Wall clock time and date at job start Mon Mar 8 2021 12:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35997 * 117.00141 * 2 1 4 4 C 1.38667 * 120.04293 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.08771 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.90960 * 180.02562 * 5 4 3 7 7 O 1.42906 * 109.46887 * 64.99808 * 6 5 4 8 8 Si 1.86291 * 109.47207 * 184.99916 * 6 5 4 9 9 C 1.38226 * 120.17882 * 0.29490 * 5 4 3 10 10 C 1.38665 * 120.09064 * 359.45367 * 9 5 4 11 11 O 1.35997 * 120.04908 * 180.29472 * 10 9 5 12 12 C 1.42904 * 116.99605 * 0.23467 * 11 10 9 13 13 C 1.38974 * 120.04614 * 179.97438 * 3 2 1 14 14 O 1.36098 * 120.09225 * 359.97438 * 13 3 2 15 15 S 1.52200 * 113.99602 * 89.99774 * 14 13 3 16 16 O 1.42102 * 104.27340 * 191.07323 * 15 14 13 17 17 O 1.42098 * 104.28230 * 318.93497 * 15 14 13 18 18 C 1.81403 * 104.44729 * 75.00665 * 15 14 13 19 19 C 1.52996 * 109.47308 * 179.97438 * 18 15 14 20 20 H 1.09005 * 112.84845 * 43.80247 * 19 18 15 21 21 C 1.53782 * 113.61663 * 175.00025 * 19 18 15 22 22 C 1.53775 * 87.08130 * 89.11573 * 21 19 18 23 23 O 1.42900 * 113.61380 * 270.88462 * 22 21 19 24 24 C 1.42901 * 113.99869 * 294.69326 * 23 22 21 25 25 C 1.53002 * 113.61151 * 140.06412 * 22 21 19 26 26 F 1.39896 * 109.47258 * 54.77591 * 25 22 21 27 27 F 1.39905 * 109.46875 * 174.76903 * 25 22 21 28 28 F 1.39900 * 109.47377 * 294.76893 * 25 22 21 29 29 C 1.53780 * 87.08332 * 25.43359 * 22 21 19 30 30 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47527 * 299.99785 * 1 2 3 32 32 H 1.09000 * 109.47433 * 59.99711 * 1 2 3 33 33 H 1.08002 * 119.95798 * 359.97414 * 4 3 2 34 34 H 1.09003 * 109.47167 * 305.00259 * 6 5 4 35 35 H 0.96688 * 113.99970 * 60.00374 * 7 6 5 36 36 H 1.48496 * 110.00249 * 179.97438 * 8 6 5 37 37 H 1.48504 * 110.00218 * 301.31710 * 8 6 5 38 38 H 1.07998 * 119.94944 * 179.70720 * 9 5 4 39 39 H 1.08999 * 109.47423 * 59.99585 * 12 11 10 40 40 H 1.08998 * 109.47030 * 180.02562 * 12 11 10 41 41 H 1.09005 * 109.46474 * 299.99254 * 12 11 10 42 42 H 1.08995 * 109.46960 * 299.99547 * 18 15 14 43 43 H 1.09004 * 109.47267 * 59.99692 * 18 15 14 44 44 H 1.09000 * 113.61160 * 203.66472 * 21 19 18 45 45 H 1.08998 * 113.60902 * 334.56031 * 21 19 18 46 46 H 1.09000 * 109.47206 * 296.99848 * 24 23 22 47 47 H 1.08996 * 109.46836 * 57.00100 * 24 23 22 48 48 H 1.08998 * 109.46687 * 176.99498 * 24 23 22 49 49 H 1.08997 * 113.61603 * 220.01826 * 29 22 21 50 50 H 1.08998 * 113.61615 * 89.11414 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3753 0.0005 5 6 1.9187 3.6074 0.0011 6 6 1.0950 4.8694 0.0022 7 8 0.3583 4.9562 1.2237 8 14 2.2207 6.3459 -0.1503 9 6 3.2988 3.6851 -0.0051 10 6 4.0604 2.5263 -0.0004 11 8 5.4181 2.6038 -0.0004 12 6 5.9932 3.9120 -0.0001 13 6 3.4342 1.2855 0.0005 14 8 4.1782 0.1459 0.0016 15 16 4.5171 -0.3733 -1.3884 16 8 5.0483 -1.6710 -1.1578 17 8 3.3193 -0.1934 -2.1315 18 6 5.8118 0.7474 -1.9869 19 6 6.2427 0.3244 -3.3927 20 1 5.3994 0.0765 -4.0373 21 6 7.2533 1.2844 -4.0423 22 6 8.3584 0.4366 -3.3907 23 8 8.7143 0.8720 -2.0769 24 6 9.3139 2.1685 -2.0368 25 6 9.5741 0.2159 -4.2932 26 9 10.0664 1.4528 -4.7230 27 9 10.5693 -0.4590 -3.5781 28 9 9.1982 -0.5478 -5.4034 29 6 7.3597 -0.7327 -3.4027 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 0.2135 2.3188 0.0005 34 1 0.4024 4.8520 -0.8393 35 1 0.9118 4.9761 2.0162 36 1 1.4204 7.5968 -0.1510 37 1 3.1906 6.3635 0.9741 38 1 3.7845 4.6497 -0.0094 39 1 5.6690 4.4513 0.8899 40 1 7.0802 3.8310 -0.0006 41 1 5.6691 4.4514 -0.8902 42 1 5.4255 1.7662 -2.0162 43 1 6.6695 0.7032 -1.3156 44 1 7.2565 1.2433 -5.1315 45 1 7.1988 2.3022 -3.6563 46 1 10.2537 2.1514 -2.5886 47 1 8.6394 2.8948 -2.4903 48 1 9.5056 2.4481 -1.0009 49 1 7.3912 -1.3431 -2.5003 50 1 7.3919 -1.3251 -4.3170 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79635_17541816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:54:24 Heat of formation + Delta-G solvation = -324.359140 kcal Electronic energy + Delta-G solvation = -46506.498621 eV Core-core repulsion = 40181.970955 eV Total energy + Delta-G solvation = -6324.527666 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.113 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -51.23207 -48.76452 -48.70276 -42.73482 -41.42530 -40.33866 -40.30248 -38.82484 -38.34252 -37.32716 -37.18581 -36.91107 -32.29628 -31.72624 -31.01131 -28.94896 -28.33512 -28.19941 -27.79728 -26.78566 -26.72773 -23.81750 -23.45143 -23.31284 -21.92185 -20.70977 -20.07345 -19.76129 -19.53605 -19.31126 -19.27069 -18.92400 -18.65434 -18.13212 -17.56162 -17.52295 -17.24419 -16.96069 -16.73509 -16.57957 -16.42947 -16.13779 -16.08708 -15.91242 -15.71762 -15.63193 -15.56346 -15.32703 -15.23048 -15.10873 -14.87892 -14.83687 -14.67549 -14.56610 -14.28613 -14.10064 -14.02620 -13.71978 -13.40860 -13.37962 -13.25492 -13.21674 -13.08802 -13.08052 -12.88845 -12.82953 -12.59960 -12.52278 -12.26376 -12.16477 -12.10469 -12.04454 -11.80741 -11.75182 -11.36248 -10.76586 -10.70028 -9.79146 -9.46160 -4.93258 -1.05472 -0.20517 0.02262 1.00170 1.25422 1.54788 1.58429 1.59767 1.98664 2.13097 2.13662 2.39701 2.53452 2.58306 2.64936 2.87265 2.92749 3.16854 3.23210 3.33227 3.35574 3.40427 3.52695 3.55323 3.61881 3.77175 3.95447 4.03512 4.18367 4.24848 4.30476 4.33058 4.34867 4.39380 4.44769 4.47589 4.48541 4.55055 4.59649 4.60328 4.65855 4.69532 4.71015 4.77585 4.78834 4.84505 4.90121 4.98289 5.05551 5.12414 5.78200 5.98177 6.07653 6.45173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.179 3.821 4 C -0.210 4.210 5 C -0.011 4.011 6 C -0.092 4.092 7 O -0.542 6.542 8 Si 0.770 3.230 9 C -0.224 4.224 10 C 0.173 3.827 11 O -0.313 6.313 12 C -0.005 4.005 13 C -0.036 4.036 14 O -0.653 6.653 15 S 2.576 3.424 16 O -0.973 6.973 17 O -0.970 6.970 18 C -0.605 4.605 19 C -0.098 4.098 20 H 0.121 0.879 21 C -0.121 4.121 22 C 0.041 3.959 23 O -0.345 6.345 24 C 0.000 4.000 25 C 0.433 3.567 26 F -0.180 7.180 27 F -0.189 7.189 28 F -0.177 7.177 29 C -0.142 4.142 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.389 0.611 36 H -0.301 1.301 37 H -0.265 1.265 38 H 0.178 0.822 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.096 0.904 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.041 0.959 47 H 0.081 0.919 48 H 0.116 0.884 49 H 0.091 0.909 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 11.138 -1.813 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.130 3.870 4 C -0.229 4.229 5 C -0.012 4.012 6 C -0.200 4.200 7 O -0.350 6.350 8 Si 0.673 3.327 9 C -0.243 4.243 10 C 0.124 3.876 11 O -0.226 6.226 12 C -0.098 4.098 13 C -0.080 4.080 14 O -0.612 6.612 15 S 2.676 3.324 16 O -0.972 6.972 17 O -0.968 6.968 18 C -0.735 4.735 19 C -0.117 4.117 20 H 0.139 0.861 21 C -0.159 4.159 22 C -0.002 4.002 23 O -0.263 6.263 24 C -0.095 4.095 25 C 0.378 3.622 26 F -0.162 7.162 27 F -0.171 7.171 28 F -0.159 7.159 29 C -0.179 4.179 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.239 0.761 36 H -0.229 1.229 37 H -0.191 1.191 38 H 0.195 0.805 39 H 0.089 0.911 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.186 0.814 43 H 0.180 0.820 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.134 0.866 49 H 0.109 0.891 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.251 10.696 -1.471 10.869 hybrid contribution 0.465 -0.338 0.970 1.128 sum -0.787 10.358 -0.501 10.400 Atomic orbital electron populations 1.23555 0.75037 1.06227 1.03319 1.86138 1.24687 1.26213 1.86886 1.18987 0.89872 0.86521 0.91654 1.21178 1.01725 0.89787 1.10197 1.20228 0.93302 0.95468 0.92211 1.25485 1.02730 1.01193 0.90586 1.86618 1.36887 1.95424 1.16051 0.94145 0.77933 0.72660 0.87962 1.21177 0.93545 0.97684 1.11860 1.18540 0.84632 0.90730 0.93710 1.86220 1.14585 1.34662 1.87094 1.23833 1.01062 0.80725 1.04184 1.16805 0.86723 0.80713 1.23771 1.85722 1.72124 1.46418 1.56944 1.06000 0.76699 0.76139 0.73519 1.93569 1.81900 1.38423 1.83274 1.93588 1.44090 1.86657 1.72474 1.30595 1.18866 1.17332 1.06742 1.21849 0.98983 0.97585 0.93318 0.86139 1.23631 0.89648 1.00075 1.02575 1.24019 0.88627 1.02204 0.85358 1.88074 1.79978 1.36359 1.21930 1.23372 0.97566 0.83189 1.05365 1.21499 0.86095 0.74056 0.80531 1.93183 1.89426 1.42760 1.90802 1.93190 1.64868 1.80893 1.78119 1.93171 1.91105 1.76316 1.55272 1.23631 0.91984 0.95610 1.06678 0.86469 0.90400 0.90480 0.82098 0.84426 0.76136 1.22860 1.19084 0.80532 0.91141 0.85158 0.88537 0.81366 0.81995 0.85521 0.85943 0.94022 0.90047 0.86612 0.89053 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.33 -3.00 9.72 -72.58 -0.71 -3.71 16 3 C 0.18 1.16 5.93 22.55 0.13 1.30 16 4 C -0.21 0.01 8.67 22.37 0.19 0.21 16 5 C -0.01 0.05 5.35 -19.87 -0.11 -0.06 16 6 C -0.09 0.63 2.80 71.24 0.20 0.83 16 7 O -0.54 1.82 12.83 -148.98 -1.91 -0.09 16 8 Si 0.77 -7.07 29.87 68.60 2.05 -5.02 16 9 C -0.22 1.36 7.66 22.37 0.17 1.54 16 10 C 0.17 -0.19 5.83 22.55 0.13 -0.06 16 11 O -0.31 1.57 7.48 -79.57 -0.60 0.97 16 12 C 0.00 0.07 9.81 113.37 1.11 1.18 16 13 C -0.04 -0.24 4.82 22.63 0.11 -0.13 16 14 O -0.65 -7.13 9.62 -60.25 -0.58 -7.71 16 15 S 2.58 24.13 5.16 -56.49 -0.29 23.84 16 16 O -0.97 -16.64 18.09 -118.57 -2.15 -18.78 16 17 O -0.97 -11.91 15.81 -117.13 -1.85 -13.77 16 18 C -0.61 0.87 4.10 71.98 0.30 1.16 16 19 C -0.10 0.32 3.84 -10.27 -0.04 0.28 16 20 H 0.12 -0.67 8.13 -2.38 -0.02 -0.69 16 21 C -0.12 0.89 6.51 31.12 0.20 1.09 16 22 C 0.04 -0.05 0.85 -10.27 -0.01 -0.06 16 23 O -0.35 0.28 8.35 -148.98 -1.24 -0.96 16 24 C 0.00 0.00 10.34 113.37 1.17 1.17 16 25 C 0.43 0.87 2.51 71.98 0.18 1.05 16 26 F -0.18 -0.19 15.37 44.97 0.69 0.50 16 27 F -0.19 -1.27 17.09 44.97 0.77 -0.50 16 28 F -0.18 -0.44 15.83 44.97 0.71 0.28 16 29 C -0.14 -0.01 6.89 31.12 0.21 0.21 16 30 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.08 -0.32 7.66 -2.39 -0.02 -0.33 16 32 H 0.08 -0.25 7.66 -2.39 -0.02 -0.27 16 33 H 0.16 -0.53 6.29 -2.91 -0.02 -0.54 16 34 H 0.14 -1.22 7.96 -2.39 -0.02 -1.24 16 35 H 0.39 -3.45 8.70 -74.07 -0.64 -4.10 16 36 H -0.30 0.15 7.11 99.48 0.71 0.86 16 37 H -0.27 1.98 7.01 99.48 0.70 2.68 16 38 H 0.18 -2.25 3.06 -2.91 -0.01 -2.26 16 39 H 0.07 -1.02 7.67 -2.39 -0.02 -1.04 16 40 H 0.13 -2.29 8.14 -2.39 -0.02 -2.31 16 41 H 0.10 -1.87 7.65 -2.38 -0.02 -1.89 16 42 H 0.17 -1.25 6.00 -2.39 -0.01 -1.26 16 43 H 0.16 -0.28 6.08 -2.39 -0.01 -0.29 16 44 H 0.13 -1.24 8.06 -2.39 -0.02 -1.26 16 45 H 0.12 -1.51 6.64 -2.39 -0.02 -1.52 16 46 H 0.04 -0.17 6.59 -2.39 -0.02 -0.19 16 47 H 0.08 -1.00 6.60 -2.39 -0.02 -1.02 16 48 H 0.12 -1.18 8.14 -2.39 -0.02 -1.19 16 49 H 0.09 0.33 8.10 -2.39 -0.02 0.31 16 50 H 0.13 -0.34 7.01 -2.39 -0.02 -0.35 16 Total: 0.00 -32.80 419.38 0.40 -32.40 By element: Atomic # 1 Polarization: -18.70 SS G_CDS: 0.43 Total: -18.26 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 5.07 Total: 10.80 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -9.03 Total: -44.04 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 2.17 Total: 0.28 kcal Atomic # 14 Polarization: -7.07 SS G_CDS: 2.05 Total: -5.02 kcal Atomic # 16 Polarization: 24.13 SS G_CDS: -0.29 Total: 23.84 kcal Total: -32.80 0.40 -32.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79635_17541816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -291.959 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -324.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -324.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds