Wall clock time and date at job start Mon Mar 8 2021 11:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47426 * 2 1 4 4 O 1.42894 * 109.47431 * 179.97438 * 3 2 1 5 5 C 1.35897 * 117.00444 * 179.97438 * 4 3 2 6 6 C 1.38605 * 120.03188 * 179.97438 * 5 4 3 7 7 C 1.38659 * 119.89412 * 179.76894 * 6 5 4 8 8 O 1.35899 * 120.02913 * 180.27621 * 7 6 5 9 9 S 1.52196 * 113.99832 * 270.23107 * 8 7 6 10 10 O 1.42100 * 104.27863 * 191.07430 * 9 8 7 11 11 O 1.42098 * 104.27590 * 318.93134 * 9 8 7 12 12 C 1.81403 * 104.44766 * 75.00074 * 9 8 7 13 13 C 1.53010 * 109.46846 * 180.02562 * 12 9 8 14 14 F 1.39897 * 112.85023 * 53.80185 * 13 12 9 15 15 C 1.53782 * 113.61029 * 185.00204 * 13 12 9 16 16 C 1.53781 * 87.07942 * 139.97830 * 15 13 12 17 17 H 1.09002 * 113.61410 * 89.11345 * 16 15 13 18 18 C 1.50698 * 113.61794 * 219.93081 * 16 15 13 19 19 O 1.20831 * 119.99479 * 0.02562 * 18 16 15 20 20 O 1.34224 * 120.00228 * 180.02562 * 18 16 15 21 21 C 1.45199 * 116.99810 * 180.02562 * 20 18 16 22 22 C 1.53001 * 109.46993 * 180.02562 * 21 20 18 23 23 C 1.53777 * 87.08331 * 334.56694 * 16 15 13 24 24 C 1.38750 * 119.94295 * 0.50452 * 7 6 5 25 25 C 1.50699 * 119.97431 * 179.76759 * 24 7 6 26 26 O 1.42907 * 109.46603 * 74.73007 * 25 24 7 27 27 Si 1.86298 * 109.47032 * 194.72311 * 25 24 7 28 28 C 1.38200 * 120.05273 * 359.49394 * 24 7 6 29 29 C 1.38157 * 120.10940 * 0.25673 * 28 24 7 30 30 H 1.09002 * 109.46811 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46757 * 300.00468 * 1 2 3 33 33 H 1.09003 * 109.47556 * 239.99929 * 2 1 3 34 34 H 1.09002 * 109.46811 * 119.99989 * 2 1 3 35 35 H 1.09003 * 109.46811 * 59.99473 * 3 2 1 36 36 H 1.09002 * 109.47116 * 299.99801 * 3 2 1 37 37 H 1.08001 * 120.05559 * 0.02562 * 6 5 4 38 38 H 1.08995 * 109.47347 * 299.99564 * 12 9 8 39 39 H 1.08999 * 109.47060 * 60.00080 * 12 9 8 40 40 H 1.09005 * 113.61115 * 254.52553 * 15 13 12 41 41 H 1.09000 * 113.61579 * 25.43280 * 15 13 12 42 42 H 1.08998 * 109.47766 * 299.99969 * 21 20 18 43 43 H 1.09003 * 109.47081 * 60.00332 * 21 20 18 44 44 H 1.09004 * 109.47171 * 299.99908 * 22 21 20 45 45 H 1.08994 * 109.47165 * 60.00037 * 22 21 20 46 46 H 1.09003 * 109.46902 * 180.02562 * 22 21 20 47 47 H 1.08996 * 113.61663 * 270.88508 * 23 16 15 48 48 H 1.08996 * 113.61981 * 139.98019 * 23 16 15 49 49 H 1.08996 * 109.47117 * 314.72920 * 25 24 7 50 50 H 0.96697 * 114.00527 * 59.99993 * 26 25 24 51 51 H 1.48506 * 109.99834 * 58.68765 * 27 25 24 52 52 H 1.48502 * 110.00011 * 180.02562 * 27 25 24 53 53 H 1.07999 * 119.94826 * 180.23152 * 28 24 7 54 54 H 1.08005 * 119.97064 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0861 2.6533 0.0001 6 6 5.4702 2.7265 0.0012 7 6 6.0968 3.9634 -0.0041 8 8 7.4537 4.0384 -0.0087 9 16 8.0767 4.0706 1.3795 10 8 9.4363 4.4110 1.1458 11 8 7.2246 4.9284 2.1261 12 6 7.9414 2.3628 1.9760 13 6 8.5402 2.2643 3.3806 14 9 7.9881 3.1897 4.2727 15 6 8.5859 0.8292 3.9314 16 6 9.9692 1.1777 4.5060 17 1 9.9310 1.6020 5.5093 18 6 10.9737 0.0614 4.3806 19 8 10.6542 -0.9837 3.8651 20 8 12.2233 0.2281 4.8414 21 6 13.1375 -0.8892 4.6864 22 6 14.5029 -0.5153 5.2669 23 6 10.0777 2.2345 3.3941 24 6 5.3373 5.1246 0.0001 25 6 6.0177 6.4692 -0.0004 26 8 6.5448 6.7358 -1.3017 27 14 4.7837 7.7896 0.4521 28 6 3.9574 5.0490 -0.0010 29 6 3.3307 3.8177 -0.0009 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 6.0597 1.8216 0.0020 38 1 6.8917 2.0710 2.0078 39 1 8.4829 1.6987 1.3024 40 1 7.8336 0.6303 4.6947 41 1 8.6156 0.0644 3.1554 42 1 12.7437 -1.7571 5.2153 43 1 13.2450 -1.1267 3.6280 44 1 14.8970 0.3527 4.7383 45 1 14.3951 -0.2781 6.3253 46 1 15.1893 -1.3539 5.1501 47 1 10.5151 1.8539 2.4711 48 1 10.5296 3.1700 3.7234 49 1 6.8295 6.4659 0.7269 50 1 5.8769 6.7537 -2.0006 51 1 4.2045 7.5065 1.7899 52 1 5.4421 9.1207 0.4545 53 1 3.3679 5.9538 -0.0015 54 1 2.2522 3.7612 -0.0013 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79575_16464788.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:02:47 Heat of formation + Delta-G solvation = -245.509877 kcal Electronic energy + Delta-G solvation = -42426.172025 eV Core-core repulsion = 36760.207712 eV Total energy + Delta-G solvation = -5665.964314 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -49.29162 -42.64330 -41.92261 -40.83194 -39.43443 -38.88087 -38.57203 -37.61608 -37.60551 -37.29190 -34.84182 -32.93421 -32.52176 -31.86517 -31.50261 -27.90337 -27.39115 -27.03649 -26.32542 -24.98045 -23.98463 -23.19020 -22.68247 -22.25550 -21.55900 -20.95030 -20.07817 -19.37711 -19.22097 -18.84261 -18.36894 -18.02180 -17.87353 -17.70366 -17.48555 -17.29227 -17.18469 -16.80040 -16.46218 -16.42381 -16.13142 -15.92090 -15.63918 -15.47415 -15.18289 -15.11653 -14.76133 -14.70686 -14.63063 -14.37276 -14.30354 -14.21886 -13.92809 -13.77638 -13.72892 -13.62938 -13.55958 -13.47860 -13.31293 -13.16612 -13.03155 -13.00699 -12.91658 -12.59559 -12.57022 -12.51818 -12.35933 -12.15769 -12.10246 -11.95351 -11.82040 -11.62148 -11.58550 -11.52599 -11.47483 -10.55195 -10.29440 -9.47111 -5.12541 -1.42447 -0.20169 -0.02121 0.71337 0.91999 1.18447 1.49390 1.62162 1.93975 1.96879 2.20948 2.24238 2.53523 2.54632 2.66095 2.82508 3.07862 3.11799 3.36602 3.42911 3.51300 3.58718 3.70174 3.76554 3.79188 3.93169 3.98076 3.99045 3.99156 4.00599 4.03628 4.10366 4.23242 4.26506 4.28373 4.31988 4.33704 4.34288 4.53532 4.58201 4.59174 4.66300 4.69766 4.76980 4.77332 4.79642 4.85518 4.94186 4.98050 5.01519 5.08253 5.17818 5.21325 5.32894 5.35088 5.43282 6.20516 6.53358 6.72724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.046 3.954 4 O -0.319 6.319 5 C 0.153 3.847 6 C -0.176 4.176 7 C 0.097 3.903 8 O -0.657 6.657 9 S 2.581 3.419 10 O -0.951 6.951 11 O -0.962 6.962 12 C -0.656 4.656 13 C 0.093 3.907 14 F -0.184 7.184 15 C -0.111 4.111 16 C -0.107 4.107 17 H 0.152 0.848 18 C 0.477 3.523 19 O -0.528 6.528 20 O -0.361 6.361 21 C 0.053 3.947 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.144 4.144 25 C -0.111 4.111 26 O -0.553 6.553 27 Si 0.807 3.193 28 C -0.052 4.052 29 C -0.173 4.173 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.194 0.806 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.126 0.874 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.398 0.602 51 H -0.273 1.273 52 H -0.296 1.296 53 H 0.180 0.820 54 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 -4.311 -1.501 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.028 4.028 4 O -0.233 6.233 5 C 0.107 3.893 6 C -0.197 4.197 7 C 0.056 3.944 8 O -0.616 6.616 9 S 2.680 3.320 10 O -0.949 6.949 11 O -0.961 6.961 12 C -0.784 4.784 13 C 0.073 3.927 14 F -0.164 7.164 15 C -0.149 4.149 16 C -0.126 4.126 17 H 0.170 0.830 18 C 0.321 3.679 19 O -0.417 6.417 20 O -0.277 6.277 21 C -0.020 4.020 22 C -0.207 4.207 23 C -0.194 4.194 24 C -0.147 4.147 25 C -0.218 4.218 26 O -0.362 6.362 27 Si 0.709 3.291 28 C -0.069 4.069 29 C -0.192 4.192 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.185 0.815 38 H 0.195 0.805 39 H 0.211 0.789 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.144 0.856 48 H 0.126 0.874 49 H 0.106 0.894 50 H 0.248 0.752 51 H -0.199 1.199 52 H -0.224 1.224 53 H 0.197 0.803 54 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.077 -3.474 -0.952 8.844 hybrid contribution 1.146 -0.981 0.417 1.565 sum -6.931 -4.455 -0.535 8.257 Atomic orbital electron populations 1.21694 0.93171 1.02958 1.02907 1.21499 0.96860 0.94397 1.03430 1.23312 0.75975 0.99952 1.03572 1.86079 1.23653 1.25788 1.87752 1.18612 0.90837 0.85609 0.94282 1.20595 0.93948 0.96903 1.08252 1.17725 0.75824 0.94373 1.06489 1.85731 1.27368 1.92108 1.56404 1.05765 0.74345 0.78593 0.73269 1.93621 1.35460 1.82911 1.82942 1.93608 1.66607 1.63460 1.72400 1.31266 1.15086 1.26148 1.05903 1.21364 0.94115 0.91871 0.85313 1.92984 1.86759 1.67303 1.69352 1.23598 0.95130 0.93407 1.02787 1.22571 0.92908 0.93501 1.03583 0.83023 1.23571 0.82286 0.88299 0.73755 1.90672 1.79656 1.29581 1.41818 1.86530 1.22075 1.45036 1.74076 1.23309 0.89360 0.87139 1.02221 1.21842 0.93040 1.03793 1.02050 1.23945 0.93378 1.01292 1.00780 1.20562 0.95331 0.94645 1.04194 1.25711 1.06399 1.00680 0.89037 1.86534 1.39446 1.93686 1.16512 0.94448 0.79563 0.72724 0.82350 1.21070 0.91073 0.99626 0.95134 1.21873 1.02830 0.90613 1.03849 0.91592 0.91784 0.91721 0.91217 0.91288 0.89901 0.89631 0.81525 0.80508 0.78880 0.86694 0.85292 0.90991 0.91054 0.91412 0.91285 0.88373 0.85589 0.87362 0.89392 0.75203 1.19936 1.22414 0.80319 0.80232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.32 9.91 71.98 0.71 2.04 16 2 C -0.12 0.90 6.30 30.60 0.19 1.09 16 3 C 0.05 -0.37 4.74 71.98 0.34 -0.03 16 4 O -0.32 0.93 10.13 -92.39 -0.94 -0.01 16 5 C 0.15 -0.36 6.68 22.49 0.15 -0.21 16 6 C -0.18 0.01 8.39 22.46 0.19 0.20 16 7 C 0.10 0.50 4.78 22.49 0.11 0.61 16 8 O -0.66 -5.54 9.47 -61.50 -0.58 -6.13 16 9 S 2.58 22.56 4.68 -56.49 -0.26 22.30 16 10 O -0.95 -14.18 17.96 -118.57 -2.13 -16.31 16 11 O -0.96 -12.63 13.78 -118.57 -1.63 -14.27 16 12 C -0.66 0.98 5.11 71.99 0.37 1.35 16 13 C 0.09 0.06 1.57 -10.26 -0.02 0.04 16 14 F -0.18 -1.01 16.51 44.97 0.74 -0.27 16 15 C -0.11 0.29 6.86 31.12 0.21 0.50 16 16 C -0.11 0.07 4.23 -11.02 -0.05 0.03 16 17 H 0.15 -0.57 8.14 -2.39 -0.02 -0.59 16 18 C 0.48 1.90 7.49 71.24 0.53 2.43 16 19 O -0.53 -4.49 15.65 21.95 0.34 -4.15 16 20 O -0.36 -1.46 10.22 -51.35 -0.52 -1.99 16 21 C 0.05 0.06 6.19 71.98 0.45 0.50 16 22 C -0.15 0.43 10.29 71.98 0.74 1.17 16 23 C -0.16 -0.06 6.91 31.12 0.21 0.16 16 24 C -0.14 -0.53 4.68 -19.75 -0.09 -0.62 16 25 C -0.11 -0.77 2.23 71.24 0.16 -0.61 16 26 O -0.55 -3.48 12.88 -148.98 -1.92 -5.40 16 27 Si 0.81 0.54 29.91 68.60 2.05 2.59 16 28 C -0.05 0.21 8.65 22.24 0.19 0.40 16 29 C -0.17 1.06 9.04 22.38 0.20 1.26 16 30 H 0.07 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.06 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.06 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.08 -0.90 7.66 -2.39 -0.02 -0.92 16 36 H 0.09 -0.97 7.66 -2.39 -0.02 -0.99 16 37 H 0.17 -0.80 7.47 -2.91 -0.02 -0.82 16 38 H 0.18 -1.08 6.58 -2.39 -0.02 -1.10 16 39 H 0.19 -1.59 8.05 -2.39 -0.02 -1.61 16 40 H 0.11 -0.57 8.14 -2.38 -0.02 -0.59 16 41 H 0.13 -0.48 7.39 -2.39 -0.02 -0.50 16 42 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 43 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 44 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 45 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.13 -0.22 7.99 -2.39 -0.02 -0.23 16 48 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 49 H 0.09 1.19 5.43 -2.39 -0.01 1.17 16 50 H 0.40 -1.88 8.70 -74.06 -0.64 -2.53 16 51 H -0.27 -1.27 7.11 99.48 0.71 -0.56 16 52 H -0.30 -2.41 7.11 99.48 0.71 -1.71 16 53 H 0.18 -2.02 5.12 -2.91 -0.01 -2.03 16 54 H 0.18 -2.37 6.29 -2.91 -0.02 -2.39 16 Total: 0.00 -32.34 453.65 0.10 -32.25 By element: Atomic # 1 Polarization: -19.27 SS G_CDS: 0.34 Total: -18.93 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.61 Total: 10.31 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -7.38 Total: -48.25 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.74 Total: -0.27 kcal Atomic # 14 Polarization: 0.54 SS G_CDS: 2.05 Total: 2.59 kcal Atomic # 16 Polarization: 22.56 SS G_CDS: -0.26 Total: 22.30 kcal Total: -32.34 0.10 -32.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79575_16464788.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.263 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds