Wall clock time and date at job start Mon Mar 8 2021 14:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36001 * 117.00219 * 2 1 4 4 C 1.38661 * 120.04093 * 0.02562 * 3 2 1 5 5 C 1.38233 * 120.08662 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.91134 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.46964 * 300.00010 * 6 5 4 8 8 Si 1.86301 * 109.47146 * 179.97438 * 6 5 4 9 9 H 1.48506 * 109.47113 * 59.99890 * 8 6 5 10 10 H 1.48503 * 109.46998 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47376 * 300.00116 * 8 6 5 12 12 C 1.38231 * 120.17825 * 0.24771 * 5 4 3 13 13 C 1.38667 * 120.08811 * 359.45804 * 12 5 4 14 14 O 1.36001 * 120.04200 * 180.27648 * 13 12 5 15 15 C 1.42897 * 117.00249 * 0.28614 * 14 13 12 16 16 C 1.38976 * 120.04343 * 180.02562 * 3 2 1 17 17 O 1.36094 * 120.09153 * 0.02562 * 16 3 2 18 18 S 1.52201 * 113.99889 * 89.99979 * 17 16 3 19 19 O 1.42098 * 104.27755 * 191.07253 * 18 17 16 20 20 O 1.42107 * 104.27520 * 318.92511 * 18 17 16 21 21 C 1.81399 * 104.45133 * 74.99863 * 18 17 16 22 22 C 1.53004 * 109.46745 * 179.97438 * 21 18 17 23 23 C 1.53001 * 109.46682 * 180.02562 * 22 21 18 24 24 Si 1.86303 * 109.47015 * 180.02562 * 23 22 21 25 25 C 1.86301 * 109.46910 * 59.99942 * 24 23 22 26 26 C 1.86300 * 109.47097 * 180.02562 * 24 23 22 27 27 C 1.86300 * 109.47160 * 300.00038 * 24 23 22 28 28 H 1.08998 * 109.47100 * 300.00097 * 1 2 3 29 29 H 1.08999 * 109.47011 * 60.00191 * 1 2 3 30 30 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.96021 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46959 * 59.99981 * 6 5 4 33 33 H 0.96698 * 113.99898 * 299.99550 * 7 6 5 34 34 H 1.08001 * 119.95742 * 179.72451 * 12 5 4 35 35 H 1.08998 * 109.46860 * 300.00126 * 15 14 13 36 36 H 1.08997 * 109.47220 * 60.00334 * 15 14 13 37 37 H 1.09000 * 109.46743 * 179.97438 * 15 14 13 38 38 H 1.08997 * 109.46849 * 299.99675 * 21 18 17 39 39 H 1.09001 * 109.46843 * 60.00112 * 21 18 17 40 40 H 1.08999 * 109.47442 * 300.00035 * 22 21 18 41 41 H 1.09001 * 109.47277 * 60.00478 * 22 21 18 42 42 H 1.08999 * 109.47128 * 300.00126 * 23 22 21 43 43 H 1.08996 * 109.47262 * 59.99831 * 23 22 21 44 44 H 1.08997 * 109.47144 * 60.00513 * 25 24 23 45 45 H 1.09001 * 109.47119 * 179.97438 * 25 24 23 46 46 H 1.08995 * 109.47289 * 300.00000 * 25 24 23 47 47 H 1.08996 * 109.47261 * 59.99776 * 26 24 23 48 48 H 1.09001 * 109.47087 * 180.02562 * 26 24 23 49 49 H 1.09008 * 109.47077 * 299.99967 * 26 24 23 50 50 H 1.08995 * 109.47098 * 59.99964 * 27 24 23 51 51 H 1.09001 * 109.46962 * 179.97438 * 27 24 23 52 52 H 1.08996 * 109.46859 * 300.00016 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2921 2.3752 0.0005 5 6 1.9188 3.6074 0.0000 6 6 1.0951 4.8693 0.0000 7 8 0.2702 4.8997 -1.1665 8 14 2.2265 6.3494 0.0000 9 1 3.0834 6.3175 -1.2125 10 1 1.4148 7.5930 -0.0006 11 1 3.0834 6.3176 1.2125 12 6 3.2989 3.6851 -0.0062 13 6 4.0604 2.5262 -0.0006 14 8 5.4182 2.6038 -0.0011 15 6 5.9933 3.9119 -0.0012 16 6 3.4343 1.2855 -0.0005 17 8 4.1781 0.1458 -0.0016 18 16 4.5159 -0.3717 -1.3925 19 8 5.0473 -1.6696 -1.1641 20 8 3.3173 -0.1909 -2.1343 21 6 5.8101 0.7498 -1.9908 22 6 6.2397 0.3283 -3.3975 23 6 7.3317 1.2738 -3.9019 24 14 7.8544 0.7612 -5.6151 25 6 6.3876 0.8389 -6.7611 26 6 9.1846 1.9120 -6.2289 27 6 8.5140 -0.9805 -5.5680 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2136 2.3188 0.0014 32 1 0.4665 4.8929 0.8902 33 1 0.7638 4.8812 -1.9978 34 1 3.7847 4.6496 -0.0111 35 1 5.6689 4.4514 -0.8909 36 1 5.6696 4.4512 0.8890 37 1 7.0803 3.8309 -0.0011 38 1 5.4237 1.7686 -2.0185 39 1 6.6683 0.7047 -1.3204 40 1 6.6262 -0.6905 -3.3695 41 1 5.3816 0.3731 -4.0682 42 1 6.9457 2.2928 -3.9299 43 1 8.1897 1.2287 -3.2312 44 1 6.0017 1.8579 -6.7887 45 1 6.6934 0.5395 -7.7635 46 1 5.6096 0.1654 -6.4017 47 1 10.0426 1.8661 -5.5583 48 1 9.4901 1.6123 -7.2315 49 1 8.7991 2.9312 -6.2564 50 1 7.7360 -1.6541 -5.2087 51 1 8.8193 -1.2806 -6.5704 52 1 9.3721 -1.0260 -4.8975 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79635_14927650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:54:54 Heat of formation + Delta-G solvation = -224.861996 kcal Electronic energy + Delta-G solvation = -35034.676466 eV Core-core repulsion = 30445.064476 eV Total energy + Delta-G solvation = -4589.611990 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 392.142 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.70292 -40.40762 -40.22149 -38.88402 -37.98727 -36.96004 -36.86450 -35.84222 -32.31832 -31.09290 -29.72764 -29.16543 -28.49522 -28.44077 -28.42749 -28.23133 -26.83379 -23.65292 -23.47142 -22.87077 -21.61128 -19.89915 -19.22954 -18.98702 -18.57866 -18.21384 -17.64549 -17.45525 -17.09772 -16.85481 -16.69080 -16.35078 -16.29230 -16.16633 -15.61601 -15.29993 -15.08843 -14.76062 -14.37618 -14.27113 -14.13901 -14.11008 -13.99268 -13.85864 -13.63023 -13.55543 -13.29209 -13.26877 -13.21539 -13.16008 -13.11297 -13.03022 -13.00985 -12.96506 -12.88087 -12.70168 -12.69169 -12.42678 -12.24039 -11.96287 -11.93099 -11.88222 -11.67557 -10.85432 -10.81660 -10.70350 -10.52367 -9.74945 -9.51320 -0.87870 -0.14686 -0.02448 0.88356 1.18156 1.20402 1.28161 1.45458 1.69497 1.72600 1.83068 1.84273 2.11577 2.31383 2.58132 2.80736 3.05603 3.15980 3.25849 3.42771 3.56956 3.66205 3.73486 3.78288 3.85419 3.88820 3.91285 4.09324 4.10081 4.20024 4.27702 4.29996 4.32338 4.48062 4.55934 4.61953 4.63105 4.68204 4.69419 4.73673 4.74680 4.75565 4.77300 4.79377 4.85795 4.96283 4.97076 5.01730 5.27387 5.44012 5.52902 5.56067 5.79796 6.07181 6.31656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.293 6.293 3 C 0.203 3.797 4 C -0.203 4.203 5 C -0.021 4.021 6 C -0.086 4.086 7 O -0.532 6.532 8 Si 0.943 3.057 9 H -0.247 1.247 10 H -0.246 1.246 11 H -0.247 1.247 12 C -0.242 4.242 13 C 0.168 3.832 14 O -0.304 6.304 15 C 0.016 3.984 16 C 0.001 3.999 17 O -0.640 6.640 18 S 2.579 3.421 19 O -0.929 6.929 20 O -0.947 6.947 21 C -0.638 4.638 22 C -0.102 4.102 23 C -0.403 4.403 24 Si 1.000 3.000 25 C -0.453 4.453 26 C -0.448 4.448 27 C -0.453 4.453 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.154 0.846 32 H 0.128 0.872 33 H 0.380 0.620 34 H 0.142 0.858 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.069 0.931 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 7.132 -0.455 7.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.204 6.204 3 C 0.153 3.847 4 C -0.222 4.222 5 C -0.023 4.023 6 C -0.196 4.196 7 O -0.337 6.337 8 Si 0.765 3.235 9 H -0.171 1.171 10 H -0.170 1.170 11 H -0.170 1.170 12 C -0.261 4.261 13 C 0.119 3.881 14 O -0.217 6.217 15 C -0.078 4.078 16 C -0.043 4.043 17 O -0.598 6.598 18 S 2.675 3.325 19 O -0.928 6.928 20 O -0.946 6.946 21 C -0.765 4.765 22 C -0.140 4.140 23 C -0.488 4.488 24 Si 1.197 2.803 25 C -0.560 4.560 26 C -0.556 4.556 27 C -0.561 4.561 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.171 0.829 32 H 0.146 0.854 33 H 0.227 0.773 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.188 6.846 0.224 6.852 hybrid contribution 0.562 0.270 -0.342 0.711 sum 0.750 7.116 -0.118 7.156 Atomic orbital electron populations 1.23318 0.76533 1.05254 1.02174 1.86194 1.22841 1.24952 1.86418 1.18648 0.89413 0.86135 0.90473 1.20995 1.01324 0.89844 1.10064 1.20097 0.92702 0.95948 0.93509 1.25106 1.00764 1.00941 0.92793 1.86547 1.35154 1.96788 1.15212 0.85762 0.78294 0.77475 0.81963 1.17092 1.16980 1.17027 1.20889 0.94051 0.97190 1.13933 1.18513 0.83602 0.91515 0.94432 1.86194 1.15695 1.32206 1.87593 1.23352 1.00105 0.82026 1.02331 1.16233 0.86324 0.80244 1.21475 1.85755 1.71673 1.45213 1.57156 1.06078 0.76482 0.76232 0.73715 1.93634 1.81352 1.35186 1.82593 1.93630 1.42484 1.86398 1.72066 1.30889 1.19797 1.17437 1.08389 1.20982 1.00356 1.00750 0.91944 1.26141 1.01882 1.02989 1.17834 0.79363 0.67256 0.67382 0.66338 1.26167 1.14582 1.04541 1.10710 1.26099 1.12680 1.10528 1.06270 1.26172 1.06663 1.18670 1.04574 0.91802 0.91425 0.87204 0.82853 0.85407 0.77257 0.84050 0.91737 0.91562 0.86825 0.84880 0.84176 0.90094 0.90169 0.90277 0.90046 0.91234 0.91143 0.91071 0.91262 0.91172 0.91329 0.91062 0.91154 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.29 -1.13 9.72 -41.61 -0.40 -1.54 16 3 C 0.20 0.65 5.93 -39.15 -0.23 0.42 16 4 C -0.20 -0.08 8.60 -39.43 -0.34 -0.42 16 5 C -0.02 0.02 5.39 -104.63 -0.56 -0.55 16 6 C -0.09 0.21 2.82 36.01 0.10 0.31 16 7 O -0.53 0.96 12.77 -35.23 -0.45 0.51 16 8 Si 0.94 -2.57 25.06 -169.99 -4.26 -6.83 16 9 H -0.25 0.75 7.11 56.52 0.40 1.15 16 10 H -0.25 0.29 7.11 56.52 0.40 0.69 16 11 H -0.25 0.63 7.11 56.52 0.40 1.03 16 12 C -0.24 0.17 7.66 -39.43 -0.30 -0.13 16 13 C 0.17 0.20 5.83 -39.15 -0.23 -0.03 16 14 O -0.30 0.07 7.48 -34.32 -0.26 -0.19 16 15 C 0.02 -0.06 9.81 101.05 0.99 0.93 16 16 C 0.00 0.00 4.82 -39.03 -0.19 -0.18 16 17 O -0.64 -3.29 9.62 -56.03 -0.54 -3.83 16 18 S 2.58 12.10 5.17 -107.50 -0.56 11.55 16 19 O -0.93 -7.35 18.09 -67.04 -1.21 -8.56 16 20 O -0.95 -5.81 15.82 -68.54 -1.08 -6.90 16 21 C -0.64 -0.35 4.52 37.16 0.17 -0.18 16 22 C -0.10 0.02 4.59 -26.73 -0.12 -0.10 16 23 C -0.40 0.80 4.45 37.16 0.17 0.96 16 24 Si 1.00 -2.57 12.19 -169.99 -2.07 -4.64 16 25 C -0.45 0.58 8.65 101.05 0.87 1.46 16 26 C -0.45 0.78 8.65 101.05 0.87 1.65 16 27 C -0.45 0.46 8.65 101.05 0.87 1.33 16 28 H 0.06 -0.16 7.66 -51.93 -0.40 -0.56 16 29 H 0.07 -0.11 7.66 -51.93 -0.40 -0.51 16 30 H 0.11 -0.22 8.14 -51.93 -0.42 -0.65 16 31 H 0.15 -0.23 6.29 -52.49 -0.33 -0.56 16 32 H 0.13 -0.46 7.96 -51.93 -0.41 -0.88 16 33 H 0.38 -1.83 8.70 45.56 0.40 -1.44 16 34 H 0.14 -0.41 3.10 -52.49 -0.16 -0.57 16 35 H 0.06 -0.33 7.65 -51.93 -0.40 -0.72 16 36 H 0.07 -0.30 7.67 -51.93 -0.40 -0.70 16 37 H 0.11 -0.62 8.14 -51.93 -0.42 -1.05 16 38 H 0.13 -0.12 6.01 -51.93 -0.31 -0.44 16 39 H 0.14 -0.12 8.10 -51.92 -0.42 -0.54 16 40 H 0.08 -0.05 7.79 -51.93 -0.40 -0.46 16 41 H 0.08 -0.08 7.79 -51.93 -0.40 -0.48 16 42 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 43 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 45 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 46 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 47 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 48 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 49 H 0.07 -0.13 7.96 -51.92 -0.41 -0.54 16 50 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 51 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 52 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 LS Contribution 427.36 15.07 6.44 6.44 Total: 0.00 -10.82 427.36 -9.15 -19.97 By element: Atomic # 1 Polarization: -4.62 SS G_CDS: -7.81 Total: -12.44 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 3.06 Total: 6.45 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -3.95 Total: -20.50 kcal Atomic # 14 Polarization: -5.14 SS G_CDS: -6.33 Total: -11.47 kcal Atomic # 16 Polarization: 12.10 SS G_CDS: -0.56 Total: 11.55 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -10.82 -9.15 -19.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79635_14927650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.891 kcal (2) G-P(sol) polarization free energy of solvation -10.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds