Wall clock time and date at job start Mon Mar 8 2021 13:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.46771 * 2 1 4 4 C 1.34227 * 117.00007 * 179.97438 * 3 2 1 5 5 O 1.20834 * 119.99757 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00485 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.46867 * 300.00204 * 6 4 3 8 8 C 1.53003 * 109.46944 * 59.99765 * 6 4 3 9 9 C 1.53000 * 109.47153 * 180.02562 * 8 6 4 10 10 C 1.53007 * 109.46692 * 300.00343 * 9 8 6 11 11 F 1.39902 * 109.47081 * 299.99543 * 10 9 8 12 12 C 1.53000 * 109.46692 * 179.97438 * 10 9 8 13 13 S 1.81400 * 109.47376 * 59.99955 * 12 10 9 14 14 O 1.42105 * 110.54591 * 68.37135 * 13 12 10 15 15 O 1.42106 * 110.54258 * 291.62338 * 13 12 10 16 16 O 1.52200 * 104.45344 * 179.97438 * 13 12 10 17 17 C 1.35981 * 113.99820 * 74.99844 * 16 13 12 18 18 C 1.38673 * 120.00220 * 90.00002 * 17 16 13 19 19 C 1.50706 * 119.99989 * 359.97438 * 18 17 16 20 20 O 1.42900 * 109.46709 * 75.02193 * 19 18 17 21 21 Si 1.86296 * 109.47202 * 195.01978 * 19 18 17 22 22 C 1.38157 * 120.00322 * 180.02562 * 18 17 16 23 23 C 1.38675 * 119.99825 * 359.97438 * 22 18 17 24 24 O 1.35982 * 119.99926 * 179.97438 * 23 22 18 25 25 C 1.42899 * 117.00071 * 180.02562 * 24 23 22 26 26 C 1.38723 * 120.00072 * 0.02562 * 23 22 18 27 27 C 1.38108 * 119.99987 * 0.25570 * 26 23 22 28 28 C 1.52991 * 109.47350 * 60.00017 * 10 9 8 29 29 C 1.52997 * 109.47483 * 180.02562 * 6 4 3 30 30 H 1.09003 * 109.47066 * 60.00089 * 1 2 3 31 31 H 1.09005 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47667 * 299.99860 * 1 2 3 33 33 H 1.08999 * 109.47377 * 240.00803 * 2 1 3 34 34 H 1.09003 * 109.47066 * 119.99911 * 2 1 3 35 35 H 1.08998 * 109.47213 * 300.00390 * 8 6 4 36 36 H 1.09004 * 109.46980 * 60.00508 * 8 6 4 37 37 H 1.08998 * 109.47449 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.47130 * 59.99742 * 9 8 6 39 39 H 1.08996 * 109.47647 * 299.99301 * 12 10 9 40 40 H 1.09004 * 109.47331 * 179.97438 * 12 10 9 41 41 H 1.08992 * 109.47248 * 315.02577 * 19 18 17 42 42 H 0.96701 * 114.00211 * 59.99677 * 20 19 18 43 43 H 1.48499 * 110.00036 * 58.68703 * 21 19 18 44 44 H 1.48502 * 109.99622 * 180.02562 * 21 19 18 45 45 H 1.08005 * 120.00114 * 180.02562 * 22 18 17 46 46 H 1.08997 * 109.47497 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.47100 * 300.00148 * 25 24 23 48 48 H 1.08998 * 109.47131 * 60.00057 * 25 24 23 49 49 H 1.08002 * 119.99739 * 179.97438 * 26 23 22 50 50 H 1.07998 * 120.00350 * 179.74777 * 27 26 23 51 51 H 1.08997 * 109.47508 * 59.99966 * 28 10 9 52 52 H 1.09001 * 109.47389 * 179.97438 * 28 10 9 53 53 H 1.08998 * 109.46793 * 59.99836 * 29 6 4 54 54 H 1.08997 * 109.46948 * 299.99710 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5849 3.4699 -0.8888 8 6 3.4485 3.6841 1.2505 9 6 4.0328 5.0982 1.2508 10 6 5.5608 5.0185 1.2510 11 9 5.9920 4.3355 2.3933 12 6 6.1451 6.4326 1.2507 13 16 5.5856 7.3184 2.7315 14 8 6.1695 6.7569 3.8990 15 8 4.1896 7.5749 2.6615 16 8 6.2267 8.6940 2.6162 17 6 5.6369 9.5037 1.6966 18 6 4.5920 10.3342 2.0727 19 6 4.1096 10.3390 3.5005 20 8 5.0473 11.0428 4.3176 21 14 2.4506 11.1815 3.5927 22 6 3.9924 11.1565 1.1383 23 6 4.4359 11.1517 -0.1756 24 8 3.8454 11.9607 -1.0954 25 6 4.3527 11.9038 -2.4301 26 6 5.4811 10.3209 -0.5519 27 6 6.0766 9.4947 0.3809 28 6 6.0328 4.2720 0.0018 29 6 5.4485 2.8575 0.0010 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3601 3.7411 1.2501 36 1 3.7842 3.1517 2.1404 37 1 3.6969 5.6299 2.1410 38 1 3.6969 5.6303 0.3609 39 1 5.8092 6.9644 0.3606 40 1 7.2337 6.3759 1.2513 41 1 4.0164 9.3129 3.8559 42 1 5.1807 11.9648 4.0583 43 1 1.4746 10.4778 2.7223 44 1 1.9643 11.1933 4.9958 45 1 3.1789 11.8037 1.4314 46 1 3.7953 12.5966 -3.0605 47 1 5.4069 12.1808 -2.4303 48 1 4.2431 10.8910 -2.8176 49 1 5.8262 10.3169 -1.5753 50 1 6.8877 8.8449 0.0872 51 1 5.6969 4.8041 -0.8882 52 1 7.1214 4.2157 0.0017 53 1 5.7843 2.3258 -0.8892 54 1 5.7845 2.3250 0.8908 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79633_16464698.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:32:24 Heat of formation + Delta-G solvation = -275.660994 kcal Electronic energy + Delta-G solvation = -43409.571473 eV Core-core repulsion = 37742.299709 eV Total energy + Delta-G solvation = -5667.271764 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.147 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -49.15011 -42.51640 -41.81858 -40.68663 -39.16215 -38.68473 -38.44634 -37.70870 -37.52453 -37.20774 -34.29379 -32.99213 -32.63614 -32.11419 -31.01753 -29.13712 -28.27627 -26.86150 -25.22423 -24.52679 -24.15085 -23.52686 -23.06006 -22.02102 -21.56976 -20.90180 -19.77717 -19.33397 -18.96448 -18.84050 -18.78945 -17.86990 -17.80581 -17.73364 -17.30746 -17.12608 -16.90812 -16.72245 -16.54757 -16.31945 -16.05799 -15.87108 -15.45721 -15.30219 -15.13901 -15.02661 -14.92954 -14.56109 -14.50991 -14.33249 -14.24933 -14.05694 -13.86692 -13.81483 -13.75512 -13.53858 -13.48179 -13.36715 -13.22936 -13.18663 -13.16799 -13.09976 -12.95433 -12.65291 -12.52493 -12.38943 -12.22176 -12.16170 -12.08967 -11.93139 -11.91184 -11.75246 -11.59748 -11.38990 -11.14233 -10.57979 -10.28570 -9.40086 -5.11370 -1.27917 -0.08807 -0.04052 0.89011 1.03135 1.15070 1.56759 1.59854 1.92364 2.18756 2.25298 2.30537 2.66060 2.78550 3.06704 3.25204 3.29973 3.34165 3.47713 3.49831 3.57755 3.62865 3.68891 3.76054 3.92413 3.93780 3.98181 3.99981 4.01924 4.08164 4.11538 4.21684 4.24291 4.27320 4.28550 4.31847 4.43555 4.50360 4.50988 4.59779 4.68016 4.75013 4.76531 4.85049 4.85379 4.87867 4.90190 4.96210 4.97055 4.99326 5.02690 5.05087 5.09533 5.21415 5.38065 5.39382 6.25857 6.59783 6.67771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.076 4.076 7 H 0.151 0.849 8 C -0.111 4.111 9 C -0.174 4.174 10 C 0.121 3.879 11 F -0.217 7.217 12 C -0.662 4.662 13 S 2.574 3.426 14 O -0.971 6.971 15 O -0.964 6.964 16 O -0.657 6.657 17 C 0.011 3.989 18 C -0.062 4.062 19 C -0.111 4.111 20 O -0.551 6.551 21 Si 0.793 3.207 22 C -0.141 4.141 23 C 0.157 3.843 24 O -0.320 6.320 25 C 0.009 3.991 26 C -0.176 4.176 27 C -0.080 4.080 28 C -0.120 4.120 29 C -0.111 4.111 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.138 0.862 39 H 0.200 0.800 40 H 0.180 0.820 41 H 0.095 0.905 42 H 0.398 0.602 43 H -0.272 1.272 44 H -0.294 1.294 45 H 0.166 0.834 46 H 0.116 0.884 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.185 0.815 50 H 0.182 0.818 51 H 0.132 0.868 52 H 0.099 0.901 53 H 0.090 0.910 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.339 7.314 -14.268 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.094 4.094 7 H 0.168 0.832 8 C -0.149 4.149 9 C -0.211 4.211 10 C 0.101 3.899 11 F -0.198 7.198 12 C -0.791 4.791 13 S 2.674 3.326 14 O -0.970 6.970 15 O -0.963 6.963 16 O -0.616 6.616 17 C -0.031 4.031 18 C -0.065 4.065 19 C -0.219 4.219 20 O -0.359 6.359 21 Si 0.696 3.304 22 C -0.159 4.159 23 C 0.109 3.891 24 O -0.232 6.232 25 C -0.085 4.085 26 C -0.195 4.195 27 C -0.100 4.100 28 C -0.158 4.158 29 C -0.149 4.149 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.218 0.782 40 H 0.198 0.802 41 H 0.113 0.887 42 H 0.248 0.752 43 H -0.198 1.198 44 H -0.221 1.221 45 H 0.183 0.817 46 H 0.134 0.866 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.202 0.798 50 H 0.200 0.800 51 H 0.150 0.850 52 H 0.118 0.882 53 H 0.109 0.891 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.243 6.646 -12.929 14.709 hybrid contribution 1.048 -1.765 0.503 2.113 sum -1.194 4.882 -12.427 13.404 Atomic orbital electron populations 1.21822 0.90606 1.04264 1.03789 1.23249 0.96975 0.79408 1.02391 1.86511 1.24191 1.33401 1.83447 1.24275 0.80609 0.93278 0.71065 1.90677 1.61158 1.44463 1.46676 1.21285 0.96496 0.88535 1.03107 0.83192 1.21468 1.02798 0.94385 0.96218 1.22758 0.91845 0.98981 1.07508 1.20928 0.95292 0.88159 0.85488 1.92946 1.91426 1.81832 1.53557 1.31407 1.16104 1.07983 1.23653 1.06013 0.74383 0.74506 0.77665 1.93616 1.78817 1.77510 1.47024 1.93581 1.33492 1.81646 1.87548 1.85774 1.69663 1.42661 1.63526 1.18158 0.98390 0.99173 0.87395 1.20241 0.94294 0.95274 0.96668 1.25675 1.06042 1.02073 0.88089 1.86551 1.64158 1.29844 1.55349 0.94308 0.71172 0.86757 0.78189 1.20282 1.03016 1.02083 0.90511 1.19169 0.91291 0.89417 0.89176 1.86163 1.57831 1.58682 1.20567 1.23542 1.01535 1.04705 0.78699 1.21583 0.97477 0.97946 1.02477 1.21561 0.99593 0.99975 0.88844 1.22165 1.03164 0.94423 0.96089 1.21485 0.91781 0.97662 1.03936 0.90905 0.88612 0.91461 0.91120 0.91909 0.88226 0.92662 0.90315 0.84401 0.78240 0.80232 0.88731 0.75170 1.19809 1.22136 0.81720 0.86589 0.90638 0.90472 0.79799 0.80033 0.84998 0.88208 0.89134 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.41 10.29 71.98 0.74 1.15 16 2 C 0.05 0.11 6.19 71.98 0.45 0.55 16 3 O -0.36 -1.46 10.12 -51.39 -0.52 -1.98 16 4 C 0.46 2.42 7.26 71.24 0.52 2.93 16 5 O -0.54 -6.47 15.73 21.94 0.35 -6.13 16 6 C -0.08 0.14 2.63 -11.54 -0.03 0.11 16 7 H 0.15 -1.37 8.14 -2.38 -0.02 -1.39 16 8 C -0.11 0.01 5.01 30.60 0.15 0.17 16 9 C -0.17 0.31 4.52 30.60 0.14 0.45 16 10 C 0.12 -0.16 0.88 -10.79 -0.01 -0.17 16 11 F -0.22 -1.80 15.05 44.97 0.68 -1.12 16 12 C -0.66 3.52 4.73 71.98 0.34 3.86 16 13 S 2.57 19.07 4.27 -56.49 -0.24 18.83 16 14 O -0.97 -17.78 17.61 -118.57 -2.09 -19.87 16 15 O -0.96 -8.86 11.86 -118.57 -1.41 -10.27 16 16 O -0.66 -4.33 9.47 -62.43 -0.59 -4.92 16 17 C 0.01 0.02 4.79 22.49 0.11 0.12 16 18 C -0.06 -0.16 4.67 -19.78 -0.09 -0.25 16 19 C -0.11 -0.74 2.23 71.24 0.16 -0.58 16 20 O -0.55 -3.59 12.88 -148.98 -1.92 -5.51 16 21 Si 0.79 1.45 29.92 68.60 2.05 3.50 16 22 C -0.14 0.36 8.59 22.35 0.19 0.55 16 23 C 0.16 -0.88 6.69 22.49 0.15 -0.73 16 24 O -0.32 2.04 10.50 -93.35 -0.98 1.06 16 25 C 0.01 -0.12 9.81 113.37 1.11 0.99 16 26 C -0.18 1.77 9.03 22.35 0.20 1.97 16 27 C -0.08 0.61 8.45 22.36 0.19 0.80 16 28 C -0.12 0.87 5.00 30.61 0.15 1.03 16 29 C -0.11 0.17 4.38 30.61 0.13 0.30 16 30 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.10 -0.53 8.14 -2.38 -0.02 -0.55 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 34 H 0.06 0.22 8.13 -2.39 -0.02 0.20 16 35 H 0.10 -0.18 8.11 -2.39 -0.02 -0.20 16 36 H 0.05 0.26 7.80 -2.38 -0.02 0.24 16 37 H 0.08 0.23 5.46 -2.39 -0.01 0.22 16 38 H 0.14 -1.32 8.14 -2.39 -0.02 -1.34 16 39 H 0.20 -3.03 6.58 -2.39 -0.02 -3.04 16 40 H 0.18 -1.81 8.14 -2.39 -0.02 -1.83 16 41 H 0.10 1.19 5.42 -2.39 -0.01 1.18 16 42 H 0.40 -1.68 8.70 -74.06 -0.64 -2.32 16 43 H -0.27 -1.53 7.11 99.48 0.71 -0.82 16 44 H -0.29 -2.63 7.11 99.48 0.71 -1.92 16 45 H 0.17 -1.04 5.13 -2.91 -0.01 -1.06 16 46 H 0.12 -1.76 8.14 -2.39 -0.02 -1.78 16 47 H 0.08 -1.21 7.66 -2.39 -0.02 -1.23 16 48 H 0.08 -1.28 7.66 -2.39 -0.02 -1.30 16 49 H 0.18 -3.21 6.29 -2.91 -0.02 -3.23 16 50 H 0.18 -2.83 7.46 -2.91 -0.02 -2.85 16 51 H 0.13 -2.01 8.14 -2.39 -0.02 -2.03 16 52 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 53 H 0.09 -0.22 8.10 -2.39 -0.02 -0.24 16 54 H 0.05 0.26 7.76 -2.39 -0.02 0.24 16 Total: 0.00 -39.69 438.45 0.28 -39.41 By element: Atomic # 1 Polarization: -26.61 SS G_CDS: 0.35 Total: -26.26 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 4.60 Total: 13.26 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -7.16 Total: -47.62 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.68 Total: -1.12 kcal Atomic # 14 Polarization: 1.45 SS G_CDS: 2.05 Total: 3.50 kcal Atomic # 16 Polarization: 19.07 SS G_CDS: -0.24 Total: 18.83 kcal Total: -39.69 0.28 -39.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79633_16464698.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.248 kcal (2) G-P(sol) polarization free energy of solvation -39.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds