Wall clock time and date at job start Mon Mar 8 2021 13:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46958 * 2 1 4 4 C 1.35999 * 116.99674 * 180.02562 * 3 2 1 5 5 C 1.39159 * 120.06895 * 180.29711 * 4 3 2 6 6 O 1.35992 * 120.07715 * 359.97438 * 5 4 3 7 7 S 1.52202 * 113.99729 * 267.21729 * 6 5 4 8 8 O 1.42099 * 104.27600 * 40.68703 * 7 6 5 9 9 O 1.42106 * 104.27558 * 168.53836 * 7 6 5 10 10 C 1.81387 * 104.44986 * 284.60943 * 7 6 5 11 11 H 1.09002 * 112.85241 * 54.59886 * 10 7 6 12 12 C 1.53786 * 113.61642 * 185.78748 * 10 7 6 13 13 C 1.53786 * 87.08090 * 139.97916 * 12 10 7 14 14 H 1.09004 * 113.60715 * 89.20139 * 13 12 10 15 15 C 1.50697 * 113.61659 * 220.02030 * 13 12 10 16 16 O 1.20829 * 120.00211 * 0.02562 * 15 13 12 17 17 O 1.34227 * 119.99918 * 180.02562 * 15 13 12 18 18 C 1.45200 * 116.99814 * 180.02562 * 17 15 13 19 19 C 1.53781 * 113.61833 * 283.39830 * 10 7 6 20 20 C 1.38567 * 119.85122 * 180.27532 * 5 4 3 21 21 C 1.38245 * 119.99464 * 359.73051 * 20 5 4 22 22 C 1.38247 * 120.15333 * 359.97068 * 21 20 5 23 23 C 1.50697 * 119.93065 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.47108 * 244.98129 * 23 22 21 25 25 Si 1.86298 * 109.47024 * 4.97893 * 23 22 21 26 26 C 1.38244 * 120.14473 * 0.03073 * 22 21 20 27 27 H 1.09004 * 109.47271 * 59.99869 * 1 2 3 28 28 H 1.08997 * 109.47489 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47098 * 299.99773 * 1 2 3 30 30 H 1.09004 * 109.47098 * 240.00227 * 2 1 3 31 31 H 1.08996 * 109.47443 * 120.00451 * 2 1 3 32 32 H 1.08990 * 113.61747 * 254.53452 * 12 10 7 33 33 H 1.09004 * 113.60733 * 25.43653 * 12 10 7 34 34 H 1.09002 * 109.47195 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.47312 * 299.99347 * 18 17 15 36 36 H 1.09005 * 109.47370 * 59.99761 * 18 17 15 37 37 H 1.09004 * 113.61055 * 334.57112 * 19 10 7 38 38 H 1.09001 * 113.61537 * 105.46733 * 19 10 7 39 39 H 1.07997 * 119.99946 * 179.74458 * 20 5 4 40 40 H 1.08009 * 119.91959 * 179.97438 * 21 20 5 41 41 H 1.08993 * 109.47243 * 124.98187 * 23 22 21 42 42 H 0.96708 * 114.00075 * 59.99643 * 24 23 22 43 43 H 1.48500 * 110.00024 * 58.68189 * 25 23 22 44 44 H 1.48505 * 110.00055 * 180.02562 * 25 23 22 45 45 H 1.07998 * 120.00099 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 3.8880 2.8107 0.0057 6 8 3.0624 3.8913 0.0118 7 16 2.7393 4.4313 -1.3741 8 8 2.5476 3.2681 -2.1674 9 8 1.6783 5.3505 -1.1534 10 6 4.2448 5.3067 -1.8811 11 1 5.1359 4.6811 -1.8298 12 6 4.0991 6.0629 -3.2123 13 6 4.9185 7.1941 -2.5689 14 1 5.9945 7.0862 -2.7063 15 6 4.4197 8.5732 -2.9154 16 8 3.4594 8.7049 -3.6368 17 8 5.0421 9.6555 -2.4225 18 6 4.5066 10.9519 -2.7977 19 6 4.4159 6.6788 -1.2081 20 6 5.2624 2.9871 -0.0007 21 6 6.1002 1.8874 -0.0075 22 6 5.5703 0.6106 -0.0075 23 6 6.4882 -0.5845 -0.0144 24 8 6.3205 -1.3069 -1.2358 25 14 8.2549 -0.0114 0.1305 26 6 4.2000 0.4277 -0.0012 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.6044 5.5781 -4.0474 33 1 3.0720 6.3451 -3.4438 34 1 5.1002 11.7388 -2.3324 35 1 4.5442 11.0608 -3.8816 36 1 3.4729 11.0295 -2.4604 37 1 3.4757 7.1297 -0.8907 38 1 5.1768 6.6904 -0.4276 39 1 5.6790 3.9834 -0.0001 40 1 7.1714 2.0263 -0.0129 41 1 6.2465 -1.2332 0.8275 42 1 6.5188 -0.7902 -2.0289 43 1 8.4349 0.7685 1.3813 44 1 9.1704 -1.1807 0.1242 45 1 3.7885 -0.5708 -0.0007 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79649_13206342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:08:09 Heat of formation + Delta-G solvation = -194.440452 kcal Electronic energy + Delta-G solvation = -33307.086095 eV Core-core repulsion = 28579.403150 eV Total energy + Delta-G solvation = -4727.682945 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.110 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.49774 -41.90979 -40.39229 -39.57666 -39.24545 -38.42461 -37.45199 -37.35455 -37.16218 -33.07150 -32.20084 -30.94322 -29.87216 -27.73850 -27.19541 -26.97794 -25.24006 -23.79000 -23.26587 -22.93348 -21.68460 -20.81975 -19.84527 -19.39056 -19.11183 -18.60848 -18.43362 -18.12254 -17.60742 -17.46589 -17.20841 -16.89172 -16.59849 -16.36716 -16.18033 -15.76500 -15.51600 -15.15291 -14.82727 -14.59049 -14.47567 -14.46505 -14.13369 -13.96927 -13.87834 -13.74843 -13.59973 -13.53648 -13.50624 -13.33583 -13.31691 -13.03032 -12.92672 -12.80635 -12.68759 -12.46265 -12.13891 -11.86850 -11.84706 -11.83741 -11.77114 -11.60825 -11.29375 -10.49824 -10.15640 -9.47827 -4.93791 -1.16425 -0.17401 0.10379 0.91380 1.05780 1.32073 1.69471 1.72405 1.94997 2.06516 2.24766 2.48506 2.62770 2.88266 3.05982 3.22862 3.34839 3.49355 3.59811 3.63720 3.74635 3.87047 3.90612 3.91538 4.03001 4.07907 4.22199 4.25352 4.27715 4.29151 4.34244 4.38018 4.43770 4.44979 4.65368 4.68822 4.70860 4.74507 4.76157 4.79011 4.82352 4.95538 4.98635 5.10191 5.16305 5.32314 5.46316 6.11162 6.62135 6.78035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.135 3.865 5 C 0.004 3.996 6 O -0.657 6.657 7 S 2.579 3.421 8 O -0.973 6.973 9 O -0.975 6.975 10 C -0.619 4.619 11 H 0.213 0.787 12 C -0.103 4.103 13 C -0.085 4.085 14 H 0.185 0.815 15 C 0.461 3.539 16 O -0.542 6.542 17 O -0.356 6.356 18 C 0.025 3.975 19 C -0.098 4.098 20 C -0.079 4.079 21 C -0.128 4.128 22 C -0.059 4.059 23 C -0.086 4.086 24 O -0.554 6.554 25 Si 0.792 3.208 26 C -0.179 4.179 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.199 0.801 40 H 0.183 0.817 41 H 0.112 0.888 42 H 0.398 0.602 43 H -0.272 1.272 44 H -0.305 1.305 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.053 -0.149 0.373 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.086 3.914 5 C -0.039 4.039 6 O -0.616 6.616 7 S 2.680 3.320 8 O -0.972 6.972 9 O -0.973 6.973 10 C -0.730 4.730 11 H 0.230 0.770 12 C -0.142 4.142 13 C -0.105 4.105 14 H 0.202 0.798 15 C 0.305 3.695 16 O -0.432 6.432 17 O -0.271 6.271 18 C -0.068 4.068 19 C -0.136 4.136 20 C -0.098 4.098 21 C -0.146 4.146 22 C -0.060 4.060 23 C -0.194 4.194 24 O -0.362 6.362 25 Si 0.697 3.303 26 C -0.198 4.198 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.169 0.831 39 H 0.216 0.784 40 H 0.200 0.800 41 H 0.129 0.871 42 H 0.249 0.751 43 H -0.198 1.198 44 H -0.233 1.233 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.312 -0.601 1.204 10.400 hybrid contribution -1.320 0.032 0.047 1.321 sum 8.992 -0.568 1.250 9.097 Atomic orbital electron populations 1.21865 0.91952 1.04504 1.03001 1.23189 0.96867 0.80105 1.02940 1.86154 1.18687 1.32209 1.87490 1.19454 0.83747 0.93603 0.94589 1.17905 0.89135 0.80468 1.16385 1.85724 1.69292 1.49656 1.56900 1.05864 0.78053 0.74709 0.73331 1.93597 1.86093 1.46865 1.70598 1.93585 1.53430 1.66788 1.83536 1.32141 1.22345 1.10146 1.08336 0.76977 1.22792 1.02344 0.93969 0.95101 1.22695 1.05270 0.84495 0.98010 0.79753 1.24274 0.80433 0.88617 0.76191 1.90704 1.28198 1.87766 1.36557 1.86503 1.56414 1.16167 1.68067 1.23545 1.00540 0.80874 1.01833 1.22866 1.04869 0.88709 0.97136 1.21699 0.87795 1.03671 0.96660 1.21197 1.01394 0.89833 1.02141 1.20616 0.93484 0.96472 0.95454 1.25475 1.09657 0.93763 0.90545 1.86509 1.92357 1.41583 1.15778 0.93676 0.70947 0.80314 0.85390 1.21219 0.93865 0.97909 1.06791 0.92516 0.87517 0.91865 0.90516 0.89971 0.84763 0.90275 0.85022 0.91933 0.92521 0.89748 0.83104 0.78433 0.80028 0.87068 0.75128 1.19817 1.23345 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.30 10.28 71.98 0.74 0.44 16 2 C 0.04 0.13 5.46 71.98 0.39 0.53 16 3 O -0.33 -3.50 9.65 -77.48 -0.75 -4.25 16 4 C 0.13 0.87 6.01 22.57 0.14 1.01 16 5 C 0.00 0.01 4.76 22.57 0.11 0.12 16 6 O -0.66 -4.68 9.84 -60.48 -0.60 -5.27 16 7 S 2.58 19.76 5.09 -56.49 -0.29 19.47 16 8 O -0.97 -12.39 16.15 -118.16 -1.91 -14.30 16 9 O -0.98 -16.44 17.43 -118.57 -2.07 -18.50 16 10 C -0.62 3.67 3.79 31.12 0.12 3.79 16 11 H 0.21 -3.45 6.20 -2.39 -0.01 -3.47 16 12 C -0.10 0.37 7.00 31.12 0.22 0.58 16 13 C -0.09 0.54 4.26 -10.95 -0.05 0.50 16 14 H 0.19 -2.85 8.14 -2.38 -0.02 -2.86 16 15 C 0.46 1.25 7.49 71.23 0.53 1.78 16 16 O -0.54 -6.01 15.65 21.96 0.34 -5.67 16 17 O -0.36 -0.28 10.57 -51.38 -0.54 -0.82 16 18 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 19 C -0.10 0.66 7.21 31.18 0.22 0.89 16 20 C -0.08 0.57 8.50 22.35 0.19 0.76 16 21 C -0.13 1.18 8.66 22.27 0.19 1.37 16 22 C -0.06 0.26 5.35 -19.86 -0.11 0.16 16 23 C -0.09 0.50 2.80 71.23 0.20 0.70 16 24 O -0.55 2.31 12.83 -148.98 -1.91 0.40 16 25 Si 0.79 -6.98 29.79 68.60 2.04 -4.94 16 26 C -0.18 -0.16 8.67 22.35 0.19 0.04 16 27 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.08 0.08 7.66 -2.38 -0.02 0.06 16 31 H 0.08 -0.08 7.66 -2.39 -0.02 -0.09 16 32 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 33 H 0.08 0.25 7.39 -2.38 -0.02 0.23 16 34 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 36 H 0.06 0.01 8.13 -2.38 -0.02 -0.01 16 37 H 0.08 -0.07 7.51 -2.38 -0.02 -0.09 16 38 H 0.15 -2.33 8.14 -2.39 -0.02 -2.35 16 39 H 0.20 -3.42 7.04 -2.91 -0.02 -3.44 16 40 H 0.18 -3.08 4.90 -2.91 -0.01 -3.09 16 41 H 0.11 -0.50 7.96 -2.39 -0.02 -0.52 16 42 H 0.40 -4.96 8.70 -74.05 -0.64 -5.60 16 43 H -0.27 1.47 7.11 99.48 0.71 2.18 16 44 H -0.31 -0.09 7.11 99.48 0.71 0.61 16 45 H 0.15 -0.11 6.30 -2.91 -0.02 -0.12 16 Total: 0.00 -40.03 386.59 -0.95 -40.98 By element: Atomic # 1 Polarization: -21.34 SS G_CDS: 0.44 Total: -20.91 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 4.29 Total: 13.82 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -7.43 Total: -48.42 kcal Atomic # 14 Polarization: -6.98 SS G_CDS: 2.04 Total: -4.94 kcal Atomic # 16 Polarization: 19.76 SS G_CDS: -0.29 Total: 19.47 kcal Total: -40.03 -0.95 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_13206342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.459 kcal (2) G-P(sol) polarization free energy of solvation -40.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds