Wall clock time and date at job start Mon Mar 8 2021 15:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42907 * 109.47331 * 2 1 4 4 C 1.35994 * 117.00165 * 180.02562 * 3 2 1 5 5 C 1.38527 * 120.07075 * 359.72121 * 4 3 2 6 6 C 1.38291 * 119.99574 * 180.27982 * 5 4 3 7 7 C 1.50696 * 119.92100 * 180.02562 * 6 5 4 8 8 O 1.42894 * 109.47259 * 299.99228 * 7 6 5 9 9 Si 1.86308 * 109.46765 * 179.97438 * 7 6 5 10 10 H 1.48493 * 109.47019 * 59.99614 * 9 7 6 11 11 H 1.48494 * 109.47008 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47063 * 299.99927 * 9 7 6 13 13 C 1.38205 * 120.14649 * 359.97438 * 6 5 4 14 14 C 1.38283 * 120.14926 * 0.02562 * 13 6 5 15 15 C 1.38522 * 119.99965 * 359.97438 * 14 13 6 16 16 O 1.35995 * 120.07525 * 179.97438 * 15 14 13 17 17 S 1.52203 * 113.99809 * 270.02245 * 16 15 14 18 18 O 1.42100 * 104.27899 * 191.07331 * 17 16 15 19 19 O 1.42102 * 104.27839 * 318.92758 * 17 16 15 20 20 C 1.81400 * 104.44947 * 74.99750 * 17 16 15 21 21 C 1.53004 * 109.47102 * 179.97438 * 20 17 16 22 22 C 1.52999 * 109.46855 * 179.97438 * 21 20 17 23 23 Si 1.86305 * 109.46850 * 179.97438 * 22 21 20 24 24 C 1.86298 * 109.46895 * 60.00510 * 23 22 21 25 25 C 1.86301 * 109.47066 * 180.02562 * 23 22 21 26 26 C 1.86291 * 109.47098 * 300.00447 * 23 22 21 27 27 H 1.08999 * 109.47478 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47334 * 300.00026 * 1 2 3 29 29 H 1.09002 * 109.47280 * 59.99999 * 1 2 3 30 30 H 1.08998 * 109.47334 * 239.99974 * 2 1 3 31 31 H 1.09002 * 109.47280 * 120.00001 * 2 1 3 32 32 H 1.07998 * 120.00172 * 0.27706 * 5 4 3 33 33 H 1.08997 * 109.47728 * 60.00023 * 7 6 5 34 34 H 0.96697 * 114.00651 * 300.00473 * 8 7 6 35 35 H 1.08002 * 119.92415 * 179.97438 * 13 6 5 36 36 H 1.07996 * 120.00118 * 179.97438 * 14 13 6 37 37 H 1.08997 * 109.47518 * 299.99972 * 20 17 16 38 38 H 1.09006 * 109.46649 * 60.00212 * 20 17 16 39 39 H 1.08997 * 109.47042 * 300.00423 * 21 20 17 40 40 H 1.09000 * 109.46667 * 60.00499 * 21 20 17 41 41 H 1.08997 * 109.47704 * 300.00094 * 22 21 20 42 42 H 1.09000 * 109.47013 * 60.00788 * 22 21 20 43 43 H 1.09000 * 109.47622 * 59.99768 * 24 23 22 44 44 H 1.08995 * 109.47205 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46950 * 299.99818 * 24 23 22 46 46 H 1.08997 * 109.46872 * 59.99729 * 25 23 22 47 47 H 1.08995 * 109.46906 * 180.02562 * 25 23 22 48 48 H 1.09000 * 109.46750 * 300.00436 * 25 23 22 49 49 H 1.08993 * 109.47675 * 60.00177 * 26 23 22 50 50 H 1.09006 * 109.46886 * 180.02562 * 26 23 22 51 51 H 1.09000 * 109.47509 * 299.99616 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1997 0.4280 0.0048 6 6 5.5705 0.6110 0.0101 7 6 6.4884 -0.5842 0.0153 8 8 6.2397 -1.3707 1.1821 9 14 8.2597 -0.0067 0.0209 10 1 8.5088 0.8142 1.2330 11 1 9.1642 -1.1843 0.0266 12 1 8.5177 0.8105 -1.1920 13 6 6.1003 1.8874 0.0095 14 6 5.2622 2.9873 0.0042 15 6 3.8882 2.8111 -0.0011 16 8 3.0625 3.8917 -0.0058 17 16 2.6815 4.3856 1.3826 18 8 1.6361 5.3190 1.1478 19 8 2.4491 3.1970 2.1259 20 6 4.1679 5.2329 1.9853 21 6 3.9082 5.7814 3.3898 22 6 5.1621 6.4955 3.8983 23 14 4.8455 7.1641 5.6082 24 6 4.4226 5.7590 6.7559 25 6 6.3721 8.0343 6.2272 26 6 3.4252 8.3682 5.5509 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7882 -0.5705 0.0048 33 1 6.3058 -1.1865 -0.8747 34 1 6.3826 -0.8976 2.0132 35 1 7.1714 2.0262 0.0141 36 1 5.6788 3.9837 0.0042 37 1 4.9995 4.5289 2.0179 38 1 4.4145 6.0556 1.3141 39 1 3.0767 6.4855 3.3568 40 1 3.6614 4.9589 4.0611 41 1 5.9932 5.7911 3.9314 42 1 5.4093 7.3179 3.2271 43 1 5.2535 5.0544 6.7894 44 1 4.2369 6.1501 7.7562 45 1 3.5292 5.2502 6.3936 46 1 6.6192 8.8564 5.5555 47 1 6.1870 8.4251 7.2277 48 1 7.2034 7.3300 6.2605 49 1 2.5319 7.8596 5.1887 50 1 3.2403 8.7598 6.5513 51 1 3.6726 9.1904 4.8795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79649_14927650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:36:41 Heat of formation + Delta-G solvation = -199.526382 kcal Electronic energy + Delta-G solvation = -31679.906533 eV Core-core repulsion = 27410.075370 eV Total energy + Delta-G solvation = -4269.831163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.143 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46708 -40.30773 -39.31883 -38.10360 -37.36179 -36.98501 -35.96821 -33.06652 -32.26336 -30.97973 -29.75585 -28.54069 -28.45206 -28.36351 -27.17904 -25.24927 -23.72490 -23.16890 -22.70723 -21.54893 -19.65213 -19.09462 -18.75775 -18.50578 -18.12488 -17.12914 -17.03476 -16.83436 -16.39507 -16.17020 -16.10790 -15.47055 -15.41410 -14.88949 -14.88275 -14.47617 -14.35981 -14.25727 -14.18377 -14.07348 -13.74773 -13.68038 -13.64208 -13.61126 -13.55542 -13.29791 -13.20371 -13.13371 -13.10348 -13.06339 -13.01027 -12.91511 -12.82939 -12.54921 -12.30752 -12.24268 -12.00750 -11.84127 -11.80588 -11.75631 -10.87771 -10.84293 -10.70196 -10.58379 -10.20275 -9.48041 -1.00677 -0.17979 0.02120 0.95297 1.11015 1.28780 1.36121 1.68803 1.76597 1.80470 1.81775 1.93529 2.17550 2.54587 2.70056 2.99816 3.18080 3.31659 3.42562 3.49387 3.58747 3.68117 3.79662 3.89812 3.93628 3.99421 4.03810 4.15797 4.23791 4.27119 4.34376 4.49493 4.59253 4.63432 4.66999 4.68550 4.69991 4.71943 4.72105 4.72646 4.74070 4.75920 4.84966 4.86679 4.91520 5.04046 5.14504 5.21649 5.33935 5.42671 5.51050 5.53484 6.14426 6.35614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 O -0.297 6.297 4 C 0.169 3.831 5 C -0.169 4.169 6 C -0.060 4.060 7 C -0.086 4.086 8 O -0.534 6.534 9 Si 0.949 3.051 10 H -0.247 1.247 11 H -0.250 1.250 12 H -0.247 1.247 13 C -0.151 4.151 14 C -0.084 4.084 15 C 0.032 3.968 16 O -0.651 6.651 17 S 2.582 3.418 18 O -0.926 6.926 19 O -0.941 6.941 20 C -0.652 4.652 21 C -0.101 4.101 22 C -0.406 4.406 23 Si 1.002 2.998 24 C -0.453 4.453 25 C -0.449 4.449 26 C -0.454 4.454 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.379 0.621 35 H 0.138 0.862 36 H 0.151 0.849 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 -1.612 0.600 5.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 O -0.209 6.209 4 C 0.120 3.880 5 C -0.187 4.187 6 C -0.062 4.062 7 C -0.197 4.197 8 O -0.340 6.340 9 Si 0.770 3.230 10 H -0.171 1.171 11 H -0.174 1.174 12 H -0.170 1.170 13 C -0.169 4.169 14 C -0.104 4.104 15 C -0.011 4.011 16 O -0.610 6.610 17 S 2.678 3.322 18 O -0.924 6.924 19 O -0.940 6.940 20 C -0.779 4.779 21 C -0.139 4.139 22 C -0.491 4.491 23 Si 1.198 2.802 24 C -0.560 4.560 25 C -0.556 4.556 26 C -0.561 4.561 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.227 0.773 35 H 0.156 0.844 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.897 -1.803 -0.078 5.219 hybrid contribution 0.214 0.604 0.347 0.729 sum 5.111 -1.199 0.269 5.257 Atomic orbital electron populations 1.21812 0.92034 1.03344 1.04064 1.23010 0.96672 0.80744 1.02003 1.86201 1.17218 1.30733 1.86737 1.19009 0.84070 0.92223 0.92700 1.21100 0.92897 0.98439 1.06308 1.20378 0.94388 0.95115 0.96271 1.25114 1.08192 0.93806 0.92557 1.86537 1.92187 1.39971 1.15258 0.85682 0.74682 0.80487 0.82104 1.17079 1.17351 1.17018 1.20814 1.00013 0.91260 1.04794 1.21122 0.89792 1.01133 0.98374 1.17292 0.87701 0.81135 1.14934 1.85760 1.68156 1.49650 1.57390 1.05975 0.77051 0.75568 0.73636 1.93647 1.51269 1.65001 1.82471 1.93650 1.84282 1.44127 1.71911 1.30982 1.22857 1.14814 1.09241 1.20962 1.00186 1.01159 0.91616 1.26164 0.99614 1.05374 1.17975 0.79335 0.67364 0.67256 0.66228 1.26170 1.05405 1.13697 1.10760 1.26100 1.15256 1.07958 1.06322 1.26178 1.13970 1.11340 1.04632 0.89803 0.91021 0.91285 0.91403 0.91034 0.83173 0.85699 0.77306 0.84419 0.83091 0.84724 0.84318 0.89965 0.89947 0.90071 0.90019 0.91179 0.91111 0.91098 0.91252 0.91145 0.91279 0.91082 0.91109 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.04 10.28 37.15 0.38 0.42 16 2 C 0.05 0.02 5.46 37.15 0.20 0.22 16 3 O -0.30 -1.17 9.35 -41.69 -0.39 -1.56 16 4 C 0.17 0.48 5.94 -39.12 -0.23 0.25 16 5 C -0.17 -0.06 8.60 -39.46 -0.34 -0.40 16 6 C -0.06 0.06 5.39 -104.62 -0.56 -0.50 16 7 C -0.09 0.20 2.82 36.00 0.10 0.30 16 8 O -0.53 0.82 12.77 -35.23 -0.45 0.37 16 9 Si 0.95 -2.41 25.07 -169.99 -4.26 -6.67 16 10 H -0.25 0.66 7.11 56.52 0.40 1.06 16 11 H -0.25 0.21 7.11 56.52 0.40 0.61 16 12 H -0.25 0.53 7.11 56.52 0.40 0.94 16 13 C -0.15 0.23 8.66 -39.58 -0.34 -0.12 16 14 C -0.08 0.06 8.46 -39.46 -0.33 -0.27 16 15 C 0.03 0.08 4.81 -39.12 -0.19 -0.11 16 16 O -0.65 -2.30 9.84 -54.22 -0.53 -2.84 16 17 S 2.58 8.45 5.17 -107.50 -0.56 7.90 16 18 O -0.93 -6.22 18.09 -67.04 -1.21 -7.44 16 19 O -0.94 -4.87 15.80 -68.58 -1.08 -5.96 16 20 C -0.65 0.76 5.46 37.16 0.20 0.96 16 21 C -0.10 0.11 4.59 -26.73 -0.12 -0.01 16 22 C -0.41 1.01 4.45 37.16 0.17 1.18 16 23 Si 1.00 -2.88 12.19 -169.99 -2.07 -4.95 16 24 C -0.45 0.71 8.65 101.05 0.87 1.58 16 25 C -0.45 0.84 8.65 101.05 0.87 1.71 16 26 C -0.45 0.61 8.65 101.05 0.87 1.49 16 27 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 31 H 0.07 -0.05 7.66 -51.93 -0.40 -0.44 16 32 H 0.15 -0.17 6.30 -52.49 -0.33 -0.50 16 33 H 0.13 -0.41 7.96 -51.93 -0.41 -0.83 16 34 H 0.38 -1.75 8.70 45.56 0.40 -1.35 16 35 H 0.14 -0.49 4.87 -52.49 -0.26 -0.75 16 36 H 0.15 -0.60 7.49 -52.49 -0.39 -0.99 16 37 H 0.13 -0.45 6.60 -51.93 -0.34 -0.79 16 38 H 0.14 -0.44 8.14 -51.92 -0.42 -0.86 16 39 H 0.08 -0.12 7.79 -51.93 -0.40 -0.53 16 40 H 0.08 -0.15 7.79 -51.93 -0.40 -0.55 16 41 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 42 H 0.08 -0.24 7.96 -51.93 -0.41 -0.66 16 43 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 45 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 46 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 47 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 48 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 49 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 50 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 51 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 LS Contribution 423.12 15.07 6.38 6.38 Total: 0.00 -10.35 423.12 -10.59 -20.94 By element: Atomic # 1 Polarization: -4.91 SS G_CDS: -7.96 Total: -12.87 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 1.55 Total: 6.70 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -3.67 Total: -17.41 kcal Atomic # 14 Polarization: -5.29 SS G_CDS: -6.33 Total: -11.63 kcal Atomic # 16 Polarization: 8.45 SS G_CDS: -0.56 Total: 7.90 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -10.35 -10.59 -20.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_14927650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.588 kcal (2) G-P(sol) polarization free energy of solvation -10.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds