Wall clock time and date at job start Mon Mar 8 2021 12:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46772 * 2 1 4 4 C 1.34225 * 116.99899 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00137 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00142 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47536 * 300.00145 * 6 4 3 8 8 C 1.53001 * 109.46817 * 60.00450 * 6 4 3 9 9 C 1.53006 * 109.47005 * 179.97438 * 8 6 4 10 10 C 1.52992 * 109.47476 * 300.00106 * 9 8 6 11 11 F 1.39901 * 109.47030 * 299.99999 * 10 9 8 12 12 C 1.52997 * 109.47352 * 179.97438 * 10 9 8 13 13 S 1.81401 * 109.47112 * 59.99737 * 12 10 9 14 14 O 1.42105 * 110.53912 * 68.37679 * 13 12 10 15 15 O 1.42094 * 110.54452 * 291.63060 * 13 12 10 16 16 O 1.52200 * 104.44879 * 180.02562 * 13 12 10 17 17 C 1.35900 * 114.00271 * 75.00511 * 16 13 12 18 18 C 1.38707 * 120.05163 * 270.02523 * 17 16 13 19 19 C 1.38166 * 119.94172 * 179.97438 * 18 17 16 20 20 C 1.50702 * 119.97212 * 179.97438 * 19 18 17 21 21 O 1.42909 * 109.47267 * 299.99986 * 20 19 18 22 22 Si 1.86295 * 109.47284 * 180.02562 * 20 19 18 23 23 C 1.38244 * 120.05849 * 359.72378 * 19 18 17 24 24 C 1.38288 * 120.10735 * 0.54781 * 23 19 18 25 25 C 1.38126 * 120.05387 * 359.44975 * 24 23 19 26 26 C 1.53001 * 109.47090 * 59.99946 * 10 9 8 27 27 C 1.53000 * 109.47257 * 299.99921 * 26 10 9 28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47203 * 299.99909 * 1 2 3 30 30 H 1.09001 * 109.47306 * 59.99787 * 1 2 3 31 31 H 1.08998 * 109.46924 * 240.00312 * 2 1 3 32 32 H 1.08997 * 109.46948 * 119.99848 * 2 1 3 33 33 H 1.09000 * 109.47140 * 299.99698 * 8 6 4 34 34 H 1.09003 * 109.47020 * 60.00259 * 8 6 4 35 35 H 1.09004 * 109.46714 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46647 * 60.00487 * 9 8 6 37 37 H 1.09003 * 109.47293 * 300.00282 * 12 10 9 38 38 H 1.08999 * 109.47343 * 180.02562 * 12 10 9 39 39 H 1.08006 * 120.02959 * 359.97438 * 18 17 16 40 40 H 1.08993 * 109.47168 * 59.99492 * 20 19 18 41 41 H 0.96704 * 113.99547 * 300.00331 * 21 20 19 42 42 H 1.48504 * 110.00238 * 179.97438 * 22 20 19 43 43 H 1.48502 * 110.00026 * 301.32048 * 22 20 19 44 44 H 1.07993 * 119.94966 * 180.29953 * 23 19 18 45 45 H 1.08002 * 119.97455 * 179.73146 * 24 23 19 46 46 H 1.07999 * 120.02655 * 180.25493 * 25 24 23 47 47 H 1.09000 * 109.47316 * 60.00326 * 26 10 9 48 48 H 1.09000 * 109.47140 * 180.02562 * 26 10 9 49 49 H 1.09000 * 109.47404 * 179.97438 * 27 26 10 50 50 H 1.09000 * 109.47289 * 300.00423 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4692 -0.8904 8 6 3.4485 3.6851 1.2486 9 6 4.0337 5.0988 1.2485 10 6 5.5615 5.0183 1.2494 11 9 5.9918 4.3356 2.3923 12 6 6.1468 6.4319 1.2486 13 16 5.5870 7.3189 2.7286 14 8 6.1702 6.7577 3.8966 15 8 4.1913 7.5761 2.6578 16 8 6.2280 8.6944 2.6121 17 6 5.6386 9.5029 1.6925 18 6 6.0810 9.4976 0.3778 19 6 5.4797 10.3201 -0.5554 20 6 5.9602 10.3152 -1.9838 21 8 7.3372 10.6951 -2.0246 22 14 4.9535 11.5241 -2.9817 23 6 4.4344 11.1437 -0.1812 24 6 3.9953 11.1550 1.1300 25 6 4.5930 10.3346 2.0668 26 6 6.0337 4.2707 0.0008 27 6 5.4485 2.8570 0.0010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3599 3.7421 1.2481 34 1 3.7841 3.1534 2.1391 35 1 3.6970 5.6315 2.1378 36 1 3.6984 5.6306 0.3580 37 1 5.8115 6.9635 0.3580 38 1 7.2352 6.3746 1.2488 39 1 6.8947 8.8510 0.0840 40 1 5.8467 9.3151 -2.4019 41 1 7.5128 11.5764 -1.6674 42 1 5.4179 11.5292 -4.3923 43 1 3.5153 11.1590 -2.9213 44 1 3.9626 11.7824 -0.9132 45 1 3.1813 11.8025 1.4209 46 1 4.2470 10.3407 3.0898 47 1 5.6985 4.8026 -0.8896 48 1 7.1221 4.2130 0.0017 49 1 5.7845 2.3246 -0.8888 50 1 5.7837 2.3251 0.8914 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79615_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:32:41 Heat of formation + Delta-G solvation = -241.056167 kcal Electronic energy + Delta-G solvation = -38075.670112 eV Core-core repulsion = 32884.118737 eV Total energy + Delta-G solvation = -5191.551375 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.132 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -49.07490 -42.38241 -41.67396 -39.96327 -39.16734 -38.35856 -37.65513 -37.52699 -37.25676 -34.30637 -32.91610 -32.67445 -32.20182 -31.83980 -29.19147 -27.19451 -25.23252 -24.85059 -24.24085 -23.57458 -23.37084 -21.96915 -21.41656 -20.94058 -19.55141 -19.06648 -18.80806 -18.67133 -18.19108 -17.80317 -17.68718 -17.60473 -17.11910 -16.93251 -16.82015 -16.46770 -16.23026 -16.17633 -15.60265 -15.31174 -15.19208 -15.01325 -14.91166 -14.56790 -14.50845 -14.37888 -14.27798 -14.11435 -13.87627 -13.83817 -13.58945 -13.39253 -13.30560 -13.26121 -13.24388 -13.17940 -13.07022 -13.06502 -12.88596 -12.66768 -12.51283 -12.31585 -12.20974 -12.03105 -11.96066 -11.79347 -11.50813 -11.31471 -11.17967 -10.78693 -10.35121 -10.19141 -5.23552 -1.25382 -0.22118 -0.16053 0.84345 1.06109 1.19513 1.43120 1.61423 1.78213 2.14779 2.30928 2.65082 2.75335 2.97602 3.08963 3.18937 3.25097 3.27866 3.42383 3.46784 3.53558 3.61664 3.68111 3.76342 3.79875 3.90534 3.93484 3.95563 3.98274 4.01790 4.03193 4.10534 4.15214 4.17808 4.28678 4.41786 4.48715 4.50125 4.62174 4.64007 4.69577 4.72358 4.79568 4.80221 4.82884 4.87926 4.95766 4.98773 5.00246 5.01384 5.13914 5.45410 5.47559 6.32037 6.75271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.467 3.533 5 O -0.503 6.503 6 C -0.082 4.082 7 H 0.114 0.886 8 C -0.112 4.112 9 C -0.169 4.169 10 C 0.137 3.863 11 F -0.189 7.189 12 C -0.687 4.687 13 S 2.595 3.405 14 O -0.906 6.906 15 O -0.940 6.940 16 O -0.660 6.660 17 C 0.063 3.937 18 C -0.108 4.108 19 C -0.103 4.103 20 C -0.072 4.072 21 O -0.537 6.537 22 Si 0.692 3.308 23 C -0.099 4.099 24 C -0.092 4.092 25 C -0.082 4.082 26 C -0.128 4.128 27 C -0.110 4.110 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.119 0.881 41 H 0.382 0.618 42 H -0.251 1.251 43 H -0.253 1.253 44 H 0.140 0.860 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 6.311 -5.070 8.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.390 6.390 6 C -0.101 4.101 7 H 0.131 0.869 8 C -0.149 4.149 9 C -0.206 4.206 10 C 0.118 3.882 11 F -0.169 7.169 12 C -0.812 4.812 13 S 2.689 3.311 14 O -0.904 6.904 15 O -0.939 6.939 16 O -0.619 6.619 17 C 0.022 3.978 18 C -0.128 4.128 19 C -0.104 4.104 20 C -0.182 4.182 21 O -0.343 6.343 22 Si 0.593 3.407 23 C -0.117 4.117 24 C -0.110 4.110 25 C -0.102 4.102 26 C -0.166 4.166 27 C -0.147 4.147 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.171 0.829 38 H 0.173 0.827 39 H 0.162 0.838 40 H 0.136 0.864 41 H 0.230 0.770 42 H -0.176 1.176 43 H -0.178 1.178 44 H 0.157 0.843 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.103 0.897 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.557 5.649 -5.239 8.486 hybrid contribution 0.644 -1.181 -0.131 1.352 sum -2.913 4.468 -5.370 7.569 Atomic orbital electron populations 1.21823 0.92296 1.03277 1.03662 1.23089 0.95613 0.79809 1.02778 1.86497 1.24298 1.32797 1.83777 1.23598 0.80754 0.92420 0.72333 1.90696 1.60452 1.43049 1.44829 1.21172 0.96673 0.90222 1.02057 0.86855 1.21505 1.02375 0.94087 0.96931 1.22655 0.91876 0.99444 1.06652 1.20475 0.94908 0.87464 0.85393 1.92988 1.91185 1.81116 1.51622 1.31576 1.14620 1.09552 1.25436 1.05627 0.74690 0.74154 0.76616 1.93700 1.78126 1.76047 1.42562 1.93656 1.31969 1.81329 1.86923 1.85773 1.70574 1.43248 1.62260 1.18110 0.96384 0.97099 0.86244 1.21188 1.00191 1.00832 0.90605 1.20250 0.96712 0.96926 0.96523 1.25138 0.89542 1.07694 0.95842 1.86528 1.22691 1.39288 1.85800 0.94582 0.78148 0.87661 0.80280 1.21322 0.95864 0.97616 0.96887 1.21142 0.99621 0.98123 0.92068 1.21441 0.93185 0.93758 1.01797 1.22095 1.02614 0.95880 0.96059 1.21489 0.91655 0.96388 1.05191 0.90002 0.91309 0.91395 0.91116 0.91047 0.88846 0.90064 0.88268 0.88105 0.82885 0.82740 0.83806 0.86401 0.76983 1.17594 1.17814 0.84286 0.83508 0.83687 0.89193 0.89205 0.89655 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.22 10.29 37.16 0.38 0.60 16 2 C 0.06 0.04 6.19 37.16 0.23 0.27 16 3 O -0.36 -0.63 10.12 -39.24 -0.40 -1.03 16 4 C 0.47 1.08 7.25 36.00 0.26 1.34 16 5 O -0.50 -2.65 15.73 -18.75 -0.29 -2.94 16 6 C -0.08 0.04 2.63 -91.77 -0.24 -0.20 16 7 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 8 C -0.11 0.05 5.01 -26.73 -0.13 -0.08 16 9 C -0.17 0.13 4.52 -26.73 -0.12 0.01 16 10 C 0.14 -0.04 0.88 -90.62 -0.08 -0.12 16 11 F -0.19 -0.55 15.05 2.25 0.03 -0.51 16 12 C -0.69 1.19 4.74 37.16 0.18 1.37 16 13 S 2.60 4.94 4.51 -107.50 -0.49 4.45 16 14 O -0.91 -5.48 17.61 -67.03 -1.18 -6.66 16 15 O -0.94 -2.43 13.88 -67.04 -0.93 -3.36 16 16 O -0.66 -0.98 10.05 -51.75 -0.52 -1.50 16 17 C 0.06 0.01 4.80 -39.22 -0.19 -0.18 16 18 C -0.11 0.19 8.02 -39.43 -0.32 -0.13 16 19 C -0.10 0.28 5.39 -104.65 -0.56 -0.28 16 20 C -0.07 0.23 2.82 36.01 0.10 0.33 16 21 O -0.54 1.32 12.77 -35.23 -0.45 0.87 16 22 Si 0.69 -2.57 29.79 -169.99 -5.06 -7.63 16 23 C -0.10 0.34 8.67 -39.56 -0.34 0.00 16 24 C -0.09 0.26 10.04 -39.60 -0.40 -0.13 16 25 C -0.08 0.06 9.05 -39.43 -0.36 -0.30 16 26 C -0.13 0.25 5.00 -26.73 -0.13 0.12 16 27 C -0.11 0.03 4.37 -26.73 -0.12 -0.08 16 28 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 29 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 30 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 32 H 0.07 0.06 8.13 -51.93 -0.42 -0.37 16 33 H 0.09 -0.12 8.11 -51.93 -0.42 -0.54 16 34 H 0.08 0.06 7.80 -51.93 -0.41 -0.35 16 35 H 0.10 0.03 5.47 -51.93 -0.28 -0.26 16 36 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 37 H 0.15 -0.72 6.60 -51.92 -0.34 -1.07 16 38 H 0.15 -0.54 8.14 -51.92 -0.42 -0.96 16 39 H 0.14 -0.47 7.49 -52.48 -0.39 -0.87 16 40 H 0.12 -0.41 7.96 -51.93 -0.41 -0.82 16 41 H 0.38 -2.33 8.70 45.56 0.40 -1.94 16 42 H -0.25 0.02 7.11 56.52 0.40 0.42 16 43 H -0.25 0.43 7.11 56.52 0.40 0.83 16 44 H 0.14 -0.78 4.87 -52.49 -0.26 -1.04 16 45 H 0.15 -0.78 8.06 -52.49 -0.42 -1.21 16 46 H 0.15 -0.20 8.06 -52.49 -0.42 -0.62 16 47 H 0.09 -0.38 8.14 -51.93 -0.42 -0.80 16 48 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 49 H 0.08 -0.03 8.10 -51.93 -0.42 -0.45 16 50 H 0.08 0.13 7.76 -51.93 -0.40 -0.27 16 LS Contribution 413.77 15.07 6.24 6.24 Total: 0.00 -11.94 413.77 -12.10 -24.05 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: -7.21 Total: -14.49 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.84 Total: 2.52 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -3.77 Total: -14.63 kcal Atomic # 9 Polarization: -0.55 SS G_CDS: 0.03 Total: -0.51 kcal Atomic # 14 Polarization: -2.57 SS G_CDS: -5.06 Total: -7.63 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -0.49 Total: 4.45 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -11.94 -12.10 -24.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79615_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.010 kcal (2) G-P(sol) polarization free energy of solvation -11.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds