Wall clock time and date at job start Mon Mar 8 2021 15:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42907 * 109.47331 * 2 1 4 4 C 1.35994 * 117.00165 * 180.02562 * 3 2 1 5 5 C 1.38527 * 120.07075 * 359.72121 * 4 3 2 6 6 C 1.38291 * 119.99574 * 180.27982 * 5 4 3 7 7 C 1.50696 * 119.92100 * 180.02562 * 6 5 4 8 8 O 1.42894 * 109.47259 * 299.99228 * 7 6 5 9 9 Si 1.86308 * 109.46765 * 179.97438 * 7 6 5 10 10 H 1.48493 * 109.47019 * 59.99614 * 9 7 6 11 11 H 1.48494 * 109.47008 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47063 * 299.99927 * 9 7 6 13 13 C 1.38205 * 120.14649 * 359.97438 * 6 5 4 14 14 C 1.38283 * 120.14926 * 0.02562 * 13 6 5 15 15 C 1.38522 * 119.99965 * 359.97438 * 14 13 6 16 16 O 1.35995 * 120.07525 * 179.97438 * 15 14 13 17 17 S 1.52203 * 113.99809 * 270.02245 * 16 15 14 18 18 O 1.42100 * 104.27899 * 191.07331 * 17 16 15 19 19 O 1.42102 * 104.27839 * 318.92758 * 17 16 15 20 20 C 1.81400 * 104.44947 * 74.99750 * 17 16 15 21 21 C 1.53004 * 109.47102 * 179.97438 * 20 17 16 22 22 C 1.52999 * 109.46855 * 179.97438 * 21 20 17 23 23 Si 1.86305 * 109.46850 * 179.97438 * 22 21 20 24 24 C 1.86298 * 109.46895 * 60.00510 * 23 22 21 25 25 C 1.86301 * 109.47066 * 180.02562 * 23 22 21 26 26 C 1.86291 * 109.47098 * 300.00447 * 23 22 21 27 27 H 1.08999 * 109.47478 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47334 * 300.00026 * 1 2 3 29 29 H 1.09002 * 109.47280 * 59.99999 * 1 2 3 30 30 H 1.08998 * 109.47334 * 239.99974 * 2 1 3 31 31 H 1.09002 * 109.47280 * 120.00001 * 2 1 3 32 32 H 1.07998 * 120.00172 * 0.27706 * 5 4 3 33 33 H 1.08997 * 109.47728 * 60.00023 * 7 6 5 34 34 H 0.96697 * 114.00651 * 300.00473 * 8 7 6 35 35 H 1.08002 * 119.92415 * 179.97438 * 13 6 5 36 36 H 1.07996 * 120.00118 * 179.97438 * 14 13 6 37 37 H 1.08997 * 109.47518 * 299.99972 * 20 17 16 38 38 H 1.09006 * 109.46649 * 60.00212 * 20 17 16 39 39 H 1.08997 * 109.47042 * 300.00423 * 21 20 17 40 40 H 1.09000 * 109.46667 * 60.00499 * 21 20 17 41 41 H 1.08997 * 109.47704 * 300.00094 * 22 21 20 42 42 H 1.09000 * 109.47013 * 60.00788 * 22 21 20 43 43 H 1.09000 * 109.47622 * 59.99768 * 24 23 22 44 44 H 1.08995 * 109.47205 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46950 * 299.99818 * 24 23 22 46 46 H 1.08997 * 109.46872 * 59.99729 * 25 23 22 47 47 H 1.08995 * 109.46906 * 180.02562 * 25 23 22 48 48 H 1.09000 * 109.46750 * 300.00436 * 25 23 22 49 49 H 1.08993 * 109.47675 * 60.00177 * 26 23 22 50 50 H 1.09006 * 109.46886 * 180.02562 * 26 23 22 51 51 H 1.09000 * 109.47509 * 299.99616 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1997 0.4280 0.0048 6 6 5.5705 0.6110 0.0101 7 6 6.4884 -0.5842 0.0153 8 8 6.2397 -1.3707 1.1821 9 14 8.2597 -0.0067 0.0209 10 1 8.5088 0.8142 1.2330 11 1 9.1642 -1.1843 0.0266 12 1 8.5177 0.8105 -1.1920 13 6 6.1003 1.8874 0.0095 14 6 5.2622 2.9873 0.0042 15 6 3.8882 2.8111 -0.0011 16 8 3.0625 3.8917 -0.0058 17 16 2.6815 4.3856 1.3826 18 8 1.6361 5.3190 1.1478 19 8 2.4491 3.1970 2.1259 20 6 4.1679 5.2329 1.9853 21 6 3.9082 5.7814 3.3898 22 6 5.1621 6.4955 3.8983 23 14 4.8455 7.1641 5.6082 24 6 4.4226 5.7590 6.7559 25 6 6.3721 8.0343 6.2272 26 6 3.4252 8.3682 5.5509 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7882 -0.5705 0.0048 33 1 6.3058 -1.1865 -0.8747 34 1 6.3826 -0.8976 2.0132 35 1 7.1714 2.0262 0.0141 36 1 5.6788 3.9837 0.0042 37 1 4.9995 4.5289 2.0179 38 1 4.4145 6.0556 1.3141 39 1 3.0767 6.4855 3.3568 40 1 3.6614 4.9589 4.0611 41 1 5.9932 5.7911 3.9314 42 1 5.4093 7.3179 3.2271 43 1 5.2535 5.0544 6.7894 44 1 4.2369 6.1501 7.7562 45 1 3.5292 5.2502 6.3936 46 1 6.6192 8.8564 5.5555 47 1 6.1870 8.4251 7.2277 48 1 7.2034 7.3300 6.2605 49 1 2.5319 7.8596 5.1887 50 1 3.2403 8.7598 6.5513 51 1 3.6726 9.1904 4.8795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79649_14927650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:36:40 Heat of formation + Delta-G solvation = -198.092049 kcal Electronic energy + Delta-G solvation = -31679.844335 eV Core-core repulsion = 27410.075370 eV Total energy + Delta-G solvation = -4269.768966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.143 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.50439 -40.37756 -39.27458 -38.38538 -37.31528 -37.17970 -35.84602 -33.05442 -32.18840 -30.96638 -29.60466 -28.37831 -28.30751 -28.22002 -27.08771 -25.21364 -23.69704 -23.13351 -22.58480 -21.59502 -19.74745 -19.14771 -18.80839 -18.59121 -18.08613 -17.18240 -17.05054 -16.83232 -16.22185 -16.05112 -16.02683 -15.49731 -15.29877 -14.86209 -14.76060 -14.51711 -14.28138 -14.13001 -14.01130 -13.95852 -13.86583 -13.59957 -13.56260 -13.53886 -13.49457 -13.35494 -13.26987 -13.14685 -13.05483 -12.99357 -12.97654 -12.93381 -12.78783 -12.45211 -12.17447 -12.03826 -11.82630 -11.80725 -11.78004 -11.61175 -10.70593 -10.68121 -10.53538 -10.41384 -10.12669 -9.49117 -1.10494 -0.17412 0.06963 0.99809 1.17529 1.53082 1.57644 1.91912 1.95195 1.99510 2.00993 2.03066 2.22576 2.55495 2.74585 2.89888 3.32615 3.45918 3.53924 3.64112 3.68834 3.79150 3.87510 3.95091 3.98377 4.08127 4.18194 4.25394 4.28640 4.43299 4.54279 4.63008 4.69739 4.75393 4.78690 4.80146 4.81374 4.82852 4.83896 4.86585 4.88261 4.88495 4.88760 4.93691 5.10743 5.11740 5.13927 5.42903 5.46554 5.60534 5.66610 5.67693 6.12653 6.69523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.042 3.958 3 O -0.328 6.328 4 C 0.140 3.860 5 C -0.174 4.174 6 C -0.057 4.057 7 C -0.088 4.088 8 O -0.550 6.550 9 Si 0.980 3.020 10 H -0.238 1.238 11 H -0.278 1.278 12 H -0.246 1.246 13 C -0.147 4.147 14 C -0.079 4.079 15 C 0.002 3.998 16 O -0.662 6.662 17 S 2.569 3.431 18 O -0.978 6.978 19 O -0.973 6.973 20 C -0.625 4.625 21 C -0.120 4.120 22 C -0.408 4.408 23 Si 1.067 2.933 24 C -0.473 4.473 25 C -0.461 4.461 26 C -0.477 4.477 27 H 0.107 0.893 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.392 0.608 35 H 0.165 0.835 36 H 0.187 0.813 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 -1.456 0.453 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.032 4.032 3 O -0.242 6.242 4 C 0.091 3.909 5 C -0.193 4.193 6 C -0.058 4.058 7 C -0.197 4.197 8 O -0.357 6.357 9 Si 0.802 3.198 10 H -0.160 1.160 11 H -0.203 1.203 12 H -0.170 1.170 13 C -0.165 4.165 14 C -0.098 4.098 15 C -0.041 4.041 16 O -0.621 6.621 17 S 2.671 3.329 18 O -0.976 6.976 19 O -0.972 6.972 20 C -0.756 4.756 21 C -0.159 4.159 22 C -0.494 4.494 23 Si 1.260 2.740 24 C -0.579 4.579 25 C -0.568 4.568 26 C -0.582 4.582 27 H 0.125 0.875 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.241 0.759 35 H 0.182 0.818 36 H 0.204 0.796 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.753 -1.655 -0.216 7.931 hybrid contribution -0.624 0.513 0.432 0.916 sum 7.129 -1.142 0.216 7.224 Atomic orbital electron populations 1.21859 0.91994 1.04482 1.02945 1.23213 0.96831 0.80011 1.03101 1.86159 1.18376 1.32357 1.87299 1.19418 0.83942 0.93384 0.94128 1.21236 0.93445 0.98180 1.06402 1.20620 0.93920 0.96105 0.95158 1.25261 1.08305 0.93447 0.92721 1.86511 1.92299 1.40755 1.16137 0.85252 0.72981 0.79245 0.82299 1.16048 1.20325 1.17006 1.21165 1.01215 0.90675 1.03442 1.21548 0.88300 1.03160 0.96830 1.17820 0.88877 0.80716 1.16670 1.85715 1.68958 1.50186 1.57237 1.06157 0.78382 0.75024 0.73368 1.93571 1.54951 1.65787 1.83298 1.93597 1.85606 1.45573 1.72379 1.30795 1.19764 1.15581 1.09434 1.21211 1.01262 1.01727 0.91704 1.26207 0.99222 1.06033 1.17938 0.78321 0.65265 0.65081 0.65362 1.26421 1.05412 1.14825 1.11207 1.26245 1.16049 1.08312 1.06167 1.26474 1.15109 1.12287 1.04340 0.87495 0.92580 0.91917 0.89712 0.90417 0.82458 0.85000 0.75885 0.81804 0.79591 0.81728 0.81529 0.90115 0.89613 0.88352 0.88728 0.90771 0.91610 0.91620 0.91061 0.91703 0.90863 0.91690 0.91590 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.23 10.28 71.98 0.74 0.51 16 2 C 0.04 0.11 5.46 71.98 0.39 0.50 16 3 O -0.33 -3.42 9.35 -72.48 -0.68 -4.10 16 4 C 0.14 0.98 5.94 22.57 0.13 1.12 16 5 C -0.17 -0.19 8.60 22.35 0.19 0.00 16 6 C -0.06 0.17 5.39 -19.86 -0.11 0.07 16 7 C -0.09 0.52 2.82 71.23 0.20 0.72 16 8 O -0.55 2.15 12.77 -148.98 -1.90 0.25 16 9 Si 0.98 -6.82 25.07 68.60 1.72 -5.10 16 10 H -0.24 2.00 7.11 99.48 0.71 2.71 16 11 H -0.28 0.60 7.11 99.48 0.71 1.31 16 12 H -0.25 1.69 7.11 99.48 0.71 2.39 16 13 C -0.15 0.78 8.66 22.27 0.19 0.97 16 14 C -0.08 0.26 8.46 22.35 0.19 0.45 16 15 C 0.00 0.01 4.81 22.57 0.11 0.12 16 16 O -0.66 -5.61 9.84 -60.52 -0.60 -6.20 16 17 S 2.57 20.56 5.17 -56.49 -0.29 20.27 16 18 O -0.98 -15.88 18.09 -118.57 -2.15 -18.03 16 19 O -0.97 -12.35 15.80 -117.10 -1.85 -14.20 16 20 C -0.62 2.50 5.46 71.98 0.39 2.89 16 21 C -0.12 0.40 4.59 30.60 0.14 0.54 16 22 C -0.41 3.06 4.45 71.98 0.32 3.38 16 23 Si 1.07 -7.15 12.19 68.60 0.84 -6.31 16 24 C -0.47 1.53 8.65 113.37 0.98 2.51 16 25 C -0.46 2.27 8.65 113.37 0.98 3.25 16 26 C -0.48 1.12 8.65 113.37 0.98 2.10 16 27 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.08 -0.15 7.67 -2.39 -0.02 -0.17 16 31 H 0.08 0.03 7.66 -2.39 -0.02 0.01 16 32 H 0.16 -0.26 6.30 -2.91 -0.02 -0.28 16 33 H 0.13 -1.00 7.96 -2.39 -0.02 -1.02 16 34 H 0.39 -3.99 8.70 -74.06 -0.64 -4.64 16 35 H 0.16 -1.77 4.87 -2.91 -0.01 -1.79 16 36 H 0.19 -2.15 7.49 -2.91 -0.02 -2.17 16 37 H 0.16 -1.63 6.60 -2.39 -0.02 -1.64 16 38 H 0.17 -1.53 8.14 -2.39 -0.02 -1.55 16 39 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 40 H 0.09 -0.34 7.79 -2.39 -0.02 -0.36 16 41 H 0.10 -1.01 7.96 -2.39 -0.02 -1.03 16 42 H 0.09 -0.89 7.96 -2.39 -0.02 -0.91 16 43 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 44 H 0.06 -0.15 7.96 -2.39 -0.02 -0.17 16 45 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 46 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 47 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 48 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 49 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 50 H 0.06 -0.11 7.96 -2.38 -0.02 -0.13 16 51 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 Total: 0.00 -27.85 423.12 1.96 -25.89 By element: Atomic # 1 Polarization: -12.63 SS G_CDS: 1.03 Total: -11.61 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 5.84 Total: 19.14 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -7.17 Total: -42.27 kcal Atomic # 14 Polarization: -13.97 SS G_CDS: 2.56 Total: -11.41 kcal Atomic # 16 Polarization: 20.56 SS G_CDS: -0.29 Total: 20.27 kcal Total: -27.85 1.96 -25.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_14927650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.205 kcal (2) G-P(sol) polarization free energy of solvation -27.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds