Wall clock time and date at job start Mon Mar 8 2021 12:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46772 * 2 1 4 4 C 1.34225 * 116.99899 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00137 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00142 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47536 * 300.00145 * 6 4 3 8 8 C 1.53001 * 109.46817 * 60.00450 * 6 4 3 9 9 C 1.53006 * 109.47005 * 179.97438 * 8 6 4 10 10 C 1.52992 * 109.47476 * 300.00106 * 9 8 6 11 11 F 1.39901 * 109.47030 * 299.99999 * 10 9 8 12 12 C 1.52997 * 109.47352 * 179.97438 * 10 9 8 13 13 S 1.81401 * 109.47112 * 59.99737 * 12 10 9 14 14 O 1.42105 * 110.53912 * 68.37679 * 13 12 10 15 15 O 1.42094 * 110.54452 * 291.63060 * 13 12 10 16 16 O 1.52200 * 104.44879 * 180.02562 * 13 12 10 17 17 C 1.35900 * 114.00271 * 75.00511 * 16 13 12 18 18 C 1.38707 * 120.05163 * 270.02523 * 17 16 13 19 19 C 1.38166 * 119.94172 * 179.97438 * 18 17 16 20 20 C 1.50702 * 119.97212 * 179.97438 * 19 18 17 21 21 O 1.42909 * 109.47267 * 299.99986 * 20 19 18 22 22 Si 1.86295 * 109.47284 * 180.02562 * 20 19 18 23 23 C 1.38244 * 120.05849 * 359.72378 * 19 18 17 24 24 C 1.38288 * 120.10735 * 0.54781 * 23 19 18 25 25 C 1.38126 * 120.05387 * 359.44975 * 24 23 19 26 26 C 1.53001 * 109.47090 * 59.99946 * 10 9 8 27 27 C 1.53000 * 109.47257 * 299.99921 * 26 10 9 28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47203 * 299.99909 * 1 2 3 30 30 H 1.09001 * 109.47306 * 59.99787 * 1 2 3 31 31 H 1.08998 * 109.46924 * 240.00312 * 2 1 3 32 32 H 1.08997 * 109.46948 * 119.99848 * 2 1 3 33 33 H 1.09000 * 109.47140 * 299.99698 * 8 6 4 34 34 H 1.09003 * 109.47020 * 60.00259 * 8 6 4 35 35 H 1.09004 * 109.46714 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.46647 * 60.00487 * 9 8 6 37 37 H 1.09003 * 109.47293 * 300.00282 * 12 10 9 38 38 H 1.08999 * 109.47343 * 180.02562 * 12 10 9 39 39 H 1.08006 * 120.02959 * 359.97438 * 18 17 16 40 40 H 1.08993 * 109.47168 * 59.99492 * 20 19 18 41 41 H 0.96704 * 113.99547 * 300.00331 * 21 20 19 42 42 H 1.48504 * 110.00238 * 179.97438 * 22 20 19 43 43 H 1.48502 * 110.00026 * 301.32048 * 22 20 19 44 44 H 1.07993 * 119.94966 * 180.29953 * 23 19 18 45 45 H 1.08002 * 119.97455 * 179.73146 * 24 23 19 46 46 H 1.07999 * 120.02655 * 180.25493 * 25 24 23 47 47 H 1.09000 * 109.47316 * 60.00326 * 26 10 9 48 48 H 1.09000 * 109.47140 * 180.02562 * 26 10 9 49 49 H 1.09000 * 109.47404 * 179.97438 * 27 26 10 50 50 H 1.09000 * 109.47289 * 300.00423 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4692 -0.8904 8 6 3.4485 3.6851 1.2486 9 6 4.0337 5.0988 1.2485 10 6 5.5615 5.0183 1.2494 11 9 5.9918 4.3356 2.3923 12 6 6.1468 6.4319 1.2486 13 16 5.5870 7.3189 2.7286 14 8 6.1702 6.7577 3.8966 15 8 4.1913 7.5761 2.6578 16 8 6.2280 8.6944 2.6121 17 6 5.6386 9.5029 1.6925 18 6 6.0810 9.4976 0.3778 19 6 5.4797 10.3201 -0.5554 20 6 5.9602 10.3152 -1.9838 21 8 7.3372 10.6951 -2.0246 22 14 4.9535 11.5241 -2.9817 23 6 4.4344 11.1437 -0.1812 24 6 3.9953 11.1550 1.1300 25 6 4.5930 10.3346 2.0668 26 6 6.0337 4.2707 0.0008 27 6 5.4485 2.8570 0.0010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3599 3.7421 1.2481 34 1 3.7841 3.1534 2.1391 35 1 3.6970 5.6315 2.1378 36 1 3.6984 5.6306 0.3580 37 1 5.8115 6.9635 0.3580 38 1 7.2352 6.3746 1.2488 39 1 6.8947 8.8510 0.0840 40 1 5.8467 9.3151 -2.4019 41 1 7.5128 11.5764 -1.6674 42 1 5.4179 11.5292 -4.3923 43 1 3.5153 11.1590 -2.9213 44 1 3.9626 11.7824 -0.9132 45 1 3.1813 11.8025 1.4209 46 1 4.2470 10.3407 3.0898 47 1 5.6985 4.8026 -0.8896 48 1 7.1221 4.2130 0.0017 49 1 5.7845 2.3246 -0.8888 50 1 5.7837 2.3251 0.8914 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79615_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:32:39 Heat of formation + Delta-G solvation = -242.045183 kcal Electronic energy + Delta-G solvation = -38075.712999 eV Core-core repulsion = 32884.118737 eV Total energy + Delta-G solvation = -5191.594262 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.132 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.13776 -42.30251 -41.81852 -39.78974 -39.14820 -38.51293 -37.70573 -37.44160 -37.38157 -34.27631 -32.71927 -32.61784 -32.11563 -31.64509 -29.12916 -26.94548 -25.21723 -24.74969 -24.15710 -23.55450 -23.17834 -22.00923 -21.35902 -20.90180 -19.54962 -19.01764 -18.86734 -18.70158 -18.05817 -17.85080 -17.74043 -17.44881 -17.15100 -16.88030 -16.73431 -16.33340 -16.17113 -16.09893 -15.43975 -15.32914 -15.02122 -14.93510 -14.88966 -14.55606 -14.44550 -14.30376 -14.18580 -14.08660 -13.85841 -13.75161 -13.51121 -13.46494 -13.27140 -13.23282 -13.19896 -13.18508 -12.99527 -12.94849 -12.85764 -12.63827 -12.50332 -12.22333 -12.02727 -12.00598 -11.79521 -11.72902 -11.59311 -11.38871 -11.15233 -10.52541 -10.13051 -9.99881 -4.92846 -1.27254 -0.06344 0.06479 0.86433 1.03384 1.34599 1.56662 1.69434 2.03917 2.29896 2.36446 2.68707 2.79596 3.07156 3.25169 3.33947 3.37193 3.49167 3.60100 3.64454 3.67168 3.75147 3.84475 3.93130 3.96477 3.99351 4.00649 4.02526 4.06546 4.11084 4.24995 4.26225 4.27977 4.29430 4.47875 4.50433 4.59849 4.74670 4.76253 4.77430 4.84887 4.86067 4.88548 4.90092 4.96720 5.00872 5.05411 5.09995 5.20147 5.20645 5.23401 5.39580 5.68220 6.59997 6.78591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.077 4.077 7 H 0.148 0.852 8 C -0.110 4.110 9 C -0.172 4.172 10 C 0.123 3.877 11 F -0.214 7.214 12 C -0.667 4.667 13 S 2.590 3.410 14 O -0.965 6.965 15 O -0.957 6.957 16 O -0.668 6.668 17 C 0.036 3.964 18 C -0.109 4.109 19 C -0.101 4.101 20 C -0.072 4.072 21 O -0.554 6.554 22 Si 0.769 3.231 23 C -0.093 4.093 24 C -0.090 4.090 25 C -0.104 4.104 26 C -0.122 4.122 27 C -0.110 4.110 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.134 0.866 37 H 0.191 0.809 38 H 0.176 0.824 39 H 0.160 0.840 40 H 0.125 0.875 41 H 0.397 0.603 42 H -0.304 1.304 43 H -0.275 1.275 44 H 0.163 0.837 45 H 0.171 0.829 46 H 0.139 0.861 47 H 0.126 0.874 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 7.902 -7.599 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.095 4.095 7 H 0.165 0.835 8 C -0.148 4.148 9 C -0.210 4.210 10 C 0.103 3.897 11 F -0.195 7.195 12 C -0.796 4.796 13 S 2.689 3.311 14 O -0.963 6.963 15 O -0.955 6.955 16 O -0.627 6.627 17 C -0.005 4.005 18 C -0.130 4.130 19 C -0.102 4.102 20 C -0.182 4.182 21 O -0.362 6.362 22 Si 0.675 3.325 23 C -0.111 4.111 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.160 4.160 27 C -0.148 4.148 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.152 0.848 37 H 0.209 0.791 38 H 0.194 0.806 39 H 0.177 0.823 40 H 0.142 0.858 41 H 0.247 0.753 42 H -0.232 1.232 43 H -0.201 1.201 44 H 0.180 0.820 45 H 0.188 0.812 46 H 0.157 0.843 47 H 0.144 0.856 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.106 7.275 -7.692 11.356 hybrid contribution 0.783 -1.646 0.547 1.903 sum -3.323 5.629 -7.145 9.684 Atomic orbital electron populations 1.21823 0.90556 1.04263 1.03818 1.23252 0.97007 0.79398 1.02379 1.86509 1.24125 1.33404 1.83439 1.24247 0.80631 0.93224 0.71063 1.90676 1.61173 1.44467 1.46690 1.21284 0.96375 0.88625 1.03245 0.83490 1.21476 1.02901 0.94307 0.96110 1.22747 0.91601 0.99055 1.07575 1.20864 0.95419 0.88061 0.85309 1.92947 1.91460 1.81790 1.53282 1.31432 1.15961 1.08174 1.24033 1.05529 0.74239 0.74184 0.77185 1.93626 1.78918 1.77279 1.46506 1.93619 1.32819 1.81619 1.87449 1.85748 1.70472 1.43313 1.63185 1.18455 0.97454 0.97765 0.86871 1.21366 1.00493 1.01305 0.89788 1.20359 0.96650 0.96641 0.96505 1.25227 0.89385 1.08216 0.95415 1.86498 1.22966 1.40691 1.86016 0.93650 0.75612 0.86397 0.76819 1.21619 0.95284 0.97173 0.97042 1.21437 0.99776 0.97645 0.91896 1.21649 0.93762 0.94715 1.02303 1.22149 1.03030 0.94597 0.96270 1.21468 0.91915 0.97491 1.03916 0.88629 0.91318 0.90980 0.91256 0.91812 0.87996 0.92355 0.89783 0.84765 0.79115 0.80647 0.82271 0.85809 0.75260 1.23246 1.20118 0.82000 0.81196 0.84341 0.85590 0.88495 0.89432 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.44 10.29 71.98 0.74 1.18 16 2 C 0.05 0.10 6.19 71.98 0.45 0.55 16 3 O -0.36 -1.43 10.12 -51.37 -0.52 -1.95 16 4 C 0.46 2.48 7.25 71.24 0.52 3.00 16 5 O -0.54 -6.59 15.73 21.95 0.35 -6.25 16 6 C -0.08 0.12 2.63 -11.54 -0.03 0.09 16 7 H 0.15 -1.21 8.14 -2.39 -0.02 -1.23 16 8 C -0.11 0.07 5.01 30.60 0.15 0.23 16 9 C -0.17 0.39 4.52 30.59 0.14 0.53 16 10 C 0.12 -0.15 0.88 -10.80 -0.01 -0.15 16 11 F -0.21 -1.61 15.05 44.97 0.68 -0.93 16 12 C -0.67 3.16 4.74 71.98 0.34 3.50 16 13 S 2.59 13.01 4.51 -56.49 -0.25 12.75 16 14 O -0.97 -14.55 17.61 -118.57 -2.09 -16.64 16 15 O -0.96 -6.15 13.88 -118.57 -1.65 -7.79 16 16 O -0.67 -2.69 10.05 -61.51 -0.62 -3.30 16 17 C 0.04 0.00 4.80 22.50 0.11 0.11 16 18 C -0.11 0.56 8.02 22.36 0.18 0.74 16 19 C -0.10 0.79 5.39 -19.88 -0.11 0.68 16 20 C -0.07 0.64 2.82 71.24 0.20 0.84 16 21 O -0.55 3.89 12.77 -148.98 -1.90 1.99 16 22 Si 0.77 -7.01 29.79 68.60 2.04 -4.97 16 23 C -0.09 0.86 8.67 22.28 0.19 1.05 16 24 C -0.09 0.64 10.04 22.26 0.22 0.87 16 25 C -0.10 0.13 9.05 22.36 0.20 0.33 16 26 C -0.12 0.72 5.00 30.59 0.15 0.87 16 27 C -0.11 0.08 4.37 30.60 0.13 0.21 16 28 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 30 H 0.07 -0.26 8.14 -2.39 -0.02 -0.27 16 31 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 32 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 33 H 0.10 -0.27 8.11 -2.39 -0.02 -0.29 16 34 H 0.06 0.22 7.80 -2.39 -0.02 0.20 16 35 H 0.08 0.12 5.47 -2.38 -0.01 0.10 16 36 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 37 H 0.19 -2.43 6.60 -2.39 -0.02 -2.45 16 38 H 0.18 -1.52 8.14 -2.39 -0.02 -1.54 16 39 H 0.16 -1.44 7.49 -2.91 -0.02 -1.46 16 40 H 0.12 -1.22 7.96 -2.39 -0.02 -1.24 16 41 H 0.40 -5.66 8.70 -74.05 -0.64 -6.30 16 42 H -0.30 0.02 7.11 99.48 0.71 0.73 16 43 H -0.27 1.49 7.11 99.48 0.71 2.20 16 44 H 0.16 -2.31 4.87 -2.91 -0.01 -2.33 16 45 H 0.17 -2.13 8.06 -2.91 -0.02 -2.16 16 46 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 47 H 0.13 -1.61 8.14 -2.39 -0.02 -1.63 16 48 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 49 H 0.09 -0.10 8.10 -2.39 -0.02 -0.12 16 50 H 0.06 0.28 7.76 -2.39 -0.02 0.27 16 Total: 0.00 -32.58 413.77 -0.01 -32.59 By element: Atomic # 1 Polarization: -20.49 SS G_CDS: 0.37 Total: -20.12 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 3.58 Total: 14.62 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -6.43 Total: -33.94 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.68 Total: -0.93 kcal Atomic # 14 Polarization: -7.01 SS G_CDS: 2.04 Total: -4.97 kcal Atomic # 16 Polarization: 13.01 SS G_CDS: -0.25 Total: 12.75 kcal Total: -32.58 -0.01 -32.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79615_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.455 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds