0.1600 3.2247 45 1 7.1587 1.5490 6.7849 46 1 8.6322 1.7700 7.7584 47 1 8.2914 2.8664 6.3980 48 1 9.5404 -1.7134 5.5492 49 1 9.4201 -1.1192 7.2230 50 1 7.9469 -1.3409 6.2493 51 1 11.0149 2.2287 5.2014 52 1 11.3557 1.1330 6.5618 53 1 11.4755 0.5381 4.8883 54 1 6.0601 1.8216 -0.0025 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79575_14927650.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:13:19 Heat of formation + Delta-G solvation = -197.887028 kcal Electronic energy + Delta-G solvation = -33701.269903 eV Core-core repulsion = 29275.972208 eV Total energy + Delta-G solvation = -4425.297694 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 390.158 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.56080 -40.81309 -38.75842 -38.41337 -37.52284 -37.28378 -35.89151 -34.87762 -32.44098 -31.55118 -29.61621 -28.40612 -28.30730 -28.24535 -27.90007 -26.26810 -24.97151 -23.12447 -22.96929 -22.36002 -21.38092 -19.96054 -19.19580 -18.75430 -18.50281 -17.96939 -17.43379 -17.30465 -17.04192 -16.67428 -16.10572 -15.86067 -15.68959 -15.27497 -15.16968 -14.80436 -14.61165 -14.27935 -14.24495 -14.13650 -14.03606 -13.98594 -13.85548 -13.66144 -13.58396 -13.54318 -13.41869 -13.39140 -13.28065 -13.15494 -13.05446 -13.01555 -12.98334 -12.98276 -12.75800 -12.39365 -12.17911 -12.11754 -11.95476 -11.83781 -11.79930 -11.71882 -11.52141 -10.71538 -10.68595 -10.45903 -10.40356 -10.26460 -9.46950 -1.19266 -0.16370 -0.04031 0.84975 1.04310 1.38710 1.48129 1.82544 1.89233 1.96384 2.00846 2.01513 2.21463 2.44341 2.72744 2.77363 3.25263 3.44351 3.52239 3.64404 3.67308 3.75882 3.84380 3.96404 3.97085 4.04413 4.07925 4.14655 4.29388 4.31989 4.38645 4.56234 4.56720 4.61170 4.67046 4.75082 4.77905 4.79438 4.81703 4.83653 4.86578 4.87127 4.87611 4.88592 4.95650 5.01492 5.07554 5.15594 5.19332 5.31593 5.41688 5.44559 5.59536 5.66432 5.67083 6.18062 6.66687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.045 3.955 4 O -0.316 6.316 5 C 0.153 3.847 6 C -0.177 4.177 7 C -0.072 4.072 8 C -0.107 4.107 9 C -0.118 4.118 10 O -0.558 6.558 11 Si 0.981 3.019 12 H -0.250 1.250 13 H -0.234 1.234 14 H -0.246 1.246 15 C 0.108 3.892 16 O -0.663 6.663 17 S 2.572 3.428 18 O -0.965 6.965 19 O -0.967 6.967 20 C -0.627 4.627 21 C -0.119 4.119 22 C -0.412 4.412 23 Si 1.068 2.932 24 C -0.471 4.471 25 C -0.462 4.462 26 C -0.474 4.474 27 C -0.172 4.172 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.175 0.825 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.396 0.604 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.066 0.934 52 H 0.066 0.934 53 H 0.070 0.930 54 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 -3.921 1.801 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.029 4.029 4 O -0.230 6.230 5 C 0.107 3.893 6 C -0.196 4.196 7 C -0.090 4.090 8 C -0.110 4.110 9 C -0.225 4.225 10 O -0.367 6.367 11 Si 0.799 3.201 12 H -0.174 1.174 13 H -0.158 1.158 14 H -0.170 1.170 15 C 0.067 3.933 16 O -0.622 6.622 17 S 2.673 3.327 18 O -0.964 6.964 19 O -0.965 6.965 20 C -0.758 4.758 21 C -0.158 4.158 22 C -0.497 4.497 23 Si 1.260 2.740 24 C -0.577 4.577 25 C -0.569 4.569 26 C -0.580 4.580 27 C -0.193 4.193 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.192 0.808 36 H 0.176 0.824 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.090 0.910 51 H 0.085 0.915 52 H 0.086 0.914 53 H 0.089 0.911 54 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.497 -3.322 1.658 8.365 hybrid contribution 1.106 -0.211 -0.045 1.127 sum -6.390 -3.532 1.613 7.478 Atomic orbital electron populations 1.21698 0.93214 1.03034 1.02799 1.21492 0.96806 0.94130 1.03596 1.23308 0.76114 1.00136 1.03325 1.86077 1.23522 1.25592 1.87814 1.18571 0.90957 0.85358 0.94454 1.21756 1.02569 0.90695 1.04591 1.21089 0.91941 0.99756 0.96183 1.19597 0.94429 0.93450 1.03516 1.25261 1.06306 1.01980 0.88990 1.86464 1.77533 1.44179 1.28533 0.85291 0.77959 0.75981 0.80829 1.17411 1.15753 1.16951 1.17591 0.76162 0.93943 1.05616 1.85676 1.26809 1.92311 1.57413 1.06058 0.73901 0.79675 0.73036 1.93601 1.35826 1.83856 1.83066 1.93594 1.66248 1.64399 1.72259 1.30807 1.13598 1.21763 1.09661 1.21231 1.02111 1.01076 0.91393 1.26262 1.08903 0.96169 1.18389 0.78312 0.65039 0.65592 0.65030 1.26393 1.09096 1.11042 1.11200 1.26260 1.04673 1.19753 1.06201 1.26438 1.21438 1.05699 1.04432 1.20606 0.93664 0.97068 1.07925 0.91690 0.91880 0.91556 0.91214 0.90895 0.89867 0.90272 0.80769 0.82398 0.91132 0.75359 0.82368 0.81944 0.89678 0.89221 0.88874 0.89018 0.90921 0.91438 0.91368 0.91149 0.91535 0.91026 0.91464 0.91430 0.91090 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.16 9.91 71.98 0.71 1.87 16 2 C -0.12 0.75 6.30 30.59 0.19 0.94 16 3 C 0.05 -0.27 4.74 71.98 0.34 0.07 16 4 O -0.32 0.28 10.14 -92.41 -0.94 -0.66 16 5 C 0.15 0.08 6.68 22.49 0.15 0.23 16 6 C -0.18 0.28 9.04 22.38 0.20 0.48 16 7 C -0.07 -0.13 8.65 22.24 0.19 0.06 16 8 C -0.11 -0.79 4.71 -19.75 -0.09 -0.88 16 9 C -0.12 -0.85 2.22 71.24 0.16 -0.69 16 10 O -0.56 -3.93 12.86 -148.98 -1.92 -5.85 16 11 Si 0.98 1.76 25.48 68.60 1.75 3.50 16 12 H -0.25 -0.38 7.11 99.48 0.71 0.33 16 13 H -0.23 0.07 6.74 99.48 0.67 0.74 16 14 H -0.25 -0.60 7.11 99.48 0.71 0.10 16 15 C 0.11 0.78 4.78 22.49 0.11 0.89 16 16 O -0.66 -5.96 9.47 -61.53 -0.58 -6.54 16 17 S 2.57 18.81 4.93 -56.49 -0.28 18.53 16 18 O -0.97 -13.93 18.09 -118.57 -2.15 -16.08 16 19 O -0.97 -9.61 14.24 -118.57 -1.69 -11.30 16 20 C -0.63 1.33 5.46 71.98 0.39 1.73 16 21 C -0.12 0.30 4.59 30.60 0.14 0.44 16 22 C -0.41 2.40 4.45 71.98 0.32 2.72 16 23 Si 1.07 -6.47 12.19 68.60 0.84 -5.64 16 24 C -0.47 1.45 8.65 113.37 0.98 2.43 16 25 C -0.46 1.86 8.65 113.37 0.98 2.85 16 26 C -0.47 1.14 8.65 113.37 0.98 2.12 16 27 C -0.17 -0.38 8.39 22.46 0.19 -0.19 16 28 H 0.06 -0.55 8.14 -2.38 -0.02 -0.57 16 29 H 0.06 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.08 -0.74 7.66 -2.38 -0.02 -0.76 16 34 H 0.08 -0.65 7.66 -2.38 -0.02 -0.66 16 35 H 0.18 -1.47 6.29 -2.91 -0.02 -1.49 16 36 H 0.16 -0.39 4.87 -2.91 -0.01 -0.40 16 37 H 0.07 0.64 5.42 -2.39 -0.01 0.62 16 38 H 0.40 -0.79 8.74 -74.05 -0.65 -1.44 16 39 H 0.16 -0.96 6.60 -2.39 -0.02 -0.98 16 40 H 0.16 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.08 -0.26 7.79 -2.38 -0.02 -0.28 16 42 H 0.09 -0.35 7.79 -2.39 -0.02 -0.37 16 43 H 0.09 -0.71 7.96 -2.39 -0.02 -0.73 16 44 H 0.09 -0.67 7.96 -2.38 -0.02 -0.69 16 45 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 46 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 47 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 48 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 49 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 50 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 51 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 52 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 53 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 54 H 0.17 -0.51 7.49 -2.91 -0.02 -0.53 16 Total: 0.00 -22.86 440.67 1.94 -20.91 By element: Atomic # 1 Polarization: -12.93 SS G_CDS: 0.96 Total: -11.97 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 5.95 Total: 15.08 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -7.27 Total: -40.42 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: 2.58 Total: -2.13 kcal Atomic # 16 Polarization: 18.81 SS G_CDS: -0.28 Total: 18.53 kcal Total: -22.86 1.94 -20.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79575_14927650.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.974 kcal (2) G-P(sol) polarization free energy of solvation -22.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds