Wall clock time and date at job start Mon Mar 8 2021 13:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34234 * 117.00077 * 2 1 4 4 O 1.20825 * 119.99640 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00486 * 180.02562 * 3 2 1 6 6 H 1.09010 * 112.84861 * 311.20008 * 5 3 2 7 7 C 1.53780 * 113.69503 * 82.46270 * 5 3 2 8 8 C 1.53776 * 87.08406 * 139.99531 * 7 5 3 9 9 H 1.09002 * 113.69060 * 89.12580 * 8 7 5 10 10 S 1.81402 * 113.61648 * 220.02530 * 8 7 5 11 11 O 1.42101 * 110.54302 * 30.98269 * 10 8 7 12 12 O 1.42097 * 110.54173 * 167.73384 * 10 8 7 13 13 O 1.52199 * 104.44773 * 279.35752 * 10 8 7 14 14 C 1.36093 * 113.99960 * 284.77500 * 13 10 8 15 15 C 1.38982 * 120.08562 * 276.28462 * 14 13 10 16 16 O 1.35993 * 120.04659 * 0.03514 * 15 14 13 17 17 C 1.42900 * 117.00470 * 179.97438 * 16 15 14 18 18 C 1.38669 * 119.90910 * 179.76842 * 15 14 13 19 19 C 1.38233 * 120.08791 * 0.51680 * 18 15 14 20 20 C 1.50696 * 119.90779 * 179.76751 * 19 18 15 21 21 O 1.42905 * 109.47098 * 244.97483 * 20 19 18 22 22 Si 1.86303 * 109.47425 * 4.97566 * 20 19 18 23 23 C 1.38226 * 120.17932 * 359.74048 * 19 18 15 24 24 C 1.38666 * 120.08841 * 0.02562 * 23 19 18 25 25 O 1.35999 * 120.04341 * 180.02562 * 24 23 19 26 26 C 1.42901 * 117.00191 * 359.97438 * 25 24 23 27 27 C 1.53781 * 113.61882 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.47190 * 299.99273 * 1 2 3 29 29 H 1.09003 * 109.47891 * 59.99684 * 1 2 3 30 30 H 1.09003 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09008 * 113.60885 * 25.44890 * 7 5 3 32 32 H 1.09003 * 113.61653 * 254.54628 * 7 5 3 33 33 H 1.09006 * 109.46613 * 59.99621 * 17 16 15 34 34 H 1.08996 * 109.47606 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.47110 * 299.99880 * 17 16 15 36 36 H 1.07995 * 119.95581 * 180.28240 * 18 15 14 37 37 H 1.08998 * 109.47303 * 124.98023 * 20 19 18 38 38 H 0.96699 * 114.00193 * 180.02562 * 21 20 19 39 39 H 1.48500 * 109.99747 * 299.99902 * 22 20 19 40 40 H 1.48489 * 110.00018 * 61.32037 * 22 20 19 41 41 H 1.07996 * 119.95709 * 180.02562 * 23 19 18 42 42 H 1.08992 * 109.47448 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.47103 * 300.00340 * 26 25 24 44 44 H 1.09001 * 109.46692 * 59.99732 * 26 25 24 45 45 H 1.08998 * 113.61903 * 105.38355 * 27 5 3 46 46 H 1.09004 * 113.60974 * 334.48019 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1925 1.1232 -1.3969 8 6 5.1819 2.2266 -0.9868 9 1 6.0818 1.8495 -0.5009 10 16 5.5411 3.4104 -2.3137 11 8 4.4150 3.5591 -3.1675 12 8 6.2248 4.5445 -1.7985 13 8 6.5779 2.7081 -3.1787 14 6 7.8252 2.6802 -2.6350 15 6 8.6757 3.7689 -2.7864 16 8 8.2627 4.8647 -3.4778 17 6 9.1892 5.9465 -3.5930 18 6 9.9441 3.7384 -2.2268 19 6 10.3668 2.6230 -1.5283 20 6 11.7480 2.5922 -0.9263 21 8 12.5246 1.5784 -1.5675 22 14 12.5676 4.2478 -1.1673 23 6 9.5259 1.5361 -1.3800 24 6 8.2542 1.5605 -1.9324 25 8 7.4274 0.4907 -1.7855 26 6 7.9343 -0.6250 -1.0504 27 6 4.1076 2.7143 0.0001 28 1 -0.3634 0.5137 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5255 1.4144 -2.2085 32 1 4.6630 0.1538 -1.5614 33 1 10.0893 5.6012 -4.1018 34 1 8.7351 6.7543 -4.1669 35 1 9.4502 6.3088 -2.5987 36 1 10.6040 4.5858 -2.3401 37 1 11.6751 2.3745 0.1393 38 1 13.4272 1.5015 -1.2293 39 1 12.6730 4.5562 -2.6161 40 1 11.7867 5.3062 -0.4782 41 1 9.8596 0.6666 -0.8332 42 1 7.1761 -1.4068 -1.0079 43 1 8.8266 -1.0100 -1.5439 44 1 8.1868 -0.3087 -0.0383 45 1 4.5098 3.0292 0.9631 46 1 3.4175 3.4406 -0.4294 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79635_13206342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:27:08 Heat of formation + Delta-G solvation = -211.818850 kcal Electronic energy + Delta-G solvation = -36734.963814 eV Core-core repulsion = 31687.845094 eV Total energy + Delta-G solvation = -5047.118721 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.109 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.71167 -41.82476 -40.41540 -40.23515 -39.49012 -38.77339 -38.05274 -37.27595 -37.06422 -36.93881 -32.43920 -31.10725 -29.85411 -29.15653 -28.46615 -27.69154 -27.15294 -26.80033 -23.66226 -23.48038 -23.12413 -21.77142 -20.81200 -19.77186 -19.54014 -19.03480 -18.74982 -18.52842 -18.46125 -18.10156 -17.92005 -17.43059 -17.12304 -16.90725 -16.75925 -16.65055 -16.45783 -16.13780 -15.76564 -15.64691 -15.21506 -14.70807 -14.53230 -14.40781 -14.36771 -14.05741 -13.93291 -13.83000 -13.69026 -13.40923 -13.33480 -13.26127 -13.05648 -13.02480 -12.99909 -12.95273 -12.74488 -12.67576 -12.62313 -12.39877 -12.13239 -11.92321 -11.85594 -11.77109 -11.55759 -11.15671 -10.58498 -9.78483 -9.51829 -5.16432 -0.95330 -0.20622 -0.00950 1.03212 1.06421 1.17981 1.43992 1.46798 1.68865 1.76854 2.06442 2.27730 2.63925 2.74837 2.95224 2.96328 3.15078 3.20486 3.43088 3.51616 3.55450 3.60316 3.64583 3.83430 3.88493 3.90434 3.97366 4.02484 4.10338 4.13131 4.15296 4.18669 4.27010 4.33305 4.35379 4.40669 4.44535 4.51296 4.53860 4.60526 4.61741 4.63662 4.79946 4.90273 4.92757 5.00161 5.37923 5.82453 6.01107 6.37464 6.72222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.499 6.499 5 C -0.095 4.095 6 H 0.136 0.864 7 C -0.086 4.086 8 C -0.644 4.644 9 H 0.158 0.842 10 S 2.592 3.408 11 O -0.921 6.921 12 O -0.941 6.941 13 O -0.634 6.634 14 C -0.005 4.005 15 C 0.210 3.790 16 O -0.288 6.288 17 C 0.021 3.979 18 C -0.240 4.240 19 C 0.027 3.973 20 C -0.078 4.078 21 O -0.541 6.541 22 Si 0.683 3.317 23 C -0.207 4.207 24 C 0.173 3.827 25 O -0.302 6.302 26 C 0.018 3.982 27 C -0.088 4.088 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.387 0.613 39 H -0.247 1.247 40 H -0.249 1.249 41 H 0.153 0.847 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 -4.888 5.932 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.386 6.386 5 C -0.115 4.115 6 H 0.153 0.847 7 C -0.124 4.124 8 C -0.750 4.750 9 H 0.176 0.824 10 S 2.687 3.313 11 O -0.919 6.919 12 O -0.940 6.940 13 O -0.592 6.592 14 C -0.049 4.049 15 C 0.159 3.841 16 O -0.199 6.199 17 C -0.074 4.074 18 C -0.259 4.259 19 C 0.025 3.975 20 C -0.188 4.188 21 O -0.348 6.348 22 Si 0.583 3.417 23 C -0.225 4.225 24 C 0.124 3.876 25 O -0.214 6.214 26 C -0.076 4.076 27 C -0.126 4.126 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.103 0.897 38 H 0.235 0.765 39 H -0.171 1.171 40 H -0.173 1.173 41 H 0.170 0.830 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.121 0.879 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.931 -3.337 4.505 8.914 hybrid contribution -0.410 -0.800 0.661 1.115 sum 6.521 -4.137 5.165 9.291 Atomic orbital electron populations 1.23349 0.75797 1.04061 1.02872 1.86501 1.23845 1.33084 1.83809 1.23504 0.91551 0.81618 0.72389 1.90705 1.66853 1.36402 1.44637 1.22432 0.87667 1.00103 1.01327 0.84668 1.22571 0.95145 0.98828 0.95821 1.32191 1.07792 1.16297 1.18724 0.82396 1.05763 0.74702 0.75337 0.75514 1.93649 1.51052 1.84810 1.62412 1.93636 1.70833 1.48233 1.81266 1.85747 1.26790 1.84973 1.61738 1.16214 0.83781 0.94998 1.09887 1.18468 0.90553 0.86021 0.89008 1.86195 1.42593 1.23727 1.67394 1.23324 0.93382 0.87910 1.02764 1.20834 0.96342 1.01480 1.07240 1.19059 0.93852 0.92071 0.92473 1.24733 0.91432 1.04113 0.98556 1.86487 1.28360 1.56394 1.63580 0.95166 0.89056 0.74872 0.82580 1.20889 0.92291 1.01454 1.07915 1.18600 0.90022 0.86151 0.92843 1.86171 1.40157 1.24049 1.71055 1.23341 1.02145 0.86574 0.95568 1.22634 0.94220 0.95861 0.99925 0.91683 0.91579 0.87775 0.87441 0.87556 0.92050 0.86768 0.91814 0.84144 0.89712 0.76465 1.17124 1.17301 0.82964 0.87003 0.91407 0.91723 0.87913 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.55 101.05 1.07 1.06 16 2 O -0.36 -0.64 10.57 -39.27 -0.41 -1.05 16 3 C 0.47 1.26 7.49 36.00 0.27 1.53 16 4 O -0.50 -2.89 15.65 -18.75 -0.29 -3.18 16 5 C -0.10 0.02 4.25 -90.96 -0.39 -0.37 16 6 H 0.14 -0.43 8.14 -51.92 -0.42 -0.85 16 7 C -0.09 -0.01 7.19 -25.92 -0.19 -0.20 16 8 C -0.64 -0.49 3.50 -25.90 -0.09 -0.58 16 9 H 0.16 -0.25 6.14 -51.93 -0.32 -0.57 16 10 S 2.59 13.48 5.12 -107.50 -0.55 12.93 16 11 O -0.92 -7.58 17.32 -67.04 -1.16 -8.74 16 12 O -0.94 -6.41 15.05 -69.89 -1.05 -7.46 16 13 O -0.63 -3.50 9.62 -56.03 -0.54 -4.04 16 14 C 0.00 -0.02 4.91 -39.03 -0.19 -0.21 16 15 C 0.21 0.97 5.81 -39.15 -0.23 0.74 16 16 O -0.29 -1.50 9.06 -46.69 -0.42 -1.92 16 17 C 0.02 0.02 9.81 101.05 0.99 1.01 16 18 C -0.24 -0.59 7.66 -39.42 -0.30 -0.89 16 19 C 0.03 0.02 5.38 -104.63 -0.56 -0.54 16 20 C -0.08 0.17 2.79 36.00 0.10 0.27 16 21 O -0.54 1.16 12.81 -35.23 -0.45 0.71 16 22 Si 0.68 -1.81 29.84 -169.99 -5.07 -6.88 16 23 C -0.21 -0.03 8.67 -39.43 -0.34 -0.37 16 24 C 0.17 0.28 5.89 -39.15 -0.23 0.05 16 25 O -0.30 0.12 8.36 -34.32 -0.29 -0.17 16 26 C 0.02 -0.08 9.81 101.05 0.99 0.92 16 27 C -0.09 -0.05 7.00 -25.90 -0.18 -0.23 16 28 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 29 H 0.07 0.02 8.13 -51.93 -0.42 -0.40 16 30 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 31 H 0.11 0.16 7.42 -51.92 -0.39 -0.23 16 32 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 33 H 0.06 -0.04 7.67 -51.93 -0.40 -0.43 16 34 H 0.11 -0.11 8.14 -51.93 -0.42 -0.53 16 35 H 0.06 0.00 7.65 -51.93 -0.40 -0.40 16 36 H 0.14 0.16 3.09 -52.49 -0.16 0.00 16 37 H 0.09 -0.37 7.96 -51.93 -0.41 -0.79 16 38 H 0.39 -2.76 8.74 45.56 0.40 -2.37 16 39 H -0.25 -0.05 7.05 56.52 0.40 0.34 16 40 H -0.25 0.06 7.11 56.52 0.40 0.46 16 41 H 0.15 -0.39 6.29 -52.49 -0.33 -0.72 16 42 H 0.11 -0.66 8.14 -51.93 -0.42 -1.09 16 43 H 0.07 -0.30 7.66 -51.93 -0.40 -0.70 16 44 H 0.06 -0.37 7.66 -51.93 -0.40 -0.76 16 45 H 0.10 -0.16 8.14 -51.93 -0.42 -0.59 16 46 H 0.11 0.22 7.40 -51.93 -0.38 -0.16 16 LS Contribution 391.08 15.07 5.89 5.89 Total: 0.00 -13.87 391.08 -9.40 -23.28 By element: Atomic # 1 Polarization: -5.78 SS G_CDS: -5.77 Total: -11.54 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.72 Total: 2.18 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -4.62 Total: -25.86 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: -5.07 Total: -6.88 kcal Atomic # 16 Polarization: 13.48 SS G_CDS: -0.55 Total: 12.93 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -13.87 -9.40 -23.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79635_13206342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.542 kcal (2) G-P(sol) polarization free energy of solvation -13.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds