Wall clock time and date at job start Mon Mar 8 2021 12:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35997 * 117.00141 * 2 1 4 4 C 1.38667 * 120.04293 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.08771 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.90960 * 180.02562 * 5 4 3 7 7 O 1.42906 * 109.46887 * 64.99808 * 6 5 4 8 8 Si 1.86291 * 109.47207 * 184.99916 * 6 5 4 9 9 C 1.38226 * 120.17882 * 0.29490 * 5 4 3 10 10 C 1.38665 * 120.09064 * 359.45367 * 9 5 4 11 11 O 1.35997 * 120.04908 * 180.29472 * 10 9 5 12 12 C 1.42904 * 116.99605 * 0.23467 * 11 10 9 13 13 C 1.38974 * 120.04614 * 179.97438 * 3 2 1 14 14 O 1.36098 * 120.09225 * 359.97438 * 13 3 2 15 15 S 1.52200 * 113.99602 * 89.99774 * 14 13 3 16 16 O 1.42102 * 104.27340 * 191.07323 * 15 14 13 17 17 O 1.42098 * 104.28230 * 318.93497 * 15 14 13 18 18 C 1.81403 * 104.44729 * 75.00665 * 15 14 13 19 19 C 1.52996 * 109.47308 * 179.97438 * 18 15 14 20 20 H 1.09005 * 112.84845 * 43.80247 * 19 18 15 21 21 C 1.53782 * 113.61663 * 175.00025 * 19 18 15 22 22 C 1.53775 * 87.08130 * 89.11573 * 21 19 18 23 23 O 1.42900 * 113.61380 * 270.88462 * 22 21 19 24 24 C 1.42901 * 113.99869 * 294.69326 * 23 22 21 25 25 C 1.53002 * 113.61151 * 140.06412 * 22 21 19 26 26 F 1.39896 * 109.47258 * 54.77591 * 25 22 21 27 27 F 1.39905 * 109.46875 * 174.76903 * 25 22 21 28 28 F 1.39900 * 109.47377 * 294.76893 * 25 22 21 29 29 C 1.53780 * 87.08332 * 25.43359 * 22 21 19 30 30 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47527 * 299.99785 * 1 2 3 32 32 H 1.09000 * 109.47433 * 59.99711 * 1 2 3 33 33 H 1.08002 * 119.95798 * 359.97414 * 4 3 2 34 34 H 1.09003 * 109.47167 * 305.00259 * 6 5 4 35 35 H 0.96688 * 113.99970 * 60.00374 * 7 6 5 36 36 H 1.48496 * 110.00249 * 179.97438 * 8 6 5 37 37 H 1.48504 * 110.00218 * 301.31710 * 8 6 5 38 38 H 1.07998 * 119.94944 * 179.70720 * 9 5 4 39 39 H 1.08999 * 109.47423 * 59.99585 * 12 11 10 40 40 H 1.08998 * 109.47030 * 180.02562 * 12 11 10 41 41 H 1.09005 * 109.46474 * 299.99254 * 12 11 10 42 42 H 1.08995 * 109.46960 * 299.99547 * 18 15 14 43 43 H 1.09004 * 109.47267 * 59.99692 * 18 15 14 44 44 H 1.09000 * 113.61160 * 203.66472 * 21 19 18 45 45 H 1.08998 * 113.60902 * 334.56031 * 21 19 18 46 46 H 1.09000 * 109.47206 * 296.99848 * 24 23 22 47 47 H 1.08996 * 109.46836 * 57.00100 * 24 23 22 48 48 H 1.08998 * 109.46687 * 176.99498 * 24 23 22 49 49 H 1.08997 * 113.61603 * 220.01826 * 29 22 21 50 50 H 1.08998 * 113.61615 * 89.11414 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3753 0.0005 5 6 1.9187 3.6074 0.0011 6 6 1.0950 4.8694 0.0022 7 8 0.3583 4.9562 1.2237 8 14 2.2207 6.3459 -0.1503 9 6 3.2988 3.6851 -0.0051 10 6 4.0604 2.5263 -0.0004 11 8 5.4181 2.6038 -0.0004 12 6 5.9932 3.9120 -0.0001 13 6 3.4342 1.2855 0.0005 14 8 4.1782 0.1459 0.0016 15 16 4.5171 -0.3733 -1.3884 16 8 5.0483 -1.6710 -1.1578 17 8 3.3193 -0.1934 -2.1315 18 6 5.8118 0.7474 -1.9869 19 6 6.2427 0.3244 -3.3927 20 1 5.3994 0.0765 -4.0373 21 6 7.2533 1.2844 -4.0423 22 6 8.3584 0.4366 -3.3907 23 8 8.7143 0.8720 -2.0769 24 6 9.3139 2.1685 -2.0368 25 6 9.5741 0.2159 -4.2932 26 9 10.0664 1.4528 -4.7230 27 9 10.5693 -0.4590 -3.5781 28 9 9.1982 -0.5478 -5.4034 29 6 7.3597 -0.7327 -3.4027 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 0.2135 2.3188 0.0005 34 1 0.4024 4.8520 -0.8393 35 1 0.9118 4.9761 2.0162 36 1 1.4204 7.5968 -0.1510 37 1 3.1906 6.3635 0.9741 38 1 3.7845 4.6497 -0.0094 39 1 5.6690 4.4513 0.8899 40 1 7.0802 3.8310 -0.0006 41 1 5.6691 4.4514 -0.8902 42 1 5.4255 1.7662 -2.0162 43 1 6.6695 0.7032 -1.3156 44 1 7.2565 1.2433 -5.1315 45 1 7.1988 2.3022 -3.6563 46 1 10.2537 2.1514 -2.5886 47 1 8.6394 2.8948 -2.4903 48 1 9.5056 2.4481 -1.0009 49 1 7.3912 -1.3431 -2.5003 50 1 7.3919 -1.3251 -4.3170 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79635_17541816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:54:26 Heat of formation + Delta-G solvation = -319.995392 kcal Electronic energy + Delta-G solvation = -46506.309395 eV Core-core repulsion = 40181.970955 eV Total energy + Delta-G solvation = -6324.338440 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.113 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -51.16137 -48.71026 -48.58916 -42.74725 -41.53558 -40.42887 -40.27105 -38.95985 -38.04257 -37.41206 -37.05111 -36.90948 -32.37459 -31.74792 -31.11867 -29.19577 -28.52052 -28.44454 -27.80867 -26.93912 -26.86371 -23.85509 -23.49700 -23.42307 -21.88022 -20.76915 -20.04423 -19.80062 -19.47407 -19.29968 -19.21635 -18.89621 -18.59195 -18.17730 -17.73427 -17.51500 -17.35975 -17.09175 -16.79677 -16.58846 -16.57006 -16.33074 -16.18111 -15.99632 -15.79937 -15.58767 -15.50177 -15.37841 -15.24060 -15.04528 -14.82053 -14.78892 -14.74706 -14.59938 -14.36160 -14.16626 -14.05570 -13.84058 -13.39451 -13.35005 -13.26496 -13.17636 -13.10053 -13.06578 -12.99339 -12.92569 -12.75100 -12.71328 -12.40783 -12.33118 -12.28417 -12.08033 -11.97584 -11.92861 -11.40964 -10.89665 -10.86932 -9.81148 -9.55369 -5.22311 -0.94276 -0.19942 -0.05948 0.99300 1.12688 1.33207 1.41549 1.55060 1.73476 1.98688 2.06659 2.27503 2.51635 2.61474 2.66866 2.82393 2.98833 3.03234 3.14220 3.17718 3.31623 3.35736 3.42592 3.51359 3.56759 3.62506 3.81207 3.83673 3.88195 3.95210 4.01872 4.05907 4.10829 4.15702 4.17241 4.23883 4.26859 4.29864 4.38474 4.43218 4.46298 4.51151 4.52612 4.58348 4.60045 4.72064 4.78331 4.90211 4.93620 4.98021 5.60694 5.76424 6.02876 6.14403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.293 6.293 3 C 0.203 3.797 4 C -0.205 4.205 5 C -0.018 4.018 6 C -0.081 4.081 7 O -0.523 6.523 8 Si 0.685 3.315 9 C -0.235 4.235 10 C 0.167 3.833 11 O -0.303 6.303 12 C 0.016 3.984 13 C 0.000 4.000 14 O -0.638 6.638 15 S 2.586 3.414 16 O -0.924 6.924 17 O -0.946 6.946 18 C -0.633 4.633 19 C -0.091 4.091 20 H 0.108 0.892 21 C -0.136 4.136 22 C 0.043 3.957 23 O -0.329 6.329 24 C 0.010 3.990 25 C 0.437 3.563 26 F -0.182 7.182 27 F -0.173 7.173 28 F -0.174 7.174 29 C -0.128 4.128 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.379 0.621 36 H -0.250 1.250 37 H -0.256 1.256 38 H 0.149 0.851 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.140 0.860 43 H 0.157 0.843 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.101 0.899 49 H 0.109 0.891 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 7.969 -1.133 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.204 6.204 3 C 0.153 3.847 4 C -0.224 4.224 5 C -0.020 4.020 6 C -0.191 4.191 7 O -0.329 6.329 8 Si 0.586 3.414 9 C -0.253 4.253 10 C 0.119 3.881 11 O -0.215 6.215 12 C -0.079 4.079 13 C -0.043 4.043 14 O -0.596 6.596 15 S 2.681 3.319 16 O -0.922 6.922 17 O -0.945 6.945 18 C -0.759 4.759 19 C -0.111 4.111 20 H 0.126 0.874 21 C -0.174 4.174 22 C 0.000 4.000 23 O -0.247 6.247 24 C -0.086 4.086 25 C 0.382 3.618 26 F -0.163 7.163 27 F -0.154 7.154 28 F -0.155 7.155 29 C -0.164 4.164 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.227 0.773 36 H -0.175 1.175 37 H -0.181 1.181 38 H 0.166 0.834 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.158 0.842 43 H 0.175 0.825 44 H 0.130 0.870 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.119 0.881 49 H 0.127 0.873 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.684 7.577 -0.809 7.804 hybrid contribution 0.583 0.527 0.724 1.069 sum -1.100 8.104 -0.085 8.178 Atomic orbital electron populations 1.23320 0.76521 1.05302 1.02146 1.86193 1.22848 1.24966 1.86400 1.18649 0.89449 0.86106 0.90464 1.21015 1.01242 0.89983 1.10200 1.20047 0.92854 0.95655 0.93420 1.25166 1.02094 1.01172 0.90628 1.86641 1.35745 1.95377 1.15140 0.95041 0.80024 0.76665 0.89693 1.20902 0.93883 0.97153 1.13372 1.18521 0.83667 0.91451 0.94482 1.86213 1.15582 1.32187 1.87555 1.23359 0.99976 0.82022 1.02504 1.16251 0.86288 0.80282 1.21528 1.85768 1.71605 1.45232 1.56994 1.05888 0.76184 0.76073 0.73720 1.93641 1.81253 1.34855 1.82464 1.93636 1.42341 1.86343 1.72133 1.30831 1.21093 1.17713 1.06306 1.21738 0.98463 0.97271 0.93612 0.87369 1.23571 0.92430 0.99544 1.01854 1.23925 0.89153 1.01601 0.85315 1.88084 1.79803 1.34927 1.21854 1.23137 0.97563 0.83678 1.04213 1.21163 0.85902 0.74262 0.80429 1.93186 1.89350 1.42998 1.90792 1.93227 1.64012 1.80474 1.77728 1.93183 1.91138 1.76163 1.55064 1.23493 0.90882 0.95087 1.06984 0.87145 0.91788 0.91488 0.83094 0.85408 0.77332 1.17505 1.18074 0.83404 0.91647 0.87040 0.91374 0.84192 0.82487 0.86991 0.88459 0.92826 0.92631 0.88063 0.87253 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.29 -0.98 9.72 -41.62 -0.40 -1.38 16 3 C 0.20 0.51 5.93 -39.15 -0.23 0.28 16 4 C -0.21 0.03 8.67 -39.43 -0.34 -0.31 16 5 C -0.02 0.03 5.35 -104.63 -0.56 -0.53 16 6 C -0.08 0.21 2.80 36.01 0.10 0.31 16 7 O -0.52 0.63 12.83 -35.23 -0.45 0.18 16 8 Si 0.69 -2.42 29.87 -169.99 -5.08 -7.49 16 9 C -0.23 0.48 7.66 -39.43 -0.30 0.18 16 10 C 0.17 -0.02 5.83 -39.15 -0.23 -0.25 16 11 O -0.30 0.50 7.48 -34.32 -0.26 0.24 16 12 C 0.02 -0.08 9.81 101.05 0.99 0.91 16 13 C 0.00 0.00 4.82 -39.03 -0.19 -0.19 16 14 O -0.64 -2.74 9.62 -56.04 -0.54 -3.28 16 15 S 2.59 9.43 5.16 -107.50 -0.55 8.87 16 16 O -0.92 -6.27 18.09 -67.04 -1.21 -7.48 16 17 O -0.95 -4.76 15.81 -68.55 -1.08 -5.84 16 18 C -0.63 0.33 4.10 37.16 0.15 0.48 16 19 C -0.09 0.12 3.84 -89.81 -0.35 -0.23 16 20 H 0.11 -0.27 8.13 -51.93 -0.42 -0.69 16 21 C -0.14 0.35 6.51 -25.92 -0.17 0.18 16 22 C 0.04 -0.01 0.85 -89.81 -0.08 -0.09 16 23 O -0.33 0.01 8.35 -35.23 -0.29 -0.28 16 24 C 0.01 -0.02 10.34 101.05 1.04 1.02 16 25 C 0.44 0.47 2.51 37.16 0.09 0.56 16 26 F -0.18 -0.17 15.37 2.25 0.03 -0.14 16 27 F -0.17 -0.51 17.09 2.25 0.04 -0.47 16 28 F -0.17 -0.21 15.83 2.25 0.04 -0.18 16 29 C -0.13 0.04 6.89 -25.92 -0.18 -0.14 16 30 H 0.11 -0.26 8.14 -51.93 -0.42 -0.69 16 31 H 0.06 -0.17 7.66 -51.93 -0.40 -0.56 16 32 H 0.07 -0.15 7.66 -51.93 -0.40 -0.55 16 33 H 0.15 -0.27 6.29 -52.49 -0.33 -0.60 16 34 H 0.13 -0.47 7.96 -51.93 -0.41 -0.88 16 35 H 0.38 -1.49 8.70 45.56 0.40 -1.10 16 36 H -0.25 0.01 7.11 56.52 0.40 0.41 16 37 H -0.26 0.57 7.01 56.52 0.40 0.96 16 38 H 0.15 -0.68 3.06 -52.49 -0.16 -0.84 16 39 H 0.06 -0.37 7.67 -51.93 -0.40 -0.77 16 40 H 0.11 -0.78 8.14 -51.93 -0.42 -1.20 16 41 H 0.07 -0.50 7.65 -51.93 -0.40 -0.90 16 42 H 0.14 -0.38 6.00 -51.93 -0.31 -0.69 16 43 H 0.16 -0.11 6.08 -51.92 -0.32 -0.42 16 44 H 0.11 -0.40 8.06 -51.93 -0.42 -0.82 16 45 H 0.10 -0.40 6.64 -51.93 -0.34 -0.74 16 46 H 0.05 -0.09 6.59 -51.93 -0.34 -0.43 16 47 H 0.06 -0.25 6.60 -51.93 -0.34 -0.59 16 48 H 0.10 -0.41 8.14 -51.93 -0.42 -0.84 16 49 H 0.11 0.08 8.10 -51.93 -0.42 -0.35 16 50 H 0.12 -0.21 7.01 -51.93 -0.36 -0.57 16 LS Contribution 419.38 15.07 6.32 6.32 Total: 0.00 -12.09 419.38 -8.55 -20.63 By element: Atomic # 1 Polarization: -7.00 SS G_CDS: -5.85 Total: -12.86 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 0.75 Total: 3.15 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -4.24 Total: -17.85 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.11 Total: -0.78 kcal Atomic # 14 Polarization: -2.42 SS G_CDS: -5.08 Total: -7.49 kcal Atomic # 16 Polarization: 9.43 SS G_CDS: -0.55 Total: 8.87 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -12.09 -8.55 -20.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79635_17541816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -299.363 kcal (2) G-P(sol) polarization free energy of solvation -12.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -311.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -319.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds