Wall clock time and date at job start Mon Mar 8 2021 12:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.36008 * 117.00211 * 2 1 4 4 C 1.39116 * 120.06980 * 180.02562 * 3 2 1 5 5 O 1.36011 * 120.07243 * 359.94983 * 4 3 2 6 6 S 1.52196 * 113.99936 * 267.00250 * 5 4 3 7 7 O 1.42104 * 104.27950 * 191.94819 * 6 5 4 8 8 O 1.42101 * 104.27982 * 319.80273 * 6 5 4 9 9 C 1.81401 * 104.45145 * 75.87582 * 6 5 4 10 10 H 1.08994 * 112.84699 * 305.75425 * 9 6 5 11 11 C 1.53785 * 113.61074 * 76.94400 * 9 6 5 12 12 C 1.54049 * 86.98222 * 89.16613 * 11 9 6 13 13 H 1.09004 * 113.61211 * 270.87548 * 12 11 9 14 14 C 1.50702 * 113.69479 * 139.99272 * 12 11 9 15 15 C 1.38234 * 119.99608 * 322.18783 * 14 12 11 16 16 C 1.38237 * 120.00034 * 179.81485 * 15 14 12 17 17 C 1.38239 * 119.99482 * 0.39427 * 16 15 14 18 18 C 1.38227 * 120.00415 * 359.86118 * 17 16 15 19 19 C 1.38233 * 120.00123 * 359.95096 * 18 17 16 20 20 C 1.53772 * 113.61692 * 174.55160 * 9 6 5 21 21 C 1.38647 * 119.84703 * 179.97438 * 4 3 2 22 22 Br 1.89097 * 120.00675 * 180.02562 * 21 4 3 23 23 C 1.38313 * 119.98149 * 359.97438 * 21 4 3 24 24 C 1.38254 * 120.14070 * 359.97438 * 23 21 4 25 25 C 1.50698 * 119.92521 * 180.02562 * 24 23 21 26 26 O 1.42898 * 109.46682 * 244.99801 * 25 24 23 27 27 Si 1.86291 * 109.47233 * 5.00120 * 25 24 23 28 28 C 1.38244 * 120.14932 * 359.74720 * 24 23 21 29 29 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47725 * 59.99879 * 1 2 3 31 31 H 1.09005 * 109.47318 * 300.00179 * 1 2 3 32 32 H 1.09003 * 113.61085 * 203.66742 * 11 9 6 33 33 H 1.09001 * 113.61657 * 334.57103 * 11 9 6 34 34 H 1.08005 * 120.00266 * 359.97438 * 15 14 12 35 35 H 1.07994 * 120.00352 * 180.23194 * 16 15 14 36 36 H 1.08007 * 119.99679 * 179.83066 * 17 16 15 37 37 H 1.08001 * 120.00376 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.00754 * 179.97438 * 19 18 17 39 39 H 1.09002 * 113.61463 * 25.43344 * 20 9 6 40 40 H 1.08996 * 113.61725 * 156.24863 * 20 9 6 41 41 H 1.07999 * 119.93129 * 180.02562 * 23 21 4 42 42 H 1.09001 * 109.47080 * 125.00110 * 25 24 23 43 43 H 0.96694 * 113.99970 * 60.00547 * 26 25 24 44 44 H 1.48493 * 110.00281 * 180.02562 * 27 25 24 45 45 H 1.48502 * 110.00142 * 301.32121 * 27 25 24 46 46 H 1.07993 * 119.99331 * 180.25449 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4356 1.2863 -0.0005 5 8 4.1791 0.1474 0.0000 6 16 4.5789 -0.3303 1.3886 7 8 5.5581 -1.3313 1.1466 8 8 4.9077 0.8621 2.0882 9 6 3.0670 -1.0693 2.0659 10 1 2.2148 -0.3904 2.0376 11 6 2.7598 -2.4675 1.5040 12 6 3.6140 -3.0291 2.6564 13 1 4.6721 -3.1209 2.4109 14 6 3.0468 -4.2797 3.2770 15 6 1.6804 -4.4124 3.4388 16 6 1.1597 -5.5612 4.0045 17 6 2.0061 -6.5738 4.4160 18 6 3.3727 -6.4389 4.2591 19 6 3.8932 -5.2918 3.6898 20 6 3.2704 -1.7462 3.4315 21 6 4.0603 2.5240 -0.0011 22 35 5.9482 2.6305 -0.0025 23 6 3.3021 3.6809 -0.0016 24 6 1.9216 3.6061 -0.0021 25 6 1.1003 4.8697 -0.0033 26 8 0.3628 4.9594 1.2174 27 14 2.2289 6.3438 -0.1569 28 6 1.2929 2.3749 -0.0074 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 0.5139 0.8900 32 1 1.7067 -2.7417 1.5673 33 1 3.1857 -2.6445 0.5164 34 1 1.0194 -3.6197 3.1208 35 1 0.0919 -5.6665 4.1275 36 1 1.5994 -7.4702 4.8606 37 1 4.0340 -7.2298 4.5809 38 1 4.9610 -5.1860 3.5675 39 1 4.1084 -1.3413 3.9990 40 1 2.3572 -1.8223 4.0215 41 1 3.7896 4.6446 -0.0024 42 1 0.4084 4.8525 -0.8454 43 1 0.9158 4.9793 2.0104 44 1 1.4312 7.5963 -0.1586 45 1 3.1980 6.3610 0.9682 46 1 0.2144 2.3195 -0.0120 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79621_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:17:29 Heat of formation + Delta-G solvation = -59.052602 kcal Electronic energy + Delta-G solvation = -35940.378837 eV Core-core repulsion = 31131.434709 eV Total energy + Delta-G solvation = -4808.944127 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.73950 -41.17544 -40.48467 -39.40014 -38.94013 -38.37789 -37.45059 -37.38133 -33.56841 -32.26867 -32.13046 -31.78167 -30.53802 -28.61339 -27.21204 -26.96295 -26.93067 -23.95248 -23.79152 -23.54581 -22.95150 -21.79865 -21.00347 -19.78646 -19.25429 -18.84244 -18.65626 -18.22050 -17.95731 -17.41863 -16.95923 -16.71391 -16.36747 -16.27896 -16.21495 -16.01300 -15.74130 -15.45127 -15.27072 -14.98390 -14.76025 -14.53892 -14.38172 -14.29033 -14.21496 -13.78523 -13.72432 -13.64927 -13.52656 -13.34791 -13.27060 -13.21003 -13.03549 -12.68556 -12.57991 -12.49351 -12.40116 -11.97286 -11.86804 -11.85066 -11.73096 -11.58364 -11.47173 -11.34542 -10.76529 -10.13851 -9.83117 -9.70812 -9.60937 -4.94370 -1.26904 -0.45205 -0.26854 0.13932 0.39469 0.48844 0.82376 1.21242 1.58205 1.82581 1.94317 1.96452 2.37590 2.65230 2.78868 2.94478 3.10546 3.17355 3.37522 3.42647 3.49627 3.55975 3.68761 3.73078 3.79706 3.98686 4.10442 4.14765 4.21633 4.28291 4.31420 4.36022 4.40481 4.44839 4.46739 4.53927 4.58025 4.58735 4.61222 4.66189 4.73890 4.77719 4.79134 4.90836 5.04363 5.07396 5.11787 5.17080 5.56594 5.63287 5.69730 5.92326 6.10615 6.41769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.310 6.310 3 C 0.143 3.857 4 C 0.031 3.969 5 O -0.651 6.651 6 S 2.584 3.416 7 O -0.956 6.956 8 O -0.963 6.963 9 C -0.626 4.626 10 H 0.169 0.831 11 C -0.075 4.075 12 C -0.103 4.103 13 H 0.099 0.901 14 C -0.078 4.078 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.134 4.134 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.046 4.046 22 Br -0.022 7.022 23 C -0.118 4.118 24 C -0.043 4.043 25 C -0.069 4.069 26 O -0.535 6.535 27 Si 0.738 3.262 28 C -0.144 4.144 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.131 0.869 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.390 0.610 44 H -0.291 1.291 45 H -0.282 1.282 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.913 0.958 -1.130 10.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.223 6.223 3 C 0.093 3.907 4 C -0.014 4.014 5 O -0.609 6.609 6 S 2.682 3.318 7 O -0.954 6.954 8 O -0.962 6.962 9 C -0.736 4.736 10 H 0.187 0.813 11 C -0.113 4.113 12 C -0.121 4.121 13 H 0.118 0.882 14 C -0.078 4.078 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.152 4.152 18 C -0.147 4.147 19 C -0.153 4.153 20 C -0.126 4.126 21 C -0.129 4.129 22 Br 0.065 6.935 23 C -0.137 4.137 24 C -0.045 4.045 25 C -0.179 4.179 26 O -0.343 6.343 27 Si 0.643 3.357 28 C -0.163 4.163 29 H 0.146 0.854 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.096 0.904 40 H 0.149 0.851 41 H 0.180 0.820 42 H 0.171 0.829 43 H 0.240 0.760 44 H -0.218 1.218 45 H -0.208 1.208 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.554 1.617 -1.410 8.819 hybrid contribution -0.424 -0.626 1.267 1.475 sum -8.978 0.991 -0.143 9.033 Atomic orbital electron populations 1.23725 0.74512 1.07044 1.03802 1.86235 1.24876 1.24046 1.87164 1.18905 0.88620 0.87592 0.95608 1.17171 0.87106 0.81514 1.15644 1.85735 1.72413 1.45852 1.56928 1.05819 0.77523 0.74799 0.73622 1.93586 1.57325 1.61692 1.82790 1.93664 1.83285 1.44879 1.74326 1.32175 1.20915 1.10551 1.10008 0.81316 1.22737 1.03457 0.87442 0.97663 1.22017 1.00866 0.92460 0.96806 0.88245 1.19631 0.94159 0.94834 0.99190 1.21254 0.94269 0.98723 0.99541 1.21473 1.00912 0.93619 0.98205 1.21490 0.93640 0.99952 1.00092 1.21403 0.96172 0.97912 0.99225 1.21330 1.00256 0.94242 0.99480 1.22801 1.04945 0.92855 0.91994 1.21915 0.92329 0.94322 1.04300 1.96851 1.01167 1.98652 1.96872 1.21110 0.93644 0.96998 1.01959 1.20436 0.92356 0.96768 0.94938 1.25102 1.02111 0.99431 0.91230 1.86610 1.36561 1.95272 1.15900 0.94146 0.77600 0.74729 0.89180 1.21496 1.02561 0.88995 1.03227 0.85369 0.90310 0.90044 0.84959 0.90441 0.83679 0.83997 0.84659 0.84998 0.85937 0.90449 0.85057 0.82026 0.82942 0.76018 1.21815 1.20802 0.79673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.31 1.51 7.76 -79.76 -0.62 0.90 16 3 C 0.14 -0.23 5.93 22.56 0.13 -0.10 16 4 C 0.03 0.16 4.84 22.58 0.11 0.27 16 5 O -0.65 -5.90 9.23 -60.70 -0.56 -6.46 16 6 S 2.58 24.17 4.87 -56.49 -0.28 23.89 16 7 O -0.96 -14.95 16.35 -118.57 -1.94 -16.89 16 8 O -0.96 -11.95 14.49 -118.57 -1.72 -13.67 16 9 C -0.63 -0.01 3.38 31.12 0.11 0.09 16 10 H 0.17 -0.82 6.02 -2.39 -0.01 -0.83 16 11 C -0.08 0.08 6.86 31.21 0.21 0.30 16 12 C -0.10 -0.22 3.59 -10.92 -0.04 -0.26 16 13 H 0.10 0.60 6.83 -2.39 -0.02 0.58 16 14 C -0.08 -0.17 5.29 -19.86 -0.11 -0.28 16 15 C -0.12 0.14 8.60 22.27 0.19 0.33 16 16 C -0.12 0.12 10.05 22.27 0.22 0.35 16 17 C -0.13 -0.09 10.05 22.27 0.22 0.14 16 18 C -0.13 -0.31 10.05 22.27 0.22 -0.08 16 19 C -0.14 -0.53 9.71 22.27 0.22 -0.31 16 20 C -0.09 0.07 7.15 31.12 0.22 0.29 16 21 C -0.05 -0.25 5.52 22.39 0.12 -0.13 16 22 Br -0.02 -0.20 31.26 -20.37 -0.64 -0.84 16 23 C -0.12 0.10 8.40 22.29 0.19 0.28 16 24 C -0.04 0.22 5.35 -19.86 -0.11 0.12 16 25 C -0.07 0.53 2.80 71.24 0.20 0.73 16 26 O -0.54 2.89 12.84 -148.98 -1.91 0.98 16 27 Si 0.74 -3.96 29.88 68.60 2.05 -1.91 16 28 C -0.14 0.92 8.67 22.36 0.19 1.12 16 29 H 0.13 -2.06 8.14 -2.39 -0.02 -2.08 16 30 H 0.08 -1.17 7.65 -2.39 -0.02 -1.19 16 31 H 0.08 -1.29 7.68 -2.38 -0.02 -1.31 16 32 H 0.13 -0.92 6.34 -2.39 -0.02 -0.93 16 33 H 0.08 0.07 8.10 -2.39 -0.02 0.05 16 34 H 0.15 -0.99 6.69 -2.91 -0.02 -1.01 16 35 H 0.14 -0.78 8.06 -2.91 -0.02 -0.80 16 36 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 37 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 38 H 0.12 0.36 8.05 -2.91 -0.02 0.34 16 39 H 0.08 -0.01 8.10 -2.39 -0.02 -0.03 16 40 H 0.13 -0.72 7.72 -2.39 -0.02 -0.74 16 41 H 0.16 -0.58 4.83 -2.91 -0.01 -0.60 16 42 H 0.15 -1.80 7.96 -2.39 -0.02 -1.82 16 43 H 0.39 -3.81 8.70 -74.06 -0.64 -4.46 16 44 H -0.29 -0.55 7.11 99.48 0.71 0.16 16 45 H -0.28 0.09 7.01 99.48 0.70 0.78 16 46 H 0.19 -2.32 6.30 -2.91 -0.02 -2.34 16 Total: 0.00 -25.07 400.10 -1.74 -26.81 By element: Atomic # 1 Polarization: -17.18 SS G_CDS: 0.44 Total: -16.74 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 3.43 Total: 3.93 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -6.75 Total: -35.14 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.05 Total: -1.91 kcal Atomic # 16 Polarization: 24.17 SS G_CDS: -0.28 Total: 23.89 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.64 Total: -0.84 kcal Total: -25.07 -1.74 -26.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79621_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.243 kcal (2) G-P(sol) polarization free energy of solvation -25.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds