Wall clock time and date at job start Mon Mar 8 2021 14:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 117.00120 * 2 1 4 4 C 1.38543 * 120.06665 * 0.27599 * 3 2 1 5 5 C 1.38282 * 120.01560 * 180.25466 * 4 3 2 6 6 C 1.50696 * 119.92601 * 179.72383 * 5 4 3 7 7 O 1.42904 * 109.47043 * 300.01944 * 6 5 4 8 8 Si 1.86306 * 109.47167 * 180.02562 * 6 5 4 9 9 H 1.48499 * 109.46943 * 300.00070 * 8 6 5 10 10 H 1.48497 * 109.46936 * 60.00141 * 8 6 5 11 11 H 1.48501 * 109.47004 * 179.97438 * 8 6 5 12 12 C 1.38212 * 120.15051 * 359.74607 * 5 4 3 13 13 C 1.38355 * 120.13706 * 359.97438 * 12 5 4 14 14 Br 1.89102 * 120.01040 * 180.02562 * 13 12 5 15 15 C 1.38611 * 119.98314 * 0.02562 * 13 12 5 16 16 O 1.36011 * 120.07252 * 179.97438 * 15 13 12 17 17 S 1.52200 * 113.99909 * 90.00240 * 16 15 13 18 18 O 1.42096 * 104.27696 * 318.92761 * 17 16 15 19 19 O 1.42097 * 104.27816 * 191.06607 * 17 16 15 20 20 C 1.81399 * 104.44943 * 74.99710 * 17 16 15 21 21 C 1.53002 * 109.47162 * 180.02562 * 20 17 16 22 22 C 1.53006 * 109.46974 * 179.97438 * 21 20 17 23 23 Si 1.86299 * 109.46797 * 179.97438 * 22 21 20 24 24 C 1.86301 * 109.47106 * 60.00209 * 23 22 21 25 25 C 1.86300 * 109.46875 * 180.02562 * 23 22 21 26 26 C 1.86300 * 109.47459 * 299.99993 * 23 22 21 27 27 H 1.09000 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47121 * 300.00432 * 1 2 3 29 29 H 1.08999 * 109.47109 * 60.00005 * 1 2 3 30 30 H 1.08006 * 119.99409 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.47191 * 60.02196 * 6 5 4 32 32 H 0.96704 * 113.99920 * 180.02562 * 7 6 5 33 33 H 1.08003 * 119.93127 * 179.97438 * 12 5 4 34 34 H 1.09004 * 109.47089 * 299.99831 * 20 17 16 35 35 H 1.09004 * 109.47568 * 59.99841 * 20 17 16 36 36 H 1.09000 * 109.46497 * 299.99702 * 21 20 17 37 37 H 1.08996 * 109.46876 * 60.00092 * 21 20 17 38 38 H 1.08993 * 109.46955 * 300.00073 * 22 21 20 39 39 H 1.09000 * 109.47050 * 59.99902 * 22 21 20 40 40 H 1.08996 * 109.46889 * 59.99853 * 24 23 22 41 41 H 1.09001 * 109.46900 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.47148 * 299.99722 * 24 23 22 43 43 H 1.09000 * 109.47204 * 59.99997 * 25 23 22 44 44 H 1.09001 * 109.47076 * 180.02562 * 25 23 22 45 45 H 1.09000 * 109.47148 * 299.99444 * 25 23 22 46 46 H 1.09002 * 109.46724 * 59.99677 * 26 23 22 47 47 H 1.08988 * 109.47614 * 179.97438 * 26 23 22 48 48 H 1.09000 * 109.47108 * 300.00303 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3746 0.0058 5 6 1.9221 3.6061 0.0004 6 6 1.1009 4.8696 0.0005 7 8 0.2718 4.8988 -1.1631 8 14 2.2351 6.3475 -0.0081 9 1 3.0968 6.3172 1.2009 10 1 3.0868 6.3108 -1.2241 11 1 1.4258 7.5926 -0.0088 12 6 3.3022 3.6808 -0.0053 13 6 4.0605 2.5236 -0.0053 14 35 5.9485 2.6300 -0.0125 15 6 3.4360 1.2861 0.0000 16 8 4.1797 0.1474 -0.0005 17 16 4.5238 -0.3678 1.3897 18 8 4.8436 0.8033 2.1282 19 8 5.4972 -1.3769 1.1585 20 6 2.9791 -1.1006 1.9961 21 6 3.1979 -1.6601 3.4032 22 6 1.8948 -2.2776 3.9148 23 14 2.1615 -2.9596 5.6279 24 6 2.6870 -1.5840 6.7691 25 6 0.5751 -3.7121 6.2505 26 6 3.4894 -4.2654 5.5767 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2146 2.3192 0.0099 31 1 0.4756 4.8966 0.8929 32 1 -0.2856 5.6863 -1.2293 33 1 3.7897 4.6445 -0.0099 34 1 2.2019 -0.3369 2.0260 35 1 2.6720 -1.9055 1.3283 36 1 3.9752 -2.4237 3.3736 37 1 3.5046 -0.8549 4.0707 38 1 1.1179 -1.5137 3.9443 39 1 1.5876 -3.0827 3.2473 40 1 1.9101 -0.8201 6.7990 41 1 2.8426 -1.9830 7.7715 42 1 3.6153 -1.1441 6.4046 43 1 0.2681 -4.5170 5.5827 44 1 0.7310 -4.1108 7.2530 45 1 -0.2021 -2.9484 6.2805 46 1 4.4176 -3.8254 5.2122 47 1 3.6457 -4.6641 6.5790 48 1 3.1820 -5.0702 4.9090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79621_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:13:08 Heat of formation + Delta-G solvation = -179.464241 kcal Electronic energy + Delta-G solvation = -32241.722725 eV Core-core repulsion = 27788.481137 eV Total energy + Delta-G solvation = -4453.241587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 440.037 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.67275 -40.44978 -39.41634 -38.11752 -37.54919 -37.00538 -35.89842 -33.54741 -32.25831 -30.48147 -29.74423 -28.97025 -28.51068 -28.43972 -28.28376 -27.12906 -23.89722 -23.57219 -22.88866 -21.56747 -19.71480 -19.07759 -19.02690 -18.64378 -18.45707 -17.54161 -17.15430 -16.94351 -16.54071 -16.29430 -15.78482 -15.60631 -15.39528 -14.97536 -14.80347 -14.56377 -14.34459 -14.20249 -14.17367 -14.10209 -14.03148 -13.66410 -13.59452 -13.49895 -13.29131 -13.21453 -13.19646 -13.12707 -13.09829 -13.05797 -12.98845 -12.92377 -12.71416 -12.56872 -12.20340 -11.98126 -11.95597 -11.78152 -11.65889 -11.40140 -10.86842 -10.83046 -10.67337 -10.55968 -10.01551 -9.73647 -1.06878 -0.36811 -0.26828 0.25513 0.88658 1.04084 1.27041 1.35131 1.69080 1.71421 1.76541 1.81530 1.82808 1.90325 2.55604 2.68351 2.90475 2.97498 3.29389 3.37649 3.45567 3.61964 3.67264 3.72436 3.75998 3.89276 3.93300 4.05240 4.07437 4.22448 4.30054 4.35832 4.44646 4.58078 4.66449 4.67413 4.68332 4.72878 4.73643 4.74722 4.75645 4.79320 4.84514 4.91020 4.95034 5.24495 5.43005 5.51865 5.54839 5.74981 6.28915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.305 6.305 3 C 0.132 3.868 4 C -0.151 4.151 5 C -0.010 4.010 6 C -0.085 4.085 7 O -0.542 6.542 8 Si 0.930 3.070 9 H -0.240 1.240 10 H -0.239 1.239 11 H -0.248 1.248 12 C -0.119 4.119 13 C -0.025 4.025 14 Br 0.005 6.995 15 C 0.064 3.936 16 O -0.646 6.646 17 S 2.572 3.428 18 O -0.941 6.941 19 O -0.921 6.921 20 C -0.635 4.635 21 C -0.102 4.102 22 C -0.403 4.403 23 Si 1.000 3.000 24 C -0.453 4.453 25 C -0.448 4.448 26 C -0.454 4.454 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.157 0.843 31 H 0.089 0.911 32 H 0.387 0.613 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.813 2.806 1.642 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.218 6.218 3 C 0.083 3.917 4 C -0.170 4.170 5 C -0.012 4.012 6 C -0.195 4.195 7 O -0.348 6.348 8 Si 0.751 3.249 9 H -0.163 1.163 10 H -0.162 1.162 11 H -0.171 1.171 12 C -0.139 4.139 13 C -0.108 4.108 14 Br 0.091 6.909 15 C 0.019 3.981 16 O -0.604 6.604 17 S 2.668 3.332 18 O -0.940 6.940 19 O -0.919 6.919 20 C -0.763 4.763 21 C -0.141 4.141 22 C -0.489 4.489 23 Si 1.197 2.803 24 C -0.560 4.560 25 C -0.556 4.556 26 C -0.561 4.561 27 H 0.130 0.870 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.107 0.893 32 H 0.235 0.765 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.391 2.883 1.282 7.128 hybrid contribution -1.816 -0.223 0.079 1.831 sum -8.207 2.660 1.361 8.734 Atomic orbital electron populations 1.23342 0.76427 1.05406 1.02476 1.86206 1.23048 1.24791 1.87792 1.18866 0.89539 0.86439 0.96825 1.21124 1.01323 0.89890 1.04631 1.19226 0.92174 0.94322 0.95495 1.24738 0.99911 1.03036 0.91842 1.86482 1.58460 1.47959 1.41942 0.85923 0.79807 0.76207 0.82952 1.16314 1.16193 1.17115 1.20845 0.92888 0.97487 1.02673 1.21703 0.93406 0.93137 1.02527 1.96890 0.98561 1.98659 1.96752 1.16754 0.85827 0.82144 1.13407 1.85772 1.72080 1.44736 1.57819 1.06308 0.77572 0.75726 0.73601 1.93689 1.82729 1.45527 1.72012 1.93654 1.55677 1.60304 1.82256 1.30872 1.22697 1.14163 1.08573 1.20995 1.00027 1.01278 0.91767 1.26144 0.98946 1.05898 1.17864 0.79357 0.67380 0.67282 0.66283 1.26169 1.05875 1.13298 1.10675 1.26098 1.16109 1.07045 1.06338 1.26176 1.12812 1.12520 1.04608 0.86984 0.91653 0.91353 0.82521 0.89271 0.76498 0.83513 0.84775 0.84065 0.90048 0.90047 0.90212 0.90015 0.91217 0.91125 0.91066 0.91250 0.91157 0.91311 0.91069 0.91127 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 101.05 0.99 0.92 16 2 O -0.31 0.21 7.54 -34.23 -0.26 -0.05 16 3 C 0.13 0.11 5.83 -39.13 -0.23 -0.12 16 4 C -0.15 0.13 8.60 -39.45 -0.34 -0.21 16 5 C -0.01 0.00 5.42 -104.62 -0.57 -0.56 16 6 C -0.09 0.24 2.81 36.00 0.10 0.34 16 7 O -0.54 1.44 12.74 -35.23 -0.45 0.99 16 8 Si 0.93 -1.97 25.06 -169.99 -4.26 -6.23 16 9 H -0.24 0.34 7.11 56.52 0.40 0.74 16 10 H -0.24 0.14 7.11 56.52 0.40 0.54 16 11 H -0.25 0.55 7.11 56.52 0.40 0.95 16 12 C -0.12 -0.16 8.40 -39.55 -0.33 -0.49 16 13 C -0.03 -0.09 5.58 -39.40 -0.22 -0.31 16 14 Br 0.00 0.02 31.62 -68.01 -2.15 -2.13 16 15 C 0.06 0.21 4.80 -39.10 -0.19 0.03 16 16 O -0.65 -2.87 9.19 -54.27 -0.50 -3.37 16 17 S 2.57 10.57 5.10 -107.50 -0.55 10.03 16 18 O -0.94 -4.90 14.93 -67.04 -1.00 -5.90 16 19 O -0.92 -6.63 18.09 -67.04 -1.21 -7.85 16 20 C -0.64 -0.06 4.53 37.16 0.17 0.11 16 21 C -0.10 0.06 4.59 -26.73 -0.12 -0.06 16 22 C -0.40 0.93 4.45 37.16 0.17 1.10 16 23 Si 1.00 -2.81 12.19 -169.99 -2.07 -4.88 16 24 C -0.45 0.68 8.65 101.05 0.87 1.55 16 25 C -0.45 0.87 8.65 101.05 0.87 1.74 16 26 C -0.45 0.55 8.65 101.05 0.87 1.43 16 27 H 0.11 -0.64 8.14 -51.93 -0.42 -1.07 16 28 H 0.06 -0.38 7.65 -51.93 -0.40 -0.78 16 29 H 0.07 -0.33 7.67 -51.93 -0.40 -0.73 16 30 H 0.16 -0.56 6.30 -52.48 -0.33 -0.89 16 31 H 0.09 -0.47 7.96 -51.93 -0.41 -0.88 16 32 H 0.39 -2.67 8.74 45.56 0.40 -2.28 16 33 H 0.15 -0.01 4.87 -52.48 -0.26 -0.27 16 34 H 0.13 -0.20 6.03 -51.92 -0.31 -0.51 16 35 H 0.14 -0.18 8.10 -51.92 -0.42 -0.60 16 36 H 0.08 -0.08 7.79 -51.93 -0.40 -0.49 16 37 H 0.08 -0.12 7.79 -51.93 -0.40 -0.52 16 38 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 39 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 40 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 41 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 42 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 43 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 44 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 45 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 46 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 47 H 0.07 -0.08 7.96 -51.94 -0.41 -0.49 16 48 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 LS Contribution 416.88 15.07 6.28 6.28 Total: 0.00 -9.55 416.88 -10.81 -20.35 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: -6.69 Total: -12.70 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 2.05 Total: 5.46 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -3.42 Total: -16.18 kcal Atomic # 14 Polarization: -4.78 SS G_CDS: -6.33 Total: -11.11 kcal Atomic # 16 Polarization: 10.57 SS G_CDS: -0.55 Total: 10.03 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.15 Total: -2.13 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -9.55 -10.81 -20.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79621_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.113 kcal (2) G-P(sol) polarization free energy of solvation -9.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds