Wall clock time and date at job start Mon Mar 8 2021 12:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.36008 * 117.00211 * 2 1 4 4 C 1.39116 * 120.06980 * 180.02562 * 3 2 1 5 5 O 1.36011 * 120.07243 * 359.94983 * 4 3 2 6 6 S 1.52196 * 113.99936 * 267.00250 * 5 4 3 7 7 O 1.42104 * 104.27950 * 191.94819 * 6 5 4 8 8 O 1.42101 * 104.27982 * 319.80273 * 6 5 4 9 9 C 1.81401 * 104.45145 * 75.87582 * 6 5 4 10 10 H 1.08994 * 112.84699 * 305.75425 * 9 6 5 11 11 C 1.53785 * 113.61074 * 76.94400 * 9 6 5 12 12 C 1.54049 * 86.98222 * 89.16613 * 11 9 6 13 13 H 1.09004 * 113.61211 * 270.87548 * 12 11 9 14 14 C 1.50702 * 113.69479 * 139.99272 * 12 11 9 15 15 C 1.38234 * 119.99608 * 322.18783 * 14 12 11 16 16 C 1.38237 * 120.00034 * 179.81485 * 15 14 12 17 17 C 1.38239 * 119.99482 * 0.39427 * 16 15 14 18 18 C 1.38227 * 120.00415 * 359.86118 * 17 16 15 19 19 C 1.38233 * 120.00123 * 359.95096 * 18 17 16 20 20 C 1.53772 * 113.61692 * 174.55160 * 9 6 5 21 21 C 1.38647 * 119.84703 * 179.97438 * 4 3 2 22 22 Br 1.89097 * 120.00675 * 180.02562 * 21 4 3 23 23 C 1.38313 * 119.98149 * 359.97438 * 21 4 3 24 24 C 1.38254 * 120.14070 * 359.97438 * 23 21 4 25 25 C 1.50698 * 119.92521 * 180.02562 * 24 23 21 26 26 O 1.42898 * 109.46682 * 244.99801 * 25 24 23 27 27 Si 1.86291 * 109.47233 * 5.00120 * 25 24 23 28 28 C 1.38244 * 120.14932 * 359.74720 * 24 23 21 29 29 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47725 * 59.99879 * 1 2 3 31 31 H 1.09005 * 109.47318 * 300.00179 * 1 2 3 32 32 H 1.09003 * 113.61085 * 203.66742 * 11 9 6 33 33 H 1.09001 * 113.61657 * 334.57103 * 11 9 6 34 34 H 1.08005 * 120.00266 * 359.97438 * 15 14 12 35 35 H 1.07994 * 120.00352 * 180.23194 * 16 15 14 36 36 H 1.08007 * 119.99679 * 179.83066 * 17 16 15 37 37 H 1.08001 * 120.00376 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.00754 * 179.97438 * 19 18 17 39 39 H 1.09002 * 113.61463 * 25.43344 * 20 9 6 40 40 H 1.08996 * 113.61725 * 156.24863 * 20 9 6 41 41 H 1.07999 * 119.93129 * 180.02562 * 23 21 4 42 42 H 1.09001 * 109.47080 * 125.00110 * 25 24 23 43 43 H 0.96694 * 113.99970 * 60.00547 * 26 25 24 44 44 H 1.48493 * 110.00281 * 180.02562 * 27 25 24 45 45 H 1.48502 * 110.00142 * 301.32121 * 27 25 24 46 46 H 1.07993 * 119.99331 * 180.25449 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4356 1.2863 -0.0005 5 8 4.1791 0.1474 0.0000 6 16 4.5789 -0.3303 1.3886 7 8 5.5581 -1.3313 1.1466 8 8 4.9077 0.8621 2.0882 9 6 3.0670 -1.0693 2.0659 10 1 2.2148 -0.3904 2.0376 11 6 2.7598 -2.4675 1.5040 12 6 3.6140 -3.0291 2.6564 13 1 4.6721 -3.1209 2.4109 14 6 3.0468 -4.2797 3.2770 15 6 1.6804 -4.4124 3.4388 16 6 1.1597 -5.5612 4.0045 17 6 2.0061 -6.5738 4.4160 18 6 3.3727 -6.4389 4.2591 19 6 3.8932 -5.2918 3.6898 20 6 3.2704 -1.7462 3.4315 21 6 4.0603 2.5240 -0.0011 22 35 5.9482 2.6305 -0.0025 23 6 3.3021 3.6809 -0.0016 24 6 1.9216 3.6061 -0.0021 25 6 1.1003 4.8697 -0.0033 26 8 0.3628 4.9594 1.2174 27 14 2.2289 6.3438 -0.1569 28 6 1.2929 2.3749 -0.0074 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5139 0.8900 32 1 1.7067 -2.7417 1.5673 33 1 3.1857 -2.6445 0.5164 34 1 1.0194 -3.6197 3.1208 35 1 0.0919 -5.6665 4.1275 36 1 1.5994 -7.4702 4.8606 37 1 4.0340 -7.2298 4.5809 38 1 4.9610 -5.1860 3.5675 39 1 4.1084 -1.3413 3.9990 40 1 2.3572 -1.8223 4.0215 41 1 3.7896 4.6446 -0.0024 42 1 0.4084 4.8525 -0.8454 43 1 0.9158 4.9793 2.0104 44 1 1.4312 7.5963 -0.1586 45 1 3.1980 6.3610 0.9682 46 1 0.2144 2.3195 -0.0120 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79621_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:17:30 Heat of formation + Delta-G solvation = -61.684229 kcal Electronic energy + Delta-G solvation = -35940.492952 eV Core-core repulsion = 31131.434709 eV Total energy + Delta-G solvation = -4809.058243 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -42.73350 -41.17039 -40.50448 -39.55231 -38.91519 -38.13174 -37.57000 -37.09073 -33.55606 -32.29246 -32.19485 -31.79839 -30.52948 -28.96252 -27.26664 -27.00295 -26.92948 -24.01495 -23.79257 -23.59902 -22.94781 -21.76068 -20.95488 -19.76635 -19.12998 -18.85523 -18.75077 -18.21542 -18.02402 -17.43259 -17.16341 -16.67609 -16.39496 -16.38561 -16.27782 -16.11051 -15.73892 -15.53283 -15.29475 -14.95231 -14.77823 -14.52901 -14.34141 -14.30804 -14.23633 -13.76480 -13.75761 -13.58763 -13.31690 -13.24179 -13.21292 -13.13653 -13.07623 -12.98959 -12.74902 -12.51448 -12.47586 -11.98571 -11.89797 -11.85818 -11.73217 -11.50035 -11.42451 -11.29502 -10.92598 -10.10929 -9.83115 -9.79847 -9.60504 -5.12778 -1.14792 -0.43557 -0.31918 0.21050 0.39919 0.48986 0.95128 1.02158 1.44131 1.66175 1.80070 1.86266 2.53037 2.74826 2.82835 2.95055 3.01070 3.15178 3.18007 3.35227 3.49513 3.54853 3.60193 3.67100 3.69220 3.86257 3.88293 3.95500 4.08601 4.10231 4.17038 4.22630 4.24572 4.28827 4.37269 4.41404 4.41963 4.48161 4.56236 4.58079 4.65685 4.71914 4.77536 4.78583 4.89910 5.05361 5.08323 5.16230 5.55495 5.62649 5.70408 5.71159 6.08326 6.12325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.301 6.301 3 C 0.137 3.863 4 C 0.062 3.938 5 O -0.642 6.642 6 S 2.595 3.405 7 O -0.914 6.914 8 O -0.940 6.940 9 C -0.649 4.649 10 H 0.145 0.855 11 C -0.078 4.078 12 C -0.095 4.095 13 H 0.119 0.881 14 C -0.070 4.070 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.087 4.087 21 C -0.027 4.027 22 Br 0.006 6.994 23 C -0.115 4.115 24 C -0.053 4.053 25 C -0.077 4.077 26 O -0.524 6.524 27 Si 0.682 3.318 28 C -0.156 4.156 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.154 0.846 42 H 0.129 0.871 43 H 0.380 0.620 44 H -0.249 1.249 45 H -0.251 1.251 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.110 1.044 -1.198 6.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.214 6.214 3 C 0.087 3.913 4 C 0.017 3.983 5 O -0.600 6.600 6 S 2.689 3.311 7 O -0.913 6.913 8 O -0.938 6.938 9 C -0.755 4.755 10 H 0.163 0.837 11 C -0.116 4.116 12 C -0.113 4.113 13 H 0.137 0.863 14 C -0.070 4.070 15 C -0.136 4.136 16 C -0.136 4.136 17 C -0.140 4.140 18 C -0.135 4.135 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.110 4.110 22 Br 0.093 6.907 23 C -0.135 4.135 24 C -0.055 4.055 25 C -0.187 4.187 26 O -0.331 6.331 27 Si 0.582 3.418 28 C -0.175 4.175 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.171 0.829 42 H 0.147 0.853 43 H 0.229 0.771 44 H -0.173 1.173 45 H -0.175 1.175 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.793 1.704 -1.461 5.292 hybrid contribution -1.487 -0.683 1.264 2.068 sum -6.280 1.021 -0.197 6.365 Atomic orbital electron populations 1.23343 0.76539 1.05391 1.02433 1.86230 1.22851 1.24676 1.87603 1.18891 0.89540 0.86452 0.96379 1.16796 0.85946 0.82031 1.13556 1.85766 1.71764 1.45131 1.57328 1.05682 0.76430 0.75354 0.73623 1.93643 1.54589 1.60955 1.82064 1.93706 1.82141 1.44021 1.73927 1.32477 1.23008 1.10083 1.09970 0.83683 1.22607 1.02163 0.88370 0.98455 1.22033 1.01583 0.91823 0.95840 0.86252 1.19537 0.93505 0.94993 0.98975 1.20988 0.94570 0.98032 1.00003 1.21154 0.99852 0.93855 0.98770 1.21214 0.93720 0.99094 1.00003 1.21205 0.95471 0.97751 0.99024 1.21151 0.99945 0.93461 0.98535 1.22648 1.03892 0.93860 0.92136 1.21816 0.93536 0.93234 1.02368 1.96902 0.98487 1.98635 1.96649 1.20944 0.92915 0.97384 1.02227 1.20332 0.93097 0.96037 0.96072 1.25110 1.02037 1.00854 0.90664 1.86625 1.35854 1.95410 1.15215 0.94849 0.79736 0.76656 0.90587 1.21176 1.01302 0.90015 1.05038 0.86991 0.91436 0.91690 0.87825 0.89674 0.86100 0.86008 0.86009 0.85837 0.85706 0.90200 0.87491 0.82886 0.85323 0.77147 1.17300 1.17498 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 101.05 0.99 0.91 16 2 O -0.30 0.41 7.76 -34.28 -0.27 0.14 16 3 C 0.14 -0.01 5.93 -39.13 -0.23 -0.25 16 4 C 0.06 0.15 4.84 -39.10 -0.19 -0.04 16 5 O -0.64 -2.37 9.23 -54.27 -0.50 -2.87 16 6 S 2.60 9.71 4.87 -107.50 -0.52 9.19 16 7 O -0.91 -5.65 16.35 -67.04 -1.10 -6.74 16 8 O -0.94 -4.78 14.49 -67.04 -0.97 -5.75 16 9 C -0.65 -0.16 3.38 -25.92 -0.09 -0.25 16 10 H 0.15 -0.21 6.02 -51.93 -0.31 -0.52 16 11 C -0.08 0.01 6.86 -25.78 -0.18 -0.16 16 12 C -0.09 -0.08 3.59 -90.82 -0.33 -0.40 16 13 H 0.12 0.20 6.83 -51.93 -0.35 -0.15 16 14 C -0.07 -0.08 5.29 -104.62 -0.55 -0.63 16 15 C -0.12 -0.03 8.60 -39.58 -0.34 -0.37 16 16 C -0.12 -0.04 10.05 -39.58 -0.40 -0.43 16 17 C -0.12 -0.07 10.05 -39.58 -0.40 -0.47 16 18 C -0.12 -0.11 10.05 -39.59 -0.40 -0.50 16 19 C -0.11 -0.16 9.71 -39.58 -0.38 -0.54 16 20 C -0.09 0.01 7.15 -25.93 -0.19 -0.17 16 21 C -0.03 -0.06 5.52 -39.40 -0.22 -0.28 16 22 Br 0.01 0.02 31.26 -68.01 -2.13 -2.10 16 23 C -0.12 0.05 8.40 -39.55 -0.33 -0.29 16 24 C -0.05 0.09 5.35 -104.61 -0.56 -0.47 16 25 C -0.08 0.21 2.80 36.00 0.10 0.31 16 26 O -0.52 0.81 12.84 -35.23 -0.45 0.36 16 27 Si 0.68 -1.77 29.88 -169.99 -5.08 -6.85 16 28 C -0.16 0.30 8.67 -39.45 -0.34 -0.05 16 29 H 0.11 -0.69 8.14 -51.93 -0.42 -1.11 16 30 H 0.07 -0.38 7.65 -51.93 -0.40 -0.77 16 31 H 0.06 -0.38 7.68 -51.93 -0.40 -0.77 16 32 H 0.10 -0.21 6.34 -51.93 -0.33 -0.54 16 33 H 0.08 0.02 8.10 -51.93 -0.42 -0.40 16 34 H 0.12 -0.21 6.69 -52.48 -0.35 -0.56 16 35 H 0.12 -0.18 8.06 -52.49 -0.42 -0.61 16 36 H 0.12 -0.13 8.06 -52.48 -0.42 -0.55 16 37 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 38 H 0.12 0.03 8.05 -52.49 -0.42 -0.39 16 39 H 0.08 -0.04 8.10 -51.93 -0.42 -0.46 16 40 H 0.11 -0.17 7.72 -51.93 -0.40 -0.57 16 41 H 0.15 -0.31 4.83 -52.49 -0.25 -0.57 16 42 H 0.13 -0.54 7.96 -51.93 -0.41 -0.95 16 43 H 0.38 -1.53 8.70 45.56 0.40 -1.14 16 44 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 45 H -0.25 0.15 7.01 56.52 0.40 0.54 16 46 H 0.16 -0.64 6.30 -52.49 -0.33 -0.97 16 LS Contribution 400.10 15.07 6.03 6.03 Total: 0.00 -9.09 400.10 -14.32 -23.40 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: -5.30 Total: -10.74 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -4.03 Total: -4.08 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -3.29 Total: -14.85 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: -5.08 Total: -6.85 kcal Atomic # 16 Polarization: 9.71 SS G_CDS: -0.52 Total: 9.19 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.13 Total: -2.10 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -9.09 -14.32 -23.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79621_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.282 kcal (2) G-P(sol) polarization free energy of solvation -9.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds