Wall clock time and date at job start Mon Mar 8 2021 14:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 117.00120 * 2 1 4 4 C 1.38543 * 120.06665 * 0.27599 * 3 2 1 5 5 C 1.38282 * 120.01560 * 180.25466 * 4 3 2 6 6 C 1.50696 * 119.92601 * 179.72383 * 5 4 3 7 7 O 1.42904 * 109.47043 * 300.01944 * 6 5 4 8 8 Si 1.86306 * 109.47167 * 180.02562 * 6 5 4 9 9 H 1.48499 * 109.46943 * 300.00070 * 8 6 5 10 10 H 1.48497 * 109.46936 * 60.00141 * 8 6 5 11 11 H 1.48501 * 109.47004 * 179.97438 * 8 6 5 12 12 C 1.38212 * 120.15051 * 359.74607 * 5 4 3 13 13 C 1.38355 * 120.13706 * 359.97438 * 12 5 4 14 14 Br 1.89102 * 120.01040 * 180.02562 * 13 12 5 15 15 C 1.38611 * 119.98314 * 0.02562 * 13 12 5 16 16 O 1.36011 * 120.07252 * 179.97438 * 15 13 12 17 17 S 1.52200 * 113.99909 * 90.00240 * 16 15 13 18 18 O 1.42096 * 104.27696 * 318.92761 * 17 16 15 19 19 O 1.42097 * 104.27816 * 191.06607 * 17 16 15 20 20 C 1.81399 * 104.44943 * 74.99710 * 17 16 15 21 21 C 1.53002 * 109.47162 * 180.02562 * 20 17 16 22 22 C 1.53006 * 109.46974 * 179.97438 * 21 20 17 23 23 Si 1.86299 * 109.46797 * 179.97438 * 22 21 20 24 24 C 1.86301 * 109.47106 * 60.00209 * 23 22 21 25 25 C 1.86300 * 109.46875 * 180.02562 * 23 22 21 26 26 C 1.86300 * 109.47459 * 299.99993 * 23 22 21 27 27 H 1.09000 * 109.47201 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47121 * 300.00432 * 1 2 3 29 29 H 1.08999 * 109.47109 * 60.00005 * 1 2 3 30 30 H 1.08006 * 119.99409 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.47191 * 60.02196 * 6 5 4 32 32 H 0.96704 * 113.99920 * 180.02562 * 7 6 5 33 33 H 1.08003 * 119.93127 * 179.97438 * 12 5 4 34 34 H 1.09004 * 109.47089 * 299.99831 * 20 17 16 35 35 H 1.09004 * 109.47568 * 59.99841 * 20 17 16 36 36 H 1.09000 * 109.46497 * 299.99702 * 21 20 17 37 37 H 1.08996 * 109.46876 * 60.00092 * 21 20 17 38 38 H 1.08993 * 109.46955 * 300.00073 * 22 21 20 39 39 H 1.09000 * 109.47050 * 59.99902 * 22 21 20 40 40 H 1.08996 * 109.46889 * 59.99853 * 24 23 22 41 41 H 1.09001 * 109.46900 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.47148 * 299.99722 * 24 23 22 43 43 H 1.09000 * 109.47204 * 59.99997 * 25 23 22 44 44 H 1.09001 * 109.47076 * 180.02562 * 25 23 22 45 45 H 1.09000 * 109.47148 * 299.99444 * 25 23 22 46 46 H 1.09002 * 109.46724 * 59.99677 * 26 23 22 47 47 H 1.08988 * 109.47614 * 179.97438 * 26 23 22 48 48 H 1.09000 * 109.47108 * 300.00303 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3746 0.0058 5 6 1.9221 3.6061 0.0004 6 6 1.1009 4.8696 0.0005 7 8 0.2718 4.8988 -1.1631 8 14 2.2351 6.3475 -0.0081 9 1 3.0968 6.3172 1.2009 10 1 3.0868 6.3108 -1.2241 11 1 1.4258 7.5926 -0.0088 12 6 3.3022 3.6808 -0.0053 13 6 4.0605 2.5236 -0.0053 14 35 5.9485 2.6300 -0.0125 15 6 3.4360 1.2861 0.0000 16 8 4.1797 0.1474 -0.0005 17 16 4.5238 -0.3678 1.3897 18 8 4.8436 0.8033 2.1282 19 8 5.4972 -1.3769 1.1585 20 6 2.9791 -1.1006 1.9961 21 6 3.1979 -1.6601 3.4032 22 6 1.8948 -2.2776 3.9148 23 14 2.1615 -2.9596 5.6279 24 6 2.6870 -1.5840 6.7691 25 6 0.5751 -3.7121 6.2505 26 6 3.4894 -4.2654 5.5767 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2146 2.3192 0.0099 31 1 0.4756 4.8966 0.8929 32 1 -0.2856 5.6863 -1.2293 33 1 3.7897 4.6445 -0.0099 34 1 2.2019 -0.3369 2.0260 35 1 2.6720 -1.9055 1.3283 36 1 3.9752 -2.4237 3.3736 37 1 3.5046 -0.8549 4.0707 38 1 1.1179 -1.5137 3.9443 39 1 1.5876 -3.0827 3.2473 40 1 1.9101 -0.8201 6.7990 41 1 2.8426 -1.9830 7.7715 42 1 3.6153 -1.1441 6.4046 43 1 0.2681 -4.5170 5.5827 44 1 0.7310 -4.1108 7.2530 45 1 -0.2021 -2.9484 6.2805 46 1 4.4176 -3.8254 5.2122 47 1 3.6457 -4.6641 6.5790 48 1 3.1820 -5.0702 4.9090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79621_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:13:07 Heat of formation + Delta-G solvation = -177.653265 kcal Electronic energy + Delta-G solvation = -32241.644195 eV Core-core repulsion = 27788.481137 eV Total energy + Delta-G solvation = -4453.163057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 440.037 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.73012 -40.47030 -39.29560 -38.43602 -37.36654 -37.31956 -35.83377 -33.61898 -32.21529 -30.56460 -29.60347 -28.67631 -28.33514 -28.29968 -28.17169 -27.03901 -23.84562 -23.59633 -22.79534 -21.62683 -19.86890 -19.19601 -18.91260 -18.71515 -18.27509 -17.61418 -17.13813 -16.84253 -16.47819 -16.11555 -15.82983 -15.62281 -15.33607 -14.89074 -14.67355 -14.52208 -14.23488 -14.16714 -14.06332 -14.00241 -13.95222 -13.72011 -13.56271 -13.53558 -13.39019 -13.29136 -13.13702 -13.04666 -13.02468 -12.97140 -12.96594 -12.76125 -12.58967 -12.42281 -12.08916 -11.88206 -11.82654 -11.79589 -11.66605 -11.63976 -10.69801 -10.67391 -10.49190 -10.39288 -10.05685 -9.71424 -1.21437 -0.43929 -0.29299 0.10310 0.87251 1.09262 1.43487 1.49634 1.81707 1.92129 1.93253 1.95491 2.01560 2.04211 2.46725 2.74886 2.78349 3.08242 3.32819 3.42623 3.54415 3.66976 3.70876 3.76011 3.91687 4.18312 4.19458 4.31803 4.40593 4.41143 4.43271 4.55425 4.63825 4.65989 4.77727 4.81040 4.82184 4.84863 4.87306 4.89382 4.89555 4.89999 4.91773 5.03687 5.10616 5.46965 5.61272 5.67347 5.68746 5.90986 6.80696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.314 6.314 3 C 0.139 3.861 4 C -0.139 4.139 5 C -0.010 4.010 6 C -0.070 4.070 7 O -0.554 6.554 8 Si 0.941 3.059 9 H -0.256 1.256 10 H -0.271 1.271 11 H -0.240 1.240 12 C -0.130 4.130 13 C -0.046 4.046 14 Br -0.024 7.024 15 C 0.033 3.967 16 O -0.658 6.658 17 S 2.556 3.444 18 O -0.963 6.963 19 O -0.969 6.969 20 C -0.609 4.609 21 C -0.119 4.119 22 C -0.406 4.406 23 Si 1.068 2.932 24 C -0.473 4.473 25 C -0.459 4.459 26 C -0.478 4.478 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.192 0.808 31 H 0.127 0.873 32 H 0.406 0.594 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.954 2.923 1.978 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.227 6.227 3 C 0.089 3.911 4 C -0.158 4.158 5 C -0.012 4.012 6 C -0.181 4.181 7 O -0.364 6.364 8 Si 0.766 3.234 9 H -0.180 1.180 10 H -0.195 1.195 11 H -0.163 1.163 12 C -0.150 4.150 13 C -0.129 4.129 14 Br 0.063 6.937 15 C -0.012 4.012 16 O -0.616 6.616 17 S 2.657 3.343 18 O -0.962 6.962 19 O -0.967 6.967 20 C -0.740 4.740 21 C -0.158 4.158 22 C -0.492 4.492 23 Si 1.260 2.740 24 C -0.578 4.578 25 C -0.566 4.566 26 C -0.583 4.583 27 H 0.146 0.854 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.209 0.791 31 H 0.145 0.855 32 H 0.258 0.742 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.500 3.034 1.615 11.048 hybrid contribution -0.637 -0.238 -0.029 0.681 sum -11.138 2.796 1.586 11.592 Atomic orbital electron populations 1.23749 0.74278 1.07107 1.03988 1.86212 1.25192 1.24025 1.87312 1.18895 0.88587 0.87672 0.95920 1.21502 1.02788 0.88731 1.02756 1.19564 0.91575 0.95935 0.94168 1.24542 0.99833 1.00288 0.93444 1.86437 1.58666 1.49407 1.41896 0.85786 0.79431 0.77553 0.80672 1.18027 1.19542 1.16334 1.21022 0.93984 0.96966 1.03028 1.21816 0.92212 0.94301 1.04536 1.96827 1.01227 1.98693 1.96986 1.17098 0.87049 0.81571 1.15447 1.85727 1.72789 1.45355 1.57737 1.06612 0.79000 0.75179 0.73463 1.93647 1.83996 1.46274 1.72271 1.93583 1.58859 1.61197 1.83062 1.30711 1.19380 1.14890 1.09058 1.21248 1.01367 1.01811 0.91405 1.26216 0.98262 1.06708 1.17993 0.78324 0.65436 0.65040 0.65209 1.26414 1.05904 1.14409 1.11111 1.26221 1.16811 1.07393 1.06189 1.26485 1.13763 1.13711 1.04342 0.85363 0.89353 0.90589 0.79058 0.85522 0.74201 0.83294 0.82559 0.82285 0.90165 0.89488 0.88407 0.88857 0.90707 0.91557 0.91644 0.91034 0.91662 0.90748 0.91757 0.91533 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.31 1.11 7.54 -79.67 -0.60 0.51 16 3 C 0.14 0.06 5.83 22.56 0.13 0.19 16 4 C -0.14 0.59 8.60 22.35 0.19 0.78 16 5 C -0.01 0.02 5.42 -19.86 -0.11 -0.09 16 6 C -0.07 0.55 2.81 71.23 0.20 0.75 16 7 O -0.55 4.51 12.74 -148.98 -1.90 2.61 16 8 Si 0.94 -4.11 25.06 68.60 1.72 -2.39 16 9 H -0.26 0.47 7.11 99.48 0.71 1.18 16 10 H -0.27 -0.18 7.11 99.48 0.71 0.53 16 11 H -0.24 1.33 7.11 99.48 0.71 2.04 16 12 C -0.13 -0.45 8.40 22.29 0.19 -0.27 16 13 C -0.05 -0.40 5.58 22.39 0.12 -0.28 16 14 Br -0.02 -0.28 31.62 -20.37 -0.64 -0.92 16 15 C 0.03 0.25 4.80 22.58 0.11 0.36 16 16 O -0.66 -7.12 9.19 -60.69 -0.56 -7.68 16 17 S 2.56 25.67 5.10 -56.49 -0.29 25.39 16 18 O -0.96 -12.32 14.93 -118.57 -1.77 -14.09 16 19 O -0.97 -16.90 18.09 -118.57 -2.15 -19.05 16 20 C -0.61 0.38 4.53 71.98 0.33 0.71 16 21 C -0.12 0.23 4.59 30.60 0.14 0.37 16 22 C -0.41 2.80 4.45 71.98 0.32 3.12 16 23 Si 1.07 -7.06 12.19 68.60 0.84 -6.22 16 24 C -0.47 1.55 8.65 113.37 0.98 2.53 16 25 C -0.46 2.43 8.65 113.37 0.98 3.41 16 26 C -0.48 0.99 8.65 113.37 0.98 1.97 16 27 H 0.13 -1.95 8.14 -2.39 -0.02 -1.97 16 28 H 0.09 -1.45 7.65 -2.39 -0.02 -1.47 16 29 H 0.08 -1.00 7.67 -2.39 -0.02 -1.02 16 30 H 0.19 -2.24 6.30 -2.91 -0.02 -2.26 16 31 H 0.13 -1.86 7.96 -2.39 -0.02 -1.88 16 32 H 0.41 -6.84 8.74 -74.05 -0.65 -7.48 16 33 H 0.15 0.26 4.87 -2.91 -0.01 0.24 16 34 H 0.16 -0.79 6.03 -2.39 -0.01 -0.81 16 35 H 0.16 -0.64 8.10 -2.39 -0.02 -0.66 16 36 H 0.08 -0.14 7.79 -2.39 -0.02 -0.15 16 37 H 0.09 -0.27 7.79 -2.39 -0.02 -0.29 16 38 H 0.10 -0.97 7.96 -2.39 -0.02 -0.99 16 39 H 0.09 -0.80 7.96 -2.39 -0.02 -0.82 16 40 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 41 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 42 H 0.06 -0.14 7.79 -2.39 -0.02 -0.15 16 43 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 44 H 0.06 -0.26 7.96 -2.39 -0.02 -0.28 16 45 H 0.07 -0.46 7.96 -2.39 -0.02 -0.47 16 46 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 47 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 48 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 Total: 0.00 -26.62 416.88 1.42 -25.20 By element: Atomic # 1 Polarization: -19.10 SS G_CDS: 1.09 Total: -18.02 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 5.68 Total: 14.66 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -6.97 Total: -37.69 kcal Atomic # 14 Polarization: -11.17 SS G_CDS: 2.56 Total: -8.61 kcal Atomic # 16 Polarization: 25.67 SS G_CDS: -0.29 Total: 25.39 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -0.64 Total: -0.92 kcal Total: -26.62 1.42 -25.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79621_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.456 kcal (2) G-P(sol) polarization free energy of solvation -26.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds