Wall clock time and date at job start Mon Mar 8 2021 14:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36001 * 117.00219 * 2 1 4 4 C 1.38661 * 120.04093 * 0.02562 * 3 2 1 5 5 C 1.38233 * 120.08662 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.91134 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.46964 * 300.00010 * 6 5 4 8 8 Si 1.86301 * 109.47146 * 179.97438 * 6 5 4 9 9 H 1.48506 * 109.47113 * 59.99890 * 8 6 5 10 10 H 1.48503 * 109.46998 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47376 * 300.00116 * 8 6 5 12 12 C 1.38231 * 120.17825 * 0.24771 * 5 4 3 13 13 C 1.38667 * 120.08811 * 359.45804 * 12 5 4 14 14 O 1.36001 * 120.04200 * 180.27648 * 13 12 5 15 15 C 1.42897 * 117.00249 * 0.28614 * 14 13 12 16 16 C 1.38976 * 120.04343 * 180.02562 * 3 2 1 17 17 O 1.36094 * 120.09153 * 0.02562 * 16 3 2 18 18 S 1.52201 * 113.99889 * 89.99979 * 17 16 3 19 19 O 1.42098 * 104.27755 * 191.07253 * 18 17 16 20 20 O 1.42107 * 104.27520 * 318.92511 * 18 17 16 21 21 C 1.81399 * 104.45133 * 74.99863 * 18 17 16 22 22 C 1.53004 * 109.46745 * 179.97438 * 21 18 17 23 23 C 1.53001 * 109.46682 * 180.02562 * 22 21 18 24 24 Si 1.86303 * 109.47015 * 180.02562 * 23 22 21 25 25 C 1.86301 * 109.46910 * 59.99942 * 24 23 22 26 26 C 1.86300 * 109.47097 * 180.02562 * 24 23 22 27 27 C 1.86300 * 109.47160 * 300.00038 * 24 23 22 28 28 H 1.08998 * 109.47100 * 300.00097 * 1 2 3 29 29 H 1.08999 * 109.47011 * 60.00191 * 1 2 3 30 30 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.96021 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46959 * 59.99981 * 6 5 4 33 33 H 0.96698 * 113.99898 * 299.99550 * 7 6 5 34 34 H 1.08001 * 119.95742 * 179.72451 * 12 5 4 35 35 H 1.08998 * 109.46860 * 300.00126 * 15 14 13 36 36 H 1.08997 * 109.47220 * 60.00334 * 15 14 13 37 37 H 1.09000 * 109.46743 * 179.97438 * 15 14 13 38 38 H 1.08997 * 109.46849 * 299.99675 * 21 18 17 39 39 H 1.09001 * 109.46843 * 60.00112 * 21 18 17 40 40 H 1.08999 * 109.47442 * 300.00035 * 22 21 18 41 41 H 1.09001 * 109.47277 * 60.00478 * 22 21 18 42 42 H 1.08999 * 109.47128 * 300.00126 * 23 22 21 43 43 H 1.08996 * 109.47262 * 59.99831 * 23 22 21 44 44 H 1.08997 * 109.47144 * 60.00513 * 25 24 23 45 45 H 1.09001 * 109.47119 * 179.97438 * 25 24 23 46 46 H 1.08995 * 109.47289 * 300.00000 * 25 24 23 47 47 H 1.08996 * 109.47261 * 59.99776 * 26 24 23 48 48 H 1.09001 * 109.47087 * 180.02562 * 26 24 23 49 49 H 1.09008 * 109.47077 * 299.99967 * 26 24 23 50 50 H 1.08995 * 109.47098 * 59.99964 * 27 24 23 51 51 H 1.09001 * 109.46962 * 179.97438 * 27 24 23 52 52 H 1.08996 * 109.46859 * 300.00016 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2921 2.3752 0.0005 5 6 1.9188 3.6074 0.0000 6 6 1.0951 4.8693 0.0000 7 8 0.2702 4.8997 -1.1665 8 14 2.2265 6.3494 0.0000 9 1 3.0834 6.3175 -1.2125 10 1 1.4148 7.5930 -0.0006 11 1 3.0834 6.3176 1.2125 12 6 3.2989 3.6851 -0.0062 13 6 4.0604 2.5262 -0.0006 14 8 5.4182 2.6038 -0.0011 15 6 5.9933 3.9119 -0.0012 16 6 3.4343 1.2855 -0.0005 17 8 4.1781 0.1458 -0.0016 18 16 4.5159 -0.3717 -1.3925 19 8 5.0473 -1.6696 -1.1641 20 8 3.3173 -0.1909 -2.1343 21 6 5.8101 0.7498 -1.9908 22 6 6.2397 0.3283 -3.3975 23 6 7.3317 1.2738 -3.9019 24 14 7.8544 0.7612 -5.6151 25 6 6.3876 0.8389 -6.7611 26 6 9.1846 1.9120 -6.2289 27 6 8.5140 -0.9805 -5.5680 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2136 2.3188 0.0014 32 1 0.4665 4.8929 0.8902 33 1 0.7638 4.8812 -1.9978 34 1 3.7847 4.6496 -0.0111 35 1 5.6689 4.4514 -0.8909 36 1 5.6696 4.4512 0.8890 37 1 7.0803 3.8309 -0.0011 38 1 5.4237 1.7686 -2.0185 39 1 6.6683 0.7047 -1.3204 40 1 6.6262 -0.6905 -3.3695 41 1 5.3816 0.3731 -4.0682 42 1 6.9457 2.2928 -3.9299 43 1 8.1897 1.2287 -3.2312 44 1 6.0017 1.8579 -6.7887 45 1 6.6934 0.5395 -7.7635 46 1 5.6096 0.1654 -6.4017 47 1 10.0426 1.8661 -5.5583 48 1 9.4901 1.6123 -7.2315 49 1 8.7991 2.9312 -6.2564 50 1 7.7360 -1.6541 -5.2087 51 1 8.8193 -1.2806 -6.5704 52 1 9.3721 -1.0260 -4.8975 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79635_14927650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:54:53 Heat of formation + Delta-G solvation = -224.916479 kcal Electronic energy + Delta-G solvation = -35034.678829 eV Core-core repulsion = 30445.064476 eV Total energy + Delta-G solvation = -4589.614352 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 392.142 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.76318 -40.38806 -40.33151 -38.78480 -38.37629 -37.27261 -36.82937 -35.82028 -32.29544 -31.05970 -29.61102 -29.00030 -28.35292 -28.30830 -28.27827 -28.16041 -26.76717 -23.64058 -23.45933 -22.81589 -21.71408 -19.97283 -19.34766 -19.06937 -18.74681 -18.21795 -17.58966 -17.48587 -17.02732 -16.93721 -16.67312 -16.28039 -16.13488 -16.03979 -15.69324 -15.33210 -14.99264 -14.71292 -14.27424 -14.19937 -14.06092 -14.00646 -13.95932 -13.81951 -13.56319 -13.51793 -13.40736 -13.35883 -13.26800 -13.14386 -13.13808 -13.04315 -12.97626 -12.96386 -12.81587 -12.61794 -12.55819 -12.19185 -12.05055 -11.86082 -11.81829 -11.78472 -11.69111 -10.70624 -10.68282 -10.51069 -10.41571 -9.79210 -9.49893 -1.06707 -0.22506 -0.02006 0.97933 1.11794 1.46468 1.51337 1.54127 1.91454 1.93190 2.00851 2.03432 2.11561 2.36907 2.56252 2.74412 2.89783 3.21154 3.42989 3.49140 3.57028 3.70807 3.76633 3.79097 3.91787 4.16668 4.18943 4.26913 4.31951 4.32930 4.38638 4.48668 4.56293 4.65070 4.65922 4.67389 4.72427 4.77593 4.81460 4.81570 4.84318 4.86549 4.88393 4.88715 4.89157 5.01653 5.09814 5.10266 5.46102 5.60269 5.66527 5.67551 5.91703 6.05643 6.67200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.180 3.820 4 C -0.205 4.205 5 C -0.013 4.013 6 C -0.086 4.086 7 O -0.545 6.545 8 Si 0.967 3.033 9 H -0.236 1.236 10 H -0.270 1.270 11 H -0.245 1.245 12 C -0.237 4.237 13 C 0.170 3.830 14 O -0.315 6.315 15 C -0.002 4.002 16 C -0.036 4.036 17 O -0.653 6.653 18 S 2.566 3.434 19 O -0.979 6.979 20 O -0.973 6.973 21 C -0.611 4.611 22 C -0.119 4.119 23 C -0.407 4.407 24 Si 1.067 2.933 25 C -0.472 4.472 26 C -0.459 4.459 27 C -0.477 4.477 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.168 0.832 32 H 0.139 0.861 33 H 0.392 0.608 34 H 0.167 0.833 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 9.970 -0.585 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.131 3.869 4 C -0.224 4.224 5 C -0.015 4.015 6 C -0.196 4.196 7 O -0.352 6.352 8 Si 0.789 3.211 9 H -0.159 1.159 10 H -0.195 1.195 11 H -0.169 1.169 12 C -0.256 4.256 13 C 0.121 3.879 14 O -0.227 6.227 15 C -0.095 4.095 16 C -0.080 4.080 17 O -0.612 6.612 18 S 2.667 3.333 19 O -0.977 6.977 20 O -0.972 6.972 21 C -0.742 4.742 22 C -0.158 4.158 23 C -0.493 4.493 24 Si 1.260 2.740 25 C -0.578 4.578 26 C -0.566 4.566 27 C -0.582 4.582 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.185 0.815 32 H 0.157 0.843 33 H 0.242 0.758 34 H 0.184 0.816 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.954 9.631 0.089 9.678 hybrid contribution 0.318 -0.516 -0.317 0.684 sum 1.272 9.115 -0.228 9.206 Atomic orbital electron populations 1.23576 0.74902 1.06256 1.03457 1.86142 1.24813 1.26087 1.86819 1.18994 0.89753 0.86677 0.91480 1.21189 1.01950 0.89473 1.09807 1.20364 0.93004 0.96142 0.91984 1.25254 1.01015 1.00122 0.93164 1.86524 1.35982 1.96698 1.16036 0.85433 0.77684 0.75595 0.82372 1.15906 1.19533 1.16861 1.21166 0.94033 0.97548 1.12850 1.18564 0.84484 0.90964 0.93890 1.86190 1.14855 1.34464 1.87237 1.23769 1.01177 0.80836 1.03695 1.16775 0.86864 0.80585 1.23787 1.85703 1.72189 1.46322 1.56993 1.06305 0.77070 0.76357 0.73537 1.93559 1.81982 1.38735 1.83420 1.93577 1.44398 1.86725 1.72467 1.30711 1.18019 1.16510 1.08991 1.21233 1.01483 1.01546 0.91496 1.26231 1.01514 1.03367 1.18157 0.78329 0.65459 0.65126 0.65124 1.26407 1.15530 1.04670 1.11187 1.26217 1.13114 1.11079 1.06161 1.26469 1.06740 1.20623 1.04361 0.89963 0.90631 0.86482 0.81459 0.84333 0.75824 0.81644 0.89887 0.90691 0.84920 0.82846 0.82384 0.90136 0.89652 0.88613 0.88908 0.90762 0.91481 0.91657 0.91041 0.91596 0.90809 0.91755 0.91475 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.33 -3.33 9.72 -72.65 -0.71 -4.03 16 3 C 0.18 1.44 5.93 22.55 0.13 1.57 16 4 C -0.21 -0.21 8.60 22.37 0.19 -0.02 16 5 C -0.01 0.03 5.39 -19.87 -0.11 -0.07 16 6 C -0.09 0.54 2.82 71.24 0.20 0.74 16 7 O -0.55 2.62 12.77 -148.98 -1.90 0.72 16 8 Si 0.97 -7.12 25.06 68.60 1.72 -5.40 16 9 H -0.24 2.14 7.11 99.48 0.71 2.85 16 10 H -0.27 0.84 7.11 99.48 0.71 1.55 16 11 H -0.25 1.83 7.11 99.48 0.71 2.53 16 12 C -0.24 0.67 7.66 22.37 0.17 0.84 16 13 C 0.17 0.34 5.83 22.55 0.13 0.47 16 14 O -0.31 0.52 7.48 -79.62 -0.60 -0.08 16 15 C 0.00 0.02 9.81 113.37 1.11 1.13 16 16 C -0.04 -0.32 4.82 22.62 0.11 -0.21 16 17 O -0.65 -8.30 9.62 -60.20 -0.58 -8.88 16 18 S 2.57 29.84 5.17 -56.49 -0.29 29.55 16 19 O -0.98 -18.72 18.09 -118.57 -2.15 -20.87 16 20 O -0.97 -14.55 15.82 -117.13 -1.85 -16.40 16 21 C -0.61 -0.52 4.52 71.98 0.33 -0.20 16 22 C -0.12 0.09 4.59 30.60 0.14 0.23 16 23 C -0.41 2.37 4.45 71.98 0.32 2.69 16 24 Si 1.07 -6.36 12.19 68.60 0.84 -5.53 16 25 C -0.47 1.29 8.65 113.37 0.98 2.27 16 26 C -0.46 2.18 8.65 113.37 0.98 3.16 16 27 C -0.48 0.78 8.65 113.37 0.98 1.76 16 28 H 0.08 -0.36 7.66 -2.39 -0.02 -0.38 16 29 H 0.08 -0.16 7.66 -2.39 -0.02 -0.18 16 30 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.17 -0.50 6.29 -2.91 -0.02 -0.52 16 32 H 0.14 -1.20 7.96 -2.39 -0.02 -1.22 16 33 H 0.39 -4.29 8.70 -74.06 -0.64 -4.93 16 34 H 0.17 -1.40 3.10 -2.91 -0.01 -1.41 16 35 H 0.08 -1.13 7.65 -2.39 -0.02 -1.15 16 36 H 0.07 -0.87 7.67 -2.39 -0.02 -0.89 16 37 H 0.13 -1.84 8.14 -2.39 -0.02 -1.86 16 38 H 0.15 -0.48 6.01 -2.39 -0.01 -0.50 16 39 H 0.16 -0.42 8.10 -2.39 -0.02 -0.44 16 40 H 0.08 -0.06 7.79 -2.39 -0.02 -0.07 16 41 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 42 H 0.10 -0.83 7.96 -2.39 -0.02 -0.84 16 43 H 0.09 -0.70 7.96 -2.39 -0.02 -0.72 16 44 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 45 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 46 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 47 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 48 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 49 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 50 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 51 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 52 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 Total: 0.00 -28.32 427.36 2.31 -26.01 By element: Atomic # 1 Polarization: -11.60 SS G_CDS: 1.04 Total: -10.56 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.79 Total: 15.47 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -7.78 Total: -49.55 kcal Atomic # 14 Polarization: -13.48 SS G_CDS: 2.56 Total: -10.92 kcal Atomic # 16 Polarization: 29.84 SS G_CDS: -0.29 Total: 29.55 kcal Total: -28.32 2.31 -26.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79635_14927650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.909 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds