Wall clock time and date at job start Mon Mar 8 2021 11:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 O 1.42904 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.35899 * 116.99842 * 180.02562 * 4 3 2 6 6 C 1.38614 * 120.02321 * 179.97438 * 5 4 3 7 7 C 1.38654 * 119.89040 * 180.02562 * 6 5 4 8 8 O 1.35899 * 120.02979 * 179.97438 * 7 6 5 9 9 S 1.52199 * 114.00690 * 274.60330 * 8 7 6 10 10 O 1.42092 * 104.27911 * 190.84698 * 9 8 7 11 11 O 1.42108 * 104.27481 * 318.70336 * 9 8 7 12 12 C 1.81401 * 104.44817 * 74.76949 * 9 8 7 13 13 C 1.52998 * 109.46890 * 184.08420 * 12 9 8 14 14 H 1.08999 * 112.85392 * 317.22662 * 13 12 9 15 15 C 1.53778 * 113.61958 * 88.53616 * 13 12 9 16 16 C 1.53781 * 87.08385 * 89.11195 * 15 13 12 17 17 O 1.42892 * 113.69432 * 270.88086 * 16 15 13 18 18 C 1.42897 * 114.00532 * 162.77210 * 17 16 15 19 19 C 1.52998 * 113.61517 * 139.97871 * 16 15 13 20 20 F 1.39901 * 109.47257 * 327.51871 * 19 16 15 21 21 F 1.39904 * 109.46435 * 87.51244 * 19 16 15 22 22 F 1.39892 * 109.47546 * 207.50767 * 19 16 15 23 23 C 1.53787 * 87.07917 * 25.43784 * 16 15 13 24 24 C 1.38750 * 119.94310 * 0.02562 * 7 6 5 25 25 C 1.50700 * 119.97179 * 179.97438 * 24 7 6 26 26 O 1.42903 * 109.47196 * 75.38789 * 25 24 7 27 27 Si 1.86301 * 109.47240 * 195.38912 * 25 24 7 28 28 C 1.38194 * 120.05849 * 0.02562 * 24 7 6 29 29 C 1.38158 * 120.10391 * 359.68705 * 28 24 7 30 30 H 1.08995 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46609 * 299.99590 * 1 2 3 32 32 H 1.08996 * 109.47312 * 59.99848 * 1 2 3 33 33 H 1.09003 * 109.46609 * 240.00410 * 2 1 3 34 34 H 1.08995 * 109.47615 * 120.00605 * 2 1 3 35 35 H 1.09006 * 109.47288 * 300.00236 * 3 2 1 36 36 H 1.09000 * 109.47406 * 60.00278 * 3 2 1 37 37 H 1.08000 * 120.05647 * 359.97438 * 6 5 4 38 38 H 1.08993 * 109.47366 * 304.08294 * 12 9 8 39 39 H 1.08997 * 109.46930 * 64.08327 * 12 9 8 40 40 H 1.08999 * 113.61974 * 203.66876 * 15 13 12 41 41 H 1.09003 * 113.61270 * 334.56800 * 15 13 12 42 42 H 1.08999 * 109.46819 * 305.30934 * 18 17 16 43 43 H 1.09009 * 109.47183 * 65.30396 * 18 17 16 44 44 H 1.08999 * 109.47732 * 185.30989 * 18 17 16 45 45 H 1.08996 * 113.61182 * 220.01876 * 23 16 15 46 46 H 1.08999 * 113.69110 * 89.12323 * 23 16 15 47 47 H 1.09005 * 109.47252 * 315.38955 * 25 24 7 48 48 H 0.96700 * 113.99560 * 65.12867 * 26 25 24 49 49 H 1.48501 * 110.00074 * 179.97438 * 27 25 24 50 50 H 1.48501 * 109.99979 * 301.31718 * 27 25 24 51 51 H 1.07998 * 119.95021 * 179.97438 * 28 24 7 52 52 H 1.08002 * 119.96802 * 180.29482 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0860 2.6534 -0.0001 6 6 5.4702 2.7266 -0.0001 7 6 6.0967 3.9635 0.0009 8 8 7.4536 4.0385 0.0014 9 16 8.0776 3.9604 1.3874 10 8 9.4383 4.3130 1.1796 11 8 7.2291 4.7608 2.1992 12 6 7.9363 2.2119 1.8495 13 6 8.4429 2.0201 3.2804 14 1 9.3593 2.5744 3.4829 15 6 7.3551 2.2128 4.3501 16 6 7.0518 0.7128 4.1995 17 8 6.0802 0.4216 3.1930 18 6 6.0701 -0.9441 2.7726 19 6 6.7612 0.0099 5.5271 20 9 7.5088 0.6101 6.5459 21 9 5.3981 0.1181 5.8232 22 9 7.1106 -1.3409 5.4259 23 6 8.5037 0.5477 3.7202 24 6 5.3371 5.1246 0.0024 25 6 6.0175 6.4693 0.0041 26 8 6.5357 6.7426 -1.2993 27 14 4.7867 7.7873 0.4720 28 6 3.9573 5.0490 0.0035 29 6 3.3307 3.8177 -0.0035 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5139 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 6.0597 1.8217 -0.0001 38 1 6.8927 1.9033 1.7891 39 1 8.5342 1.6067 1.1681 40 1 7.7490 2.4825 5.3299 41 1 6.5370 2.8579 4.0296 42 1 7.0707 -1.2325 2.4506 43 1 5.7590 -1.5778 3.6032 44 1 5.3729 -1.0639 1.9433 45 1 8.6129 -0.1514 2.8911 46 1 9.2128 0.3619 4.5268 47 1 6.8344 6.4623 0.7258 48 1 5.8560 6.8417 -1.9799 49 1 5.4455 9.1183 0.4779 50 1 3.6521 7.7859 -0.4861 51 1 3.3677 5.9539 0.0051 52 1 2.2521 3.7613 -0.0075 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79575_17541816.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:48:59 Heat of formation + Delta-G solvation = -298.081377 kcal Electronic energy + Delta-G solvation = -46155.527488 eV Core-core repulsion = 39995.283885 eV Total energy + Delta-G solvation = -6160.243604 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.129 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -51.23983 -48.77659 -48.70544 -42.55468 -41.45969 -40.76769 -38.86053 -38.45108 -37.49948 -37.38928 -37.22802 -34.83922 -32.53612 -31.66072 -31.46557 -28.39393 -27.89561 -27.82477 -26.79036 -26.30648 -24.98851 -23.63545 -23.09993 -22.52189 -21.60615 -20.75099 -20.06134 -19.79638 -19.52861 -19.30711 -19.00907 -18.75808 -18.32050 -17.90025 -17.33681 -17.25953 -17.14707 -16.82162 -16.53246 -16.33377 -16.11163 -15.82237 -15.72500 -15.65474 -15.58061 -15.35289 -15.20664 -15.12768 -15.08251 -14.89622 -14.83918 -14.72069 -14.64100 -14.39402 -14.19065 -14.10077 -13.85178 -13.51420 -13.46446 -13.34569 -13.28060 -13.24148 -13.12786 -12.94865 -12.91200 -12.61632 -12.37193 -12.31590 -12.20533 -12.15446 -12.10179 -11.92679 -11.66526 -11.51323 -11.43175 -10.81830 -10.73194 -10.23531 -9.42961 -4.94333 -1.21054 -0.12481 0.02015 0.86271 1.20027 1.48791 1.53557 1.89402 2.00094 2.08582 2.27377 2.40948 2.55767 2.61326 2.77980 2.85076 3.13633 3.20094 3.31558 3.32720 3.45970 3.51377 3.55335 3.68067 3.81675 3.88161 3.99181 4.00658 4.07438 4.14087 4.20480 4.27191 4.33170 4.34637 4.38136 4.43692 4.47636 4.54465 4.58545 4.59418 4.66534 4.73036 4.77097 4.80573 4.82006 4.83953 4.88823 5.01076 5.05499 5.17162 5.21312 5.34658 5.45317 5.72618 6.23426 6.46110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.047 3.953 4 O -0.315 6.315 5 C 0.158 3.842 6 C -0.176 4.176 7 C 0.109 3.891 8 O -0.666 6.666 9 S 2.584 3.416 10 O -0.967 6.967 11 O -0.955 6.955 12 C -0.626 4.626 13 C -0.098 4.098 14 H 0.119 0.881 15 C -0.131 4.131 16 C 0.039 3.961 17 O -0.338 6.338 18 C 0.003 3.997 19 C 0.433 3.567 20 F -0.177 7.177 21 F -0.186 7.186 22 F -0.184 7.184 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.114 4.114 26 O -0.546 6.546 27 Si 0.779 3.221 28 C -0.061 4.061 29 C -0.178 4.178 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.134 0.866 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.125 0.875 47 H 0.097 0.903 48 H 0.387 0.613 49 H -0.298 1.298 50 H -0.238 1.238 51 H 0.169 0.831 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 -4.773 -0.430 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.027 4.027 4 O -0.229 6.229 5 C 0.111 3.889 6 C -0.197 4.197 7 C 0.067 3.933 8 O -0.625 6.625 9 S 2.684 3.316 10 O -0.965 6.965 11 O -0.954 6.954 12 C -0.756 4.756 13 C -0.117 4.117 14 H 0.137 0.863 15 C -0.168 4.168 16 C -0.003 4.003 17 O -0.256 6.256 18 C -0.092 4.092 19 C 0.379 3.621 20 F -0.158 7.158 21 F -0.167 7.167 22 F -0.165 7.165 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.221 4.221 26 O -0.354 6.354 27 Si 0.680 3.320 28 C -0.079 4.079 29 C -0.197 4.197 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.191 0.809 40 H 0.153 0.847 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.144 0.856 47 H 0.115 0.885 48 H 0.237 0.763 49 H -0.225 1.225 50 H -0.162 1.162 51 H 0.186 0.814 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.293 -3.454 -0.585 8.091 hybrid contribution 0.633 -1.225 -0.709 1.550 sum -6.660 -4.679 -1.295 8.241 Atomic orbital electron populations 1.21696 0.93355 1.02951 1.02774 1.21477 0.96706 0.94279 1.03489 1.23267 0.76233 0.99979 1.03211 1.86071 1.23361 1.25748 1.87694 1.18574 0.90851 0.85478 0.93949 1.20585 0.93870 0.96875 1.08344 1.17619 0.75933 0.94109 1.05594 1.85703 1.27140 1.91843 1.57817 1.05715 0.73907 0.79156 0.72859 1.93611 1.36121 1.83262 1.83494 1.93607 1.66258 1.66439 1.69070 1.30767 1.14439 1.23840 1.06529 1.21795 1.00081 1.00046 0.89820 0.86288 1.23586 0.99756 0.91190 1.02237 1.24038 0.92905 0.98863 0.84519 1.88054 1.55439 1.29059 1.53083 1.23296 1.03986 0.80880 1.01024 1.21463 0.74224 0.77580 0.88849 1.93175 1.76551 1.83233 1.62842 1.93192 1.33200 1.95813 1.94521 1.93183 1.91827 1.35191 1.96326 1.23670 0.92624 0.96501 1.04093 1.20377 0.94846 0.94630 1.04403 1.25549 1.07924 1.00720 0.87860 1.86646 1.37737 1.92983 1.18080 0.93590 0.76542 0.72998 0.88912 1.21140 0.91631 0.99726 0.95396 1.21779 1.02505 0.90833 1.04620 0.91690 0.91794 0.91815 0.91165 0.91074 0.90230 0.90060 0.81863 0.81851 0.80905 0.84750 0.87771 0.91129 0.93728 0.86785 0.86836 0.85639 0.88489 0.76301 1.22519 1.16231 0.81375 0.80920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.25 9.91 71.98 0.71 1.96 16 2 C -0.12 0.86 6.30 30.59 0.19 1.05 16 3 C 0.05 -0.34 4.74 71.98 0.34 0.00 16 4 O -0.32 0.80 10.13 -92.41 -0.94 -0.14 16 5 C 0.16 -0.25 6.68 22.49 0.15 -0.10 16 6 C -0.18 -0.07 8.31 22.46 0.19 0.12 16 7 C 0.11 0.53 4.71 22.49 0.11 0.63 16 8 O -0.67 -5.21 9.41 -61.50 -0.58 -5.79 16 9 S 2.58 15.84 4.96 -56.49 -0.28 15.56 16 10 O -0.97 -13.45 18.09 -118.57 -2.15 -15.60 16 11 O -0.96 -7.66 14.88 -118.57 -1.76 -9.43 16 12 C -0.63 2.01 5.03 71.98 0.36 2.37 16 13 C -0.10 0.40 3.85 -10.27 -0.04 0.36 16 14 H 0.12 -0.72 8.12 -2.39 -0.02 -0.74 16 15 C -0.13 0.35 6.89 31.12 0.21 0.56 16 16 C 0.04 -0.09 0.85 -10.27 -0.01 -0.09 16 17 O -0.34 0.62 8.38 -148.98 -1.25 -0.63 16 18 C 0.00 -0.02 10.29 113.37 1.17 1.15 16 19 C 0.43 0.55 2.52 71.98 0.18 0.73 16 20 F -0.18 -0.28 15.82 44.97 0.71 0.43 16 21 F -0.19 -0.91 17.10 44.97 0.77 -0.14 16 22 F -0.18 -0.30 15.42 44.97 0.69 0.40 16 23 C -0.13 0.82 6.50 31.13 0.20 1.02 16 24 C -0.14 -0.49 4.80 -19.75 -0.09 -0.59 16 25 C -0.11 -0.69 2.31 71.24 0.16 -0.52 16 26 O -0.55 -4.40 12.93 -148.98 -1.93 -6.32 16 27 Si 0.78 -0.27 30.18 68.60 2.07 1.80 16 28 C -0.06 0.17 8.65 22.24 0.19 0.37 16 29 C -0.18 0.84 9.04 22.38 0.20 1.04 16 30 H 0.06 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.06 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.06 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.08 -0.78 7.65 -2.38 -0.02 -0.79 16 36 H 0.08 -0.78 7.67 -2.39 -0.02 -0.80 16 37 H 0.16 -0.63 6.91 -2.91 -0.02 -0.65 16 38 H 0.16 -0.73 3.92 -2.39 -0.01 -0.73 16 39 H 0.17 -1.51 8.14 -2.39 -0.02 -1.53 16 40 H 0.13 -0.67 7.01 -2.39 -0.02 -0.69 16 41 H 0.10 -0.15 8.10 -2.39 -0.02 -0.17 16 42 H 0.07 -0.59 6.54 -2.39 -0.02 -0.60 16 43 H 0.04 -0.14 6.73 -2.38 -0.02 -0.16 16 44 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.11 -1.05 6.63 -2.39 -0.02 -1.07 16 46 H 0.13 -1.05 8.06 -2.39 -0.02 -1.07 16 47 H 0.10 0.96 5.97 -2.38 -0.01 0.95 16 48 H 0.39 -0.23 8.61 -74.06 -0.64 -0.87 16 49 H -0.30 -2.18 7.11 99.48 0.71 -1.47 16 50 H -0.24 0.69 6.67 99.48 0.66 1.35 16 51 H 0.17 -1.35 4.86 -2.91 -0.01 -1.36 16 52 H 0.17 -1.90 6.29 -2.91 -0.02 -1.92 16 Total: 0.00 -25.54 432.49 -0.04 -25.58 By element: Atomic # 1 Polarization: -16.14 SS G_CDS: 0.36 Total: -15.78 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 4.23 Total: 10.05 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -8.60 Total: -37.90 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 2.17 Total: 0.69 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: 2.07 Total: 1.80 kcal Atomic # 16 Polarization: 15.84 SS G_CDS: -0.28 Total: 15.56 kcal Total: -25.54 -0.04 -25.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79575_17541816.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -272.504 kcal (2) G-P(sol) polarization free energy of solvation -25.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -298.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -298.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds