Wall clock time and date at job start Mon Mar 8 2021 12:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 116.99999 * 2 1 4 4 O 1.20821 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00128 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.84884 * 311.19766 * 5 3 2 7 7 C 1.53783 * 113.68773 * 82.45891 * 5 3 2 8 8 C 1.53786 * 87.07540 * 139.99572 * 7 5 3 9 9 H 1.09003 * 113.69154 * 89.12908 * 8 7 5 10 10 S 1.81403 * 113.61246 * 220.01770 * 8 7 5 11 11 O 1.42101 * 110.53879 * 34.68549 * 10 8 7 12 12 O 1.42094 * 110.54576 * 171.43928 * 10 8 7 13 13 O 1.52206 * 104.44968 * 283.06730 * 10 8 7 14 14 C 1.36010 * 113.99622 * 284.21542 * 13 10 8 15 15 C 1.39118 * 120.07679 * 92.85492 * 14 13 10 16 16 O 1.35996 * 120.06938 * 0.02562 * 15 14 13 17 17 C 1.42896 * 117.00070 * 179.97438 * 16 15 14 18 18 C 1.38589 * 119.86583 * 180.02562 * 15 14 13 19 19 C 1.38235 * 120.01441 * 359.97438 * 18 15 14 20 20 C 1.50697 * 119.92364 * 180.02562 * 19 18 15 21 21 O 1.42895 * 109.47416 * 64.99877 * 20 19 18 22 22 Si 1.86308 * 109.47173 * 184.99936 * 20 19 18 23 23 C 1.38252 * 120.15446 * 359.97438 * 19 18 15 24 24 C 1.38320 * 120.13286 * 359.76619 * 23 19 18 25 25 Br 1.89103 * 120.00629 * 180.27805 * 24 23 19 26 26 C 1.53776 * 87.08267 * 334.56573 * 8 7 5 27 27 H 1.08998 * 109.47599 * 300.00238 * 1 2 3 28 28 H 1.09003 * 109.47074 * 60.00648 * 1 2 3 29 29 H 1.09004 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.08994 * 113.61612 * 25.44645 * 7 5 3 31 31 H 1.09006 * 113.61429 * 254.53603 * 7 5 3 32 32 H 1.09002 * 109.47011 * 60.00269 * 17 16 15 33 33 H 1.09003 * 109.47049 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.47616 * 300.00207 * 17 16 15 35 35 H 1.07999 * 119.99557 * 180.02562 * 18 15 14 36 36 H 1.09008 * 109.47067 * 304.99664 * 20 19 18 37 37 H 0.96700 * 114.00105 * 60.00258 * 21 20 19 38 38 H 1.48495 * 109.99954 * 179.97438 * 22 20 19 39 39 H 1.48495 * 109.99882 * 301.31391 * 22 20 19 40 40 H 1.08001 * 119.93566 * 180.02562 * 23 19 18 41 41 H 1.08995 * 113.61669 * 139.98273 * 26 8 7 42 42 H 1.08995 * 113.61486 * 270.88639 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6366 0.7567 7 6 4.1935 1.1224 -1.3952 8 6 5.1827 2.2261 -0.9848 9 1 6.0823 1.8491 -0.4981 10 16 5.5430 3.4091 -2.3120 11 8 4.3912 3.6219 -3.1165 12 8 6.3004 4.5029 -1.8130 13 8 6.5089 2.6703 -3.2275 14 6 7.7767 2.5870 -2.7423 15 6 8.1671 1.4783 -1.9982 16 8 7.2818 0.4750 -1.7548 17 6 7.7523 -0.6326 -0.9842 18 6 9.4599 1.3982 -1.5054 19 6 10.3591 2.4183 -1.7539 20 6 11.7645 2.3288 -1.2176 21 8 12.4421 1.2340 -1.8374 22 14 12.6732 3.9122 -1.5896 23 6 9.9722 3.5200 -2.4942 24 6 8.6851 3.6039 -2.9935 25 35 8.1621 5.1088 -4.0122 26 6 4.1077 2.7142 0.0004 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.5273 1.4131 -2.2074 31 1 4.6643 0.1530 -1.5588 32 1 8.0747 -0.2822 -0.0037 33 1 6.9486 -1.3590 -0.8639 34 1 8.5924 -1.1013 -1.4968 35 1 9.7653 0.5382 -0.9279 36 1 11.7327 2.1729 -0.1392 37 1 12.5079 1.3060 -2.7995 38 1 14.0604 3.8369 -1.0652 39 1 12.6959 4.1525 -3.0548 40 1 10.6777 4.3148 -2.6865 41 1 4.5090 3.0299 0.9634 42 1 3.4181 3.4401 -0.4303 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79621_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:43:22 Heat of formation + Delta-G solvation = -168.741514 kcal Electronic energy + Delta-G solvation = -34085.713456 eV Core-core repulsion = 29174.864517 eV Total energy + Delta-G solvation = -4910.848939 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.005 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.75143 -41.87318 -40.56119 -39.68182 -39.44729 -38.20945 -37.58424 -37.31424 -37.10199 -33.56820 -32.25676 -30.54243 -29.90247 -28.98208 -27.75709 -27.28146 -27.10953 -24.01316 -23.74900 -23.25735 -21.81339 -20.85711 -19.83936 -19.69987 -18.99111 -18.74822 -18.64847 -18.21659 -17.82541 -17.45499 -17.31553 -16.93023 -16.72820 -16.57757 -16.27038 -16.15331 -15.72597 -15.54349 -14.82048 -14.74827 -14.51880 -14.45104 -14.37008 -13.98580 -13.84200 -13.76816 -13.56739 -13.43981 -13.20782 -13.17246 -13.10747 -13.08461 -13.00118 -12.81050 -12.67438 -12.51848 -11.98660 -11.92521 -11.80305 -11.72890 -11.63441 -11.43752 -11.22145 -10.93619 -10.12019 -9.82027 -5.11964 -1.17821 -0.45881 -0.34333 0.20155 0.90423 1.01013 1.11945 1.42410 1.63668 1.65013 1.77843 1.84799 2.49209 2.64794 2.83896 2.93089 3.03381 3.13296 3.14268 3.32038 3.46440 3.49480 3.57390 3.65796 3.82881 3.84884 3.86965 4.05686 4.15885 4.16251 4.22996 4.24300 4.26785 4.28687 4.35313 4.39123 4.48003 4.55566 4.60173 4.64333 4.76006 4.84977 4.88031 5.34621 5.68007 6.11043 6.68540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.136 0.864 7 C -0.086 4.086 8 C -0.641 4.641 9 H 0.160 0.840 10 S 2.585 3.415 11 O -0.913 6.913 12 O -0.935 6.935 13 O -0.643 6.643 14 C 0.063 3.937 15 C 0.136 3.864 16 O -0.303 6.303 17 C 0.016 3.984 18 C -0.155 4.155 19 C -0.053 4.053 20 C -0.077 4.077 21 O -0.524 6.524 22 Si 0.683 3.317 23 C -0.114 4.114 24 C -0.027 4.027 25 Br 0.006 6.994 26 C -0.089 4.089 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.380 0.620 38 H -0.248 1.248 39 H -0.252 1.252 40 H 0.154 0.846 41 H 0.104 0.896 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 -5.403 4.662 8.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.154 0.846 7 C -0.124 4.124 8 C -0.748 4.748 9 H 0.178 0.822 10 S 2.680 3.320 11 O -0.911 6.911 12 O -0.933 6.933 13 O -0.601 6.601 14 C 0.017 3.983 15 C 0.087 3.913 16 O -0.216 6.216 17 C -0.078 4.078 18 C -0.174 4.174 19 C -0.056 4.056 20 C -0.187 4.187 21 O -0.331 6.331 22 Si 0.583 3.417 23 C -0.134 4.134 24 C -0.110 4.110 25 Br 0.093 6.907 26 C -0.127 4.127 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.174 0.826 36 H 0.147 0.853 37 H 0.228 0.772 38 H -0.173 1.173 39 H -0.176 1.176 40 H 0.171 0.829 41 H 0.123 0.877 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.794 -3.881 3.826 6.640 hybrid contribution -0.106 -1.821 -0.069 1.825 sum 3.688 -5.702 3.757 7.761 Atomic orbital electron populations 1.23355 0.75744 1.04085 1.02902 1.86500 1.23883 1.33068 1.83807 1.23488 0.91536 0.81643 0.72457 1.90709 1.66835 1.36385 1.44560 1.22421 0.87739 1.00083 1.01244 0.84627 1.22576 0.95059 0.98833 0.95902 1.32180 1.08002 1.16083 1.18487 0.82185 1.06003 0.74878 0.75416 0.75687 1.93672 1.49144 1.83508 1.64763 1.93706 1.67822 1.50176 1.81627 1.85774 1.26952 1.84349 1.63016 1.16799 0.82022 0.95680 1.03753 1.18870 0.90075 0.87776 0.94622 1.86200 1.37047 1.28692 1.69682 1.23362 1.02796 0.86797 0.94844 1.21174 0.90825 1.01598 1.03853 1.20329 0.96909 0.92936 0.95379 1.25104 0.90319 1.01502 1.01748 1.86631 1.77701 1.43172 1.25582 0.94749 0.82169 0.80996 0.83788 1.20952 0.94330 0.99243 0.98863 1.21823 0.95198 0.93929 1.00034 1.96912 1.91718 1.34691 1.67356 1.22650 0.94157 0.95951 0.99957 0.91654 0.91557 0.87765 0.87529 0.87509 0.91586 0.86882 0.91441 0.82612 0.85296 0.77196 1.17291 1.17627 0.82899 0.87749 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.40 10.57 -39.27 -0.41 -0.81 16 3 C 0.47 0.89 7.49 36.01 0.27 1.16 16 4 O -0.50 -2.52 15.65 -18.75 -0.29 -2.81 16 5 C -0.09 0.11 4.26 -90.96 -0.39 -0.27 16 6 H 0.14 -0.56 8.14 -51.93 -0.42 -0.99 16 7 C -0.09 0.09 7.09 -25.92 -0.18 -0.09 16 8 C -0.64 0.44 3.22 -25.92 -0.08 0.35 16 9 H 0.16 -0.50 6.02 -51.93 -0.31 -0.82 16 10 S 2.59 8.77 4.98 -107.50 -0.54 8.23 16 11 O -0.91 -6.04 17.42 -67.04 -1.17 -7.21 16 12 O -0.93 -4.16 14.56 -67.04 -0.98 -5.14 16 13 O -0.64 -2.07 9.22 -54.27 -0.50 -2.57 16 14 C 0.06 0.11 4.83 -39.11 -0.19 -0.07 16 15 C 0.14 -0.12 5.93 -39.13 -0.23 -0.35 16 16 O -0.30 0.72 7.43 -34.24 -0.25 0.47 16 17 C 0.02 -0.09 9.81 101.05 0.99 0.90 16 18 C -0.16 0.39 8.67 -39.45 -0.34 0.05 16 19 C -0.05 0.12 5.35 -104.62 -0.56 -0.44 16 20 C -0.08 0.24 2.80 36.00 0.10 0.34 16 21 O -0.52 1.00 12.83 -35.23 -0.45 0.54 16 22 Si 0.68 -1.92 29.88 -169.99 -5.08 -7.00 16 23 C -0.11 0.09 8.40 -39.55 -0.33 -0.24 16 24 C -0.03 -0.05 5.53 -39.40 -0.22 -0.27 16 25 Br 0.01 0.02 31.31 -68.01 -2.13 -2.11 16 26 C -0.09 0.05 6.99 -25.92 -0.18 -0.13 16 27 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 28 H 0.07 -0.02 8.13 -51.93 -0.42 -0.44 16 29 H 0.10 -0.32 8.14 -51.93 -0.42 -0.75 16 30 H 0.11 0.03 7.50 -51.93 -0.39 -0.36 16 31 H 0.11 -0.35 7.83 -51.93 -0.41 -0.76 16 32 H 0.07 -0.47 7.66 -51.93 -0.40 -0.86 16 33 H 0.11 -0.82 8.14 -51.93 -0.42 -1.24 16 34 H 0.07 -0.40 7.66 -51.93 -0.40 -0.80 16 35 H 0.16 -0.74 6.30 -52.49 -0.33 -1.07 16 36 H 0.13 -0.58 7.96 -51.92 -0.41 -1.00 16 37 H 0.38 -1.69 8.70 45.56 0.40 -1.29 16 38 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 39 H -0.25 0.25 7.00 56.52 0.40 0.64 16 40 H 0.15 -0.36 4.83 -52.49 -0.25 -0.61 16 41 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 42 H 0.11 0.11 7.40 -51.93 -0.38 -0.27 16 LS Contribution 379.56 15.07 5.72 5.72 Total: 0.00 -11.19 379.56 -10.99 -22.18 By element: Atomic # 1 Polarization: -6.84 SS G_CDS: -4.63 Total: -11.46 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -0.28 Total: 1.97 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -4.06 Total: -17.54 kcal Atomic # 14 Polarization: -1.92 SS G_CDS: -5.08 Total: -7.00 kcal Atomic # 16 Polarization: 8.77 SS G_CDS: -0.54 Total: 8.23 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.13 Total: -2.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -11.19 -10.99 -22.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79621_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.560 kcal (2) G-P(sol) polarization free energy of solvation -11.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds