Wall clock time and date at job start Mon Mar 8 2021 13:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46958 * 2 1 4 4 C 1.35999 * 116.99674 * 180.02562 * 3 2 1 5 5 C 1.39159 * 120.06895 * 180.29711 * 4 3 2 6 6 O 1.35992 * 120.07715 * 359.97438 * 5 4 3 7 7 S 1.52202 * 113.99729 * 267.21729 * 6 5 4 8 8 O 1.42099 * 104.27600 * 40.68703 * 7 6 5 9 9 O 1.42106 * 104.27558 * 168.53836 * 7 6 5 10 10 C 1.81387 * 104.44986 * 284.60943 * 7 6 5 11 11 H 1.09002 * 112.85241 * 54.59886 * 10 7 6 12 12 C 1.53786 * 113.61642 * 185.78748 * 10 7 6 13 13 C 1.53786 * 87.08090 * 139.97916 * 12 10 7 14 14 H 1.09004 * 113.60715 * 89.20139 * 13 12 10 15 15 C 1.50697 * 113.61659 * 220.02030 * 13 12 10 16 16 O 1.20829 * 120.00211 * 0.02562 * 15 13 12 17 17 O 1.34227 * 119.99918 * 180.02562 * 15 13 12 18 18 C 1.45200 * 116.99814 * 180.02562 * 17 15 13 19 19 C 1.53781 * 113.61833 * 283.39830 * 10 7 6 20 20 C 1.38567 * 119.85122 * 180.27532 * 5 4 3 21 21 C 1.38245 * 119.99464 * 359.73051 * 20 5 4 22 22 C 1.38247 * 120.15333 * 359.97068 * 21 20 5 23 23 C 1.50697 * 119.93065 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.47108 * 244.98129 * 23 22 21 25 25 Si 1.86298 * 109.47024 * 4.97893 * 23 22 21 26 26 C 1.38244 * 120.14473 * 0.03073 * 22 21 20 27 27 H 1.09004 * 109.47271 * 59.99869 * 1 2 3 28 28 H 1.08997 * 109.47489 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47098 * 299.99773 * 1 2 3 30 30 H 1.09004 * 109.47098 * 240.00227 * 2 1 3 31 31 H 1.08996 * 109.47443 * 120.00451 * 2 1 3 32 32 H 1.08990 * 113.61747 * 254.53452 * 12 10 7 33 33 H 1.09004 * 113.60733 * 25.43653 * 12 10 7 34 34 H 1.09002 * 109.47195 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.47312 * 299.99347 * 18 17 15 36 36 H 1.09005 * 109.47370 * 59.99761 * 18 17 15 37 37 H 1.09004 * 113.61055 * 334.57112 * 19 10 7 38 38 H 1.09001 * 113.61537 * 105.46733 * 19 10 7 39 39 H 1.07997 * 119.99946 * 179.74458 * 20 5 4 40 40 H 1.08009 * 119.91959 * 179.97438 * 21 20 5 41 41 H 1.08993 * 109.47243 * 124.98187 * 23 22 21 42 42 H 0.96708 * 114.00075 * 59.99643 * 24 23 22 43 43 H 1.48500 * 110.00024 * 58.68189 * 25 23 22 44 44 H 1.48505 * 110.00055 * 180.02562 * 25 23 22 45 45 H 1.07998 * 120.00099 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 3.8880 2.8107 0.0057 6 8 3.0624 3.8913 0.0118 7 16 2.7393 4.4313 -1.3741 8 8 2.5476 3.2681 -2.1674 9 8 1.6783 5.3505 -1.1534 10 6 4.2448 5.3067 -1.8811 11 1 5.1359 4.6811 -1.8298 12 6 4.0991 6.0629 -3.2123 13 6 4.9185 7.1941 -2.5689 14 1 5.9945 7.0862 -2.7063 15 6 4.4197 8.5732 -2.9154 16 8 3.4594 8.7049 -3.6368 17 8 5.0421 9.6555 -2.4225 18 6 4.5066 10.9519 -2.7977 19 6 4.4159 6.6788 -1.2081 20 6 5.2624 2.9871 -0.0007 21 6 6.1002 1.8874 -0.0075 22 6 5.5703 0.6106 -0.0075 23 6 6.4882 -0.5845 -0.0144 24 8 6.3205 -1.3069 -1.2358 25 14 8.2549 -0.0114 0.1305 26 6 4.2000 0.4277 -0.0012 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.6044 5.5781 -4.0474 33 1 3.0720 6.3451 -3.4438 34 1 5.1002 11.7388 -2.3324 35 1 4.5442 11.0608 -3.8816 36 1 3.4729 11.0295 -2.4604 37 1 3.4757 7.1297 -0.8907 38 1 5.1768 6.6904 -0.4276 39 1 5.6790 3.9834 -0.0001 40 1 7.1714 2.0263 -0.0129 41 1 6.2465 -1.2332 0.8275 42 1 6.5188 -0.7902 -2.0289 43 1 8.4349 0.7685 1.3813 44 1 9.1704 -1.1807 0.1242 45 1 3.7885 -0.5708 -0.0007 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79649_13206342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:08:10 Heat of formation + Delta-G solvation = -188.898194 kcal Electronic energy + Delta-G solvation = -33306.845765 eV Core-core repulsion = 28579.403150 eV Total energy + Delta-G solvation = -4727.442614 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.110 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.50589 -41.88821 -40.35448 -39.64306 -39.32116 -38.17183 -37.38183 -37.31194 -37.05100 -33.09468 -32.32638 -30.99209 -29.91674 -27.81666 -27.33636 -27.12146 -25.30507 -23.78649 -23.30329 -22.97599 -21.66377 -20.91407 -19.80850 -19.38519 -19.05725 -18.55181 -18.43183 -18.14354 -17.63160 -17.47877 -17.16614 -16.96728 -16.64222 -16.43938 -16.25781 -15.88452 -15.52349 -15.29112 -14.85149 -14.57231 -14.51068 -14.44803 -14.19838 -14.04284 -13.86792 -13.74979 -13.63624 -13.61439 -13.44155 -13.13954 -13.13143 -13.06212 -12.96940 -12.86299 -12.73844 -12.51025 -12.26495 -12.05521 -11.93040 -11.83677 -11.81208 -11.65699 -11.25685 -10.68659 -10.26973 -9.51820 -5.20178 -1.08402 -0.23274 -0.01135 0.98250 1.08391 1.11641 1.48520 1.63437 1.82704 1.90093 2.13830 2.48026 2.60689 2.83353 3.05639 3.07772 3.19009 3.29830 3.40797 3.46075 3.60047 3.75625 3.81328 3.86865 3.90133 3.98525 4.01617 4.14896 4.15587 4.21072 4.23693 4.24536 4.26853 4.27909 4.39978 4.49882 4.56158 4.59350 4.66979 4.68451 4.79743 4.82017 4.85536 5.01823 5.11836 5.30166 5.33540 6.10335 6.37898 6.67047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 O -0.298 6.298 4 C 0.169 3.831 5 C 0.035 3.965 6 O -0.647 6.647 7 S 2.596 3.404 8 O -0.938 6.938 9 O -0.918 6.918 10 C -0.658 4.658 11 H 0.163 0.837 12 C -0.087 4.087 13 C -0.095 4.095 14 H 0.138 0.862 15 C 0.466 3.534 16 O -0.498 6.498 17 O -0.356 6.356 18 C 0.033 3.967 19 C -0.092 4.092 20 C -0.089 4.089 21 C -0.139 4.139 22 C -0.060 4.060 23 C -0.075 4.075 24 O -0.535 6.535 25 Si 0.691 3.309 26 C -0.169 4.169 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.120 0.880 42 H 0.382 0.618 43 H -0.253 1.253 44 H -0.251 1.251 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 -0.540 0.128 6.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 O -0.210 6.210 4 C 0.119 3.881 5 C -0.008 4.008 6 O -0.606 6.606 7 S 2.690 3.310 8 O -0.936 6.936 9 O -0.916 6.916 10 C -0.763 4.763 11 H 0.181 0.819 12 C -0.125 4.125 13 C -0.115 4.115 14 H 0.156 0.844 15 C 0.308 3.692 16 O -0.385 6.385 17 O -0.272 6.272 18 C -0.061 4.061 19 C -0.130 4.130 20 C -0.109 4.109 21 C -0.157 4.157 22 C -0.062 4.062 23 C -0.185 4.185 24 O -0.341 6.341 25 Si 0.592 3.408 26 C -0.188 4.188 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.171 0.829 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.230 0.770 43 H -0.178 1.178 44 H -0.176 1.176 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.254 -0.980 0.954 6.402 hybrid contribution -0.115 0.202 0.117 0.260 sum 6.138 -0.778 1.071 6.279 Atomic orbital electron populations 1.21819 0.91967 1.03397 1.04102 1.23020 0.96729 0.80721 1.02008 1.86201 1.17284 1.30758 1.86805 1.19005 0.84027 0.92236 0.92823 1.17289 0.87685 0.81121 1.14704 1.85758 1.68315 1.49110 1.57413 1.05664 0.76502 0.75261 0.73602 1.93653 1.84691 1.45295 1.69985 1.93663 1.49348 1.65903 1.82705 1.32349 1.24717 1.10355 1.08895 0.81916 1.22619 1.03180 0.92964 0.93740 1.22461 1.03201 0.87353 0.98489 0.84380 1.23472 0.81195 0.87278 0.77220 1.90715 1.26248 1.87112 1.34398 1.86500 1.56600 1.15798 1.68328 1.23358 1.00387 0.80670 1.01656 1.22681 1.04556 0.89890 0.95918 1.21165 0.89737 1.01214 0.98747 1.20765 0.99701 0.90949 1.04288 1.20404 0.94247 0.95286 0.96214 1.25198 1.08463 0.94061 0.90775 1.86539 1.92142 1.40572 1.14845 0.94741 0.75041 0.83294 0.87745 1.21116 0.93045 0.98370 1.06288 0.90990 0.89767 0.91243 0.91008 0.91439 0.87598 0.87266 0.87745 0.91631 0.91569 0.87255 0.87571 0.82921 0.83747 0.86305 0.77026 1.17772 1.17607 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.05 10.28 37.16 0.38 0.43 16 2 C 0.05 0.02 5.46 37.16 0.20 0.22 16 3 O -0.30 -1.12 9.65 -36.53 -0.35 -1.47 16 4 C 0.17 0.42 6.01 -39.12 -0.24 0.19 16 5 C 0.03 0.06 4.76 -39.12 -0.19 -0.13 16 6 O -0.65 -1.89 9.84 -54.21 -0.53 -2.42 16 7 S 2.60 7.67 5.09 -107.50 -0.55 7.12 16 8 O -0.94 -4.75 16.15 -67.47 -1.09 -5.84 16 9 O -0.92 -5.94 17.43 -67.04 -1.17 -7.11 16 10 C -0.66 1.28 3.79 -25.92 -0.10 1.18 16 11 H 0.16 -0.89 6.20 -51.93 -0.32 -1.22 16 12 C -0.09 0.11 7.00 -25.91 -0.18 -0.07 16 13 C -0.10 0.18 4.26 -90.87 -0.39 -0.21 16 14 H 0.14 -0.67 8.14 -51.93 -0.42 -1.10 16 15 C 0.47 0.72 7.49 36.00 0.27 0.99 16 16 O -0.50 -2.37 15.65 -18.75 -0.29 -2.67 16 17 O -0.36 -0.30 10.57 -39.25 -0.41 -0.72 16 18 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 19 C -0.09 0.20 7.21 -25.83 -0.19 0.02 16 20 C -0.09 0.18 8.50 -39.46 -0.34 -0.16 16 21 C -0.14 0.40 8.66 -39.58 -0.34 0.06 16 22 C -0.06 0.09 5.35 -104.62 -0.56 -0.47 16 23 C -0.07 0.17 2.80 36.00 0.10 0.27 16 24 O -0.54 0.89 12.83 -35.23 -0.45 0.43 16 25 Si 0.69 -2.23 29.79 -169.99 -5.06 -7.30 16 26 C -0.17 -0.03 8.67 -39.46 -0.34 -0.37 16 27 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 28 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 29 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.07 -0.05 7.66 -51.93 -0.40 -0.45 16 31 H 0.07 -0.10 7.66 -51.93 -0.40 -0.50 16 32 H 0.11 -0.36 8.14 -51.93 -0.42 -0.79 16 33 H 0.11 0.06 7.39 -51.93 -0.38 -0.32 16 34 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 35 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 36 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 37 H 0.11 -0.08 7.51 -51.93 -0.39 -0.47 16 38 H 0.11 -0.54 8.14 -51.93 -0.42 -0.97 16 39 H 0.15 -0.87 7.04 -52.49 -0.37 -1.24 16 40 H 0.15 -0.83 4.90 -52.48 -0.26 -1.09 16 41 H 0.12 -0.25 7.96 -51.93 -0.41 -0.66 16 42 H 0.38 -2.10 8.70 45.56 0.40 -1.70 16 43 H -0.25 0.28 7.11 56.52 0.40 0.68 16 44 H -0.25 -0.09 7.11 56.52 0.40 0.32 16 45 H 0.15 -0.16 6.30 -52.49 -0.33 -0.49 16 LS Contribution 386.59 15.07 5.83 5.83 Total: 0.00 -13.45 386.59 -10.79 -24.24 By element: Atomic # 1 Polarization: -7.22 SS G_CDS: -5.87 Total: -13.08 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.83 Total: 2.99 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -4.30 Total: -19.80 kcal Atomic # 14 Polarization: -2.23 SS G_CDS: -5.06 Total: -7.30 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -0.55 Total: 7.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -13.45 -10.79 -24.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_13206342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.656 kcal (2) G-P(sol) polarization free energy of solvation -13.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds