Wall clock time and date at job start Mon Mar 8 2021 13:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34234 * 117.00077 * 2 1 4 4 O 1.20825 * 119.99640 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00486 * 180.02562 * 3 2 1 6 6 H 1.09010 * 112.84861 * 311.20008 * 5 3 2 7 7 C 1.53780 * 113.69503 * 82.46270 * 5 3 2 8 8 C 1.53776 * 87.08406 * 139.99531 * 7 5 3 9 9 H 1.09002 * 113.69060 * 89.12580 * 8 7 5 10 10 S 1.81402 * 113.61648 * 220.02530 * 8 7 5 11 11 O 1.42101 * 110.54302 * 30.98269 * 10 8 7 12 12 O 1.42097 * 110.54173 * 167.73384 * 10 8 7 13 13 O 1.52199 * 104.44773 * 279.35752 * 10 8 7 14 14 C 1.36093 * 113.99960 * 284.77500 * 13 10 8 15 15 C 1.38982 * 120.08562 * 276.28462 * 14 13 10 16 16 O 1.35993 * 120.04659 * 0.03514 * 15 14 13 17 17 C 1.42900 * 117.00470 * 179.97438 * 16 15 14 18 18 C 1.38669 * 119.90910 * 179.76842 * 15 14 13 19 19 C 1.38233 * 120.08791 * 0.51680 * 18 15 14 20 20 C 1.50696 * 119.90779 * 179.76751 * 19 18 15 21 21 O 1.42905 * 109.47098 * 244.97483 * 20 19 18 22 22 Si 1.86303 * 109.47425 * 4.97566 * 20 19 18 23 23 C 1.38226 * 120.17932 * 359.74048 * 19 18 15 24 24 C 1.38666 * 120.08841 * 0.02562 * 23 19 18 25 25 O 1.35999 * 120.04341 * 180.02562 * 24 23 19 26 26 C 1.42901 * 117.00191 * 359.97438 * 25 24 23 27 27 C 1.53781 * 113.61882 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.47190 * 299.99273 * 1 2 3 29 29 H 1.09003 * 109.47891 * 59.99684 * 1 2 3 30 30 H 1.09003 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09008 * 113.60885 * 25.44890 * 7 5 3 32 32 H 1.09003 * 113.61653 * 254.54628 * 7 5 3 33 33 H 1.09006 * 109.46613 * 59.99621 * 17 16 15 34 34 H 1.08996 * 109.47606 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.47110 * 299.99880 * 17 16 15 36 36 H 1.07995 * 119.95581 * 180.28240 * 18 15 14 37 37 H 1.08998 * 109.47303 * 124.98023 * 20 19 18 38 38 H 0.96699 * 114.00193 * 180.02562 * 21 20 19 39 39 H 1.48500 * 109.99747 * 299.99902 * 22 20 19 40 40 H 1.48489 * 110.00018 * 61.32037 * 22 20 19 41 41 H 1.07996 * 119.95709 * 180.02562 * 23 19 18 42 42 H 1.08992 * 109.47448 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.47103 * 300.00340 * 26 25 24 44 44 H 1.09001 * 109.46692 * 59.99732 * 26 25 24 45 45 H 1.08998 * 113.61903 * 105.38355 * 27 5 3 46 46 H 1.09004 * 113.60974 * 334.48019 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1925 1.1232 -1.3969 8 6 5.1819 2.2266 -0.9868 9 1 6.0818 1.8495 -0.5009 10 16 5.5411 3.4104 -2.3137 11 8 4.4150 3.5591 -3.1675 12 8 6.2248 4.5445 -1.7985 13 8 6.5779 2.7081 -3.1787 14 6 7.8252 2.6802 -2.6350 15 6 8.6757 3.7689 -2.7864 16 8 8.2627 4.8647 -3.4778 17 6 9.1892 5.9465 -3.5930 18 6 9.9441 3.7384 -2.2268 19 6 10.3668 2.6230 -1.5283 20 6 11.7480 2.5922 -0.9263 21 8 12.5246 1.5784 -1.5675 22 14 12.5676 4.2478 -1.1673 23 6 9.5259 1.5361 -1.3800 24 6 8.2542 1.5605 -1.9324 25 8 7.4274 0.4907 -1.7855 26 6 7.9343 -0.6250 -1.0504 27 6 4.1076 2.7143 0.0001 28 1 -0.3634 0.5137 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5255 1.4144 -2.2085 32 1 4.6630 0.1538 -1.5614 33 1 10.0893 5.6012 -4.1018 34 1 8.7351 6.7543 -4.1669 35 1 9.4502 6.3088 -2.5987 36 1 10.6040 4.5858 -2.3401 37 1 11.6751 2.3745 0.1393 38 1 13.4272 1.5015 -1.2293 39 1 12.6730 4.5562 -2.6161 40 1 11.7867 5.3062 -0.4782 41 1 9.8596 0.6666 -0.8332 42 1 7.1761 -1.4068 -1.0079 43 1 8.8266 -1.0100 -1.5439 44 1 8.1868 -0.3087 -0.0383 45 1 4.5098 3.0292 0.9631 46 1 3.4175 3.4406 -0.4294 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79635_13206342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:27:06 Heat of formation + Delta-G solvation = -218.203412 kcal Electronic energy + Delta-G solvation = -36735.240669 eV Core-core repulsion = 31687.845094 eV Total energy + Delta-G solvation = -5047.395576 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.109 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.83804 -41.97190 -40.44050 -40.41633 -39.57628 -38.69117 -38.47996 -37.48891 -37.38828 -36.93298 -32.46047 -31.15262 -29.93169 -29.06249 -28.33241 -27.73662 -27.17394 -26.77408 -23.75192 -23.58049 -23.18008 -21.94996 -20.88344 -19.98281 -19.68178 -19.16456 -18.81240 -18.67651 -18.38872 -18.17094 -17.99442 -17.55676 -17.14546 -17.03466 -16.83618 -16.71017 -16.49022 -16.07808 -15.94268 -15.60352 -15.24075 -14.79631 -14.53128 -14.47695 -14.32744 -14.18466 -14.00639 -13.85875 -13.79504 -13.57129 -13.56246 -13.39195 -13.37622 -13.15174 -13.05958 -12.97850 -12.79543 -12.62282 -12.56194 -12.36086 -12.06998 -11.92138 -11.88779 -11.78816 -11.66969 -11.35271 -10.36233 -9.87538 -9.58171 -4.97856 -1.20361 -0.33877 -0.09113 0.81997 0.99219 1.23644 1.46266 1.62586 1.63459 1.94595 2.00616 2.26122 2.44739 2.58804 2.82547 2.96828 3.07440 3.17024 3.37687 3.51158 3.55873 3.57014 3.72603 3.84935 3.86283 4.02698 4.05175 4.19500 4.22551 4.24478 4.26434 4.29611 4.38002 4.40509 4.43467 4.45085 4.52580 4.56862 4.58084 4.64316 4.66981 4.69870 4.82183 4.90419 4.95273 5.03301 5.26561 5.84293 5.97326 6.56796 6.90746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.464 3.536 4 O -0.540 6.540 5 C -0.083 4.083 6 H 0.180 0.820 7 C -0.090 4.090 8 C -0.613 4.613 9 H 0.191 0.809 10 S 2.577 3.423 11 O -0.971 6.971 12 O -0.970 6.970 13 O -0.646 6.646 14 C -0.040 4.040 15 C 0.183 3.817 16 O -0.320 6.320 17 C 0.011 3.989 18 C -0.256 4.256 19 C 0.020 3.980 20 C -0.075 4.075 21 O -0.556 6.556 22 Si 0.758 3.242 23 C -0.198 4.198 24 C 0.181 3.819 25 O -0.308 6.308 26 C 0.002 3.998 27 C -0.101 4.101 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.142 0.858 37 H 0.121 0.879 38 H 0.409 0.591 39 H -0.294 1.294 40 H -0.286 1.286 41 H 0.187 0.813 42 H 0.134 0.866 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.131 0.869 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 -8.200 8.594 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.430 6.430 5 C -0.102 4.102 6 H 0.197 0.803 7 C -0.128 4.128 8 C -0.723 4.723 9 H 0.208 0.792 10 S 2.678 3.322 11 O -0.969 6.969 12 O -0.968 6.968 13 O -0.604 6.604 14 C -0.084 4.084 15 C 0.133 3.867 16 O -0.232 6.232 17 C -0.082 4.082 18 C -0.274 4.274 19 C 0.018 3.982 20 C -0.185 4.185 21 O -0.367 6.367 22 Si 0.664 3.336 23 C -0.216 4.216 24 C 0.131 3.869 25 O -0.221 6.221 26 C -0.091 4.091 27 C -0.139 4.139 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.087 0.913 36 H 0.160 0.840 37 H 0.138 0.862 38 H 0.262 0.738 39 H -0.222 1.222 40 H -0.213 1.213 41 H 0.205 0.795 42 H 0.152 0.848 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.149 0.851 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.783 -6.650 7.148 13.132 hybrid contribution -0.958 0.161 -0.163 0.985 sum 7.825 -6.489 6.984 12.334 Atomic orbital electron populations 1.23566 0.75016 1.05817 1.02413 1.86501 1.24725 1.32528 1.83356 1.24125 0.92716 0.81246 0.71125 1.90695 1.67967 1.37706 1.46597 1.22594 0.85730 0.99883 1.01993 0.80275 1.22699 0.94679 0.99855 0.95596 1.31975 1.09260 1.14725 1.16390 0.79182 1.05976 0.73847 0.76198 0.76223 1.93575 1.52615 1.86052 1.64694 1.93584 1.71056 1.50566 1.81630 1.85702 1.27548 1.84723 1.62457 1.16725 0.83369 0.96499 1.11810 1.18845 0.91684 0.86175 0.89966 1.86139 1.44258 1.24789 1.68056 1.23556 0.93593 0.87612 1.03486 1.21005 0.95811 1.02632 1.07991 1.19538 0.95592 0.91527 0.91512 1.24720 0.89635 1.04062 1.00132 1.86437 1.30104 1.55902 1.64223 0.94498 0.87124 0.73392 0.78591 1.21268 0.91212 1.02036 1.07098 1.18640 0.90613 0.85833 0.91782 1.86182 1.40264 1.24221 1.71428 1.23775 1.03272 0.85710 0.96343 1.22797 0.93838 0.96404 1.00880 0.91831 0.92460 0.84909 0.89582 0.84310 0.90969 0.85488 0.91344 0.84044 0.86162 0.73820 1.22154 1.21268 0.79543 0.84838 0.90971 0.89379 0.85107 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.55 113.37 1.20 1.19 16 2 O -0.36 -0.99 10.57 -51.45 -0.54 -1.53 16 3 C 0.46 2.44 7.49 71.23 0.53 2.97 16 4 O -0.54 -7.03 15.65 21.97 0.34 -6.69 16 5 C -0.08 0.18 4.25 -11.02 -0.05 0.13 16 6 H 0.18 -1.94 8.14 -2.38 -0.02 -1.96 16 7 C -0.09 0.05 7.19 31.12 0.22 0.28 16 8 C -0.61 -0.70 3.50 31.13 0.11 -0.59 16 9 H 0.19 -1.04 6.14 -2.39 -0.01 -1.06 16 10 S 2.58 33.87 5.12 -56.49 -0.29 33.58 16 11 O -0.97 -20.14 17.32 -118.57 -2.05 -22.19 16 12 O -0.97 -16.49 15.05 -115.84 -1.74 -18.24 16 13 O -0.65 -8.82 9.62 -60.20 -0.58 -9.40 16 14 C -0.04 -0.42 4.91 22.63 0.11 -0.31 16 15 C 0.18 2.13 5.81 22.55 0.13 2.26 16 16 O -0.32 -4.49 9.06 -67.68 -0.61 -5.10 16 17 C 0.01 0.06 9.81 113.37 1.11 1.17 16 18 C -0.26 -1.59 7.66 22.37 0.17 -1.42 16 19 C 0.02 0.02 5.38 -19.87 -0.11 -0.09 16 20 C -0.07 0.49 2.79 71.23 0.20 0.68 16 21 O -0.56 3.89 12.81 -148.98 -1.91 1.98 16 22 Si 0.76 -4.11 29.84 68.60 2.05 -2.06 16 23 C -0.20 0.38 8.67 22.37 0.19 0.57 16 24 C 0.18 0.41 5.89 22.55 0.13 0.54 16 25 O -0.31 0.94 8.36 -79.60 -0.67 0.28 16 26 C 0.00 -0.03 9.81 113.37 1.11 1.09 16 27 C -0.10 -0.09 7.00 31.13 0.22 0.12 16 28 H 0.06 0.01 8.13 -2.38 -0.02 -0.01 16 29 H 0.06 0.09 8.13 -2.39 -0.02 0.07 16 30 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 31 H 0.09 0.38 7.42 -2.38 -0.02 0.36 16 32 H 0.14 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.07 0.12 7.67 -2.38 -0.02 0.11 16 34 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.07 0.21 7.65 -2.39 -0.02 0.19 16 36 H 0.14 0.62 3.09 -2.91 -0.01 0.61 16 37 H 0.12 -1.56 7.96 -2.39 -0.02 -1.58 16 38 H 0.41 -7.12 8.74 -74.06 -0.65 -7.76 16 39 H -0.29 -0.65 7.05 99.48 0.70 0.05 16 40 H -0.29 -0.16 7.11 99.48 0.71 0.55 16 41 H 0.19 -1.76 6.29 -2.91 -0.02 -1.78 16 42 H 0.13 -2.18 8.14 -2.39 -0.02 -2.20 16 43 H 0.07 -0.90 7.66 -2.39 -0.02 -0.92 16 44 H 0.09 -1.44 7.66 -2.39 -0.02 -1.46 16 45 H 0.13 -0.63 8.14 -2.39 -0.02 -0.65 16 46 H 0.08 0.54 7.40 -2.39 -0.02 0.52 16 Total: 0.00 -39.24 391.08 -0.28 -39.52 By element: Atomic # 1 Polarization: -19.16 SS G_CDS: 0.44 Total: -18.73 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 5.29 Total: 8.59 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -7.76 Total: -60.90 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.05 Total: -2.06 kcal Atomic # 16 Polarization: 33.87 SS G_CDS: -0.29 Total: 33.58 kcal Total: -39.24 -0.28 -39.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79635_13206342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.686 kcal (2) G-P(sol) polarization free energy of solvation -39.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds