Wall clock time and date at job start Mon Mar 8 2021 17:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47001 * 2 1 4 4 C 1.35994 * 116.99932 * 180.02562 * 3 2 1 5 5 C 1.39156 * 120.07393 * 180.02562 * 4 3 2 6 6 O 1.35998 * 120.07295 * 359.97438 * 5 4 3 7 7 S 1.52196 * 113.99968 * 89.99982 * 6 5 4 8 8 O 1.42105 * 104.27914 * 318.93189 * 7 6 5 9 9 O 1.42099 * 104.27872 * 191.07044 * 7 6 5 10 10 C 1.81404 * 104.44745 * 74.99879 * 7 6 5 11 11 H 1.08993 * 112.85455 * 311.20018 * 10 7 6 12 12 C 1.53786 * 113.68902 * 82.46462 * 10 7 6 13 13 C 1.53779 * 87.08167 * 139.99109 * 12 10 7 14 14 H 1.08999 * 113.68916 * 220.01129 * 13 12 10 15 15 O 1.42899 * 113.61228 * 89.11594 * 13 12 10 16 16 C 1.42905 * 113.99778 * 112.50532 * 15 13 12 17 17 C 1.50699 * 109.46972 * 179.97438 * 16 15 13 18 18 C 1.38236 * 120.00094 * 269.72327 * 17 16 15 19 19 C 1.38235 * 119.99790 * 179.78783 * 18 17 16 20 20 C 1.38226 * 120.00319 * 0.44372 * 19 18 17 21 21 C 1.38236 * 119.99996 * 359.81060 * 20 19 18 22 22 C 1.38236 * 119.99946 * 359.97438 * 21 20 19 23 23 C 1.53780 * 113.61350 * 179.97438 * 10 7 6 24 24 C 1.38560 * 119.85362 * 180.25092 * 5 4 3 25 25 C 1.38244 * 119.99999 * 359.42921 * 24 5 4 26 26 C 1.38256 * 120.14321 * 0.59205 * 25 24 5 27 27 C 1.50700 * 119.92405 * 179.70821 * 26 25 24 28 28 O 1.42903 * 109.46973 * 244.97927 * 27 26 25 29 29 Si 1.86304 * 109.47389 * 4.97354 * 27 26 25 30 30 C 1.38233 * 120.14680 * 359.68054 * 26 25 24 31 31 H 1.08992 * 109.47463 * 300.00215 * 1 2 3 32 32 H 1.09005 * 109.47074 * 60.00055 * 1 2 3 33 33 H 1.09002 * 109.47014 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47043 * 239.99720 * 2 1 3 35 35 H 1.08999 * 109.46699 * 119.99722 * 2 1 3 36 36 H 1.09008 * 113.61087 * 25.44371 * 12 10 7 37 37 H 1.08999 * 113.61743 * 254.54565 * 12 10 7 38 38 H 1.09004 * 109.47054 * 299.99711 * 16 15 13 39 39 H 1.09000 * 109.47187 * 59.99767 * 16 15 13 40 40 H 1.07999 * 119.99872 * 0.02562 * 18 17 16 41 41 H 1.08006 * 119.99420 * 180.27313 * 19 18 17 42 42 H 1.08002 * 120.00259 * 179.83469 * 20 19 18 43 43 H 1.08000 * 120.00179 * 179.97438 * 21 20 19 44 44 H 1.07997 * 120.00023 * 180.02562 * 22 21 20 45 45 H 1.08994 * 113.61284 * 105.39040 * 23 10 7 46 46 H 1.09003 * 113.61656 * 334.48562 * 23 10 7 47 47 H 1.08001 * 120.00181 * 179.71894 * 24 5 4 48 48 H 1.08005 * 119.92770 * 180.29813 * 25 24 5 49 49 H 1.08997 * 109.47308 * 124.98176 * 27 26 25 50 50 H 0.96699 * 113.99951 * 59.99366 * 28 27 26 51 51 H 1.48509 * 109.99614 * 58.68585 * 29 27 26 52 52 H 1.48498 * 109.99978 * 179.97438 * 29 27 26 53 53 H 1.08001 * 120.00045 * 180.02562 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 -0.0005 5 6 3.8880 2.8107 0.0000 6 8 3.0624 3.8913 0.0005 7 16 2.6866 4.3826 1.3911 8 8 2.4571 3.1926 2.1331 9 8 1.6404 5.3165 1.1620 10 6 4.1754 5.2287 1.9897 11 1 5.0808 4.6364 1.8581 12 6 4.3077 6.6761 1.4871 13 6 4.8115 7.0357 2.8949 14 1 4.4309 7.9871 3.2665 15 8 6.2266 6.9066 3.0467 16 6 6.9060 8.1487 3.2407 17 6 8.3841 7.8950 3.3889 18 6 8.9254 7.6745 4.6416 19 6 10.2805 7.4374 4.7770 20 6 11.0958 7.4299 3.6608 21 6 10.5553 7.6555 2.4086 22 6 9.1995 7.8882 2.2727 23 6 4.0235 5.8170 3.4025 24 6 5.2624 2.9869 -0.0059 25 6 6.1003 1.8874 -0.0002 26 6 5.5702 0.6105 -0.0011 27 6 6.4883 -0.5846 -0.0016 28 8 6.3269 -1.3087 -1.2230 29 14 8.2543 -0.0112 0.1515 30 6 4.2000 0.4277 -0.0010 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.3541 7.1390 1.2332 37 1 5.0605 6.8010 0.7088 38 1 6.7325 8.7960 2.3810 39 1 6.5286 8.6324 4.1417 40 1 8.2889 7.6837 5.5141 41 1 10.7026 7.2608 5.7553 42 1 12.1549 7.2472 3.7669 43 1 11.1924 7.6500 1.5365 44 1 8.7772 8.0641 1.2944 45 1 4.5469 5.2480 4.1708 46 1 2.9923 6.0452 3.6720 47 1 5.6790 3.9833 -0.0101 48 1 7.1714 2.0262 0.0001 49 1 6.2422 -1.2321 0.8399 50 1 6.5291 -0.7931 -2.0156 51 1 8.4278 0.7704 1.4022 52 1 9.1696 -1.1806 0.1528 53 1 3.7885 -0.5709 -0.0013 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79649_15608174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:07:00 Heat of formation + Delta-G solvation = -120.723675 kcal Electronic energy + Delta-G solvation = -39490.822262 eV Core-core repulsion = 34389.264449 eV Total energy + Delta-G solvation = -5101.557813 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.142 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -42.52686 -40.78316 -40.40123 -39.94135 -39.29490 -38.44833 -37.37117 -37.22129 -36.99911 -33.07969 -32.68285 -32.23240 -31.79444 -30.96894 -27.54642 -27.17260 -26.96797 -26.50366 -25.20635 -23.56603 -23.48460 -23.09471 -22.27297 -21.86786 -21.07589 -19.72362 -19.32839 -19.03359 -18.60505 -18.20798 -17.82658 -17.46096 -17.21323 -17.15918 -16.70899 -16.61462 -16.38826 -16.23119 -15.92181 -15.78446 -15.58786 -15.27392 -15.21447 -14.79481 -14.64282 -14.49952 -14.28821 -14.22765 -14.08166 -13.91906 -13.82886 -13.64305 -13.59751 -13.56624 -13.54152 -13.35691 -13.31483 -13.16501 -12.98910 -12.80140 -12.47774 -12.19786 -12.12397 -12.04638 -11.87181 -11.85572 -11.81995 -11.73476 -11.23191 -10.57595 -10.54730 -10.20209 -9.82904 -9.77347 -9.51682 -4.99457 -1.14307 -0.20706 0.05396 0.32271 0.49396 0.92823 1.26263 1.66168 1.91745 1.99495 2.20488 2.40960 2.48800 2.69468 2.94458 3.00640 3.24755 3.32281 3.44195 3.46992 3.54984 3.69922 3.80505 3.84508 3.91233 3.91558 3.94008 3.97869 4.05110 4.14890 4.21841 4.22262 4.27045 4.29570 4.36023 4.39931 4.41217 4.46862 4.61794 4.64738 4.67857 4.72239 4.74901 4.76848 4.77097 4.80011 4.82996 4.87092 4.92007 5.07915 5.09766 5.11535 5.15030 5.40698 5.54605 5.62050 5.64596 6.08545 6.08774 6.18196 6.73350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.042 3.958 3 O -0.328 6.328 4 C 0.140 3.860 5 C 0.004 3.996 6 O -0.657 6.657 7 S 2.585 3.415 8 O -0.977 6.977 9 O -0.964 6.964 10 C -0.621 4.621 11 H 0.174 0.826 12 C -0.130 4.130 13 C 0.081 3.919 14 H 0.110 0.890 15 O -0.369 6.369 16 C 0.099 3.901 17 C -0.107 4.107 18 C -0.114 4.114 19 C -0.136 4.136 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.077 4.077 25 C -0.133 4.133 26 C -0.057 4.057 27 C -0.080 4.080 28 O -0.550 6.550 29 Si 0.781 3.219 30 C -0.178 4.178 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.183 0.817 48 H 0.176 0.824 49 H 0.115 0.885 50 H 0.398 0.602 51 H -0.278 1.278 52 H -0.298 1.298 53 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.009 2.069 -1.574 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.091 3.909 5 C -0.038 4.038 6 O -0.616 6.616 7 S 2.686 3.314 8 O -0.976 6.976 9 O -0.962 6.962 10 C -0.732 4.732 11 H 0.191 0.809 12 C -0.169 4.169 13 C 0.021 3.979 14 H 0.127 0.873 15 O -0.289 6.289 16 C 0.023 3.977 17 C -0.107 4.107 18 C -0.132 4.132 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.126 4.126 23 C -0.157 4.157 24 C -0.097 4.097 25 C -0.150 4.150 26 C -0.059 4.059 27 C -0.189 4.189 28 O -0.359 6.359 29 Si 0.686 3.314 30 C -0.196 4.196 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.121 0.879 46 H 0.130 0.870 47 H 0.200 0.800 48 H 0.192 0.808 49 H 0.132 0.868 50 H 0.249 0.751 51 H -0.204 1.204 52 H -0.225 1.225 53 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.670 1.366 -0.919 6.870 hybrid contribution -0.652 -0.148 0.575 0.881 sum 6.019 1.218 -0.344 6.150 Atomic orbital electron populations 1.21862 0.91763 1.04536 1.03062 1.23212 0.97004 0.80039 1.02936 1.86149 1.18329 1.32299 1.87351 1.19384 0.83924 0.93328 0.94290 1.17795 0.88875 0.80623 1.16508 1.85686 1.68861 1.50151 1.56902 1.05756 0.77710 0.74641 0.73329 1.93591 1.85609 1.45626 1.72736 1.93572 1.53656 1.65713 1.83232 1.32099 1.20692 1.10615 1.09752 0.80863 1.23367 1.04776 0.88719 1.00027 1.22843 0.81471 0.98755 0.94784 0.87263 1.87941 1.17739 1.30437 1.92763 1.21539 0.88111 0.85981 1.02023 1.19791 0.94751 1.02287 0.93873 1.21308 0.95752 0.98683 0.97433 1.21440 0.93923 1.00305 0.99768 1.21530 1.00891 0.98940 0.92902 1.21477 0.95536 0.99725 0.98274 1.21334 0.93888 0.98643 0.98746 1.23041 1.02635 0.97492 0.92519 1.21535 0.88351 1.03073 0.96717 1.21134 1.01100 0.90143 1.02671 1.20588 0.93719 0.96154 0.95422 1.25371 1.09152 0.93669 0.90752 1.86502 1.92268 1.41391 1.15690 0.93731 0.71756 0.80228 0.85680 1.21227 0.93628 0.98077 1.06714 0.92547 0.91684 0.87483 0.89705 0.90792 0.86800 0.86887 0.90553 0.91076 0.85250 0.84774 0.84564 0.84179 0.84463 0.87856 0.86955 0.79953 0.80766 0.86801 0.75149 1.20405 1.22546 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.31 10.28 71.98 0.74 0.43 16 2 C 0.04 0.16 5.46 71.98 0.39 0.55 16 3 O -0.33 -3.74 9.37 -72.63 -0.68 -4.42 16 4 C 0.14 1.17 5.93 22.57 0.13 1.30 16 5 C 0.00 0.03 4.80 22.57 0.11 0.14 16 6 O -0.66 -6.11 9.84 -60.55 -0.60 -6.71 16 7 S 2.58 23.45 5.14 -56.49 -0.29 23.16 16 8 O -0.98 -14.38 15.82 -117.14 -1.85 -16.23 16 9 O -0.96 -14.43 17.28 -118.57 -2.05 -16.48 16 10 C -0.62 0.22 3.97 31.12 0.12 0.35 16 11 H 0.17 -0.66 6.13 -2.39 -0.01 -0.68 16 12 C -0.13 0.44 7.47 31.12 0.23 0.67 16 13 C 0.08 -0.29 4.37 31.11 0.14 -0.16 16 14 H 0.11 -0.83 7.87 -2.39 -0.02 -0.85 16 15 O -0.37 0.37 10.26 -148.98 -1.53 -1.16 16 16 C 0.10 -0.32 5.90 71.24 0.42 0.10 16 17 C -0.11 0.00 5.51 -19.87 -0.11 -0.10 16 18 C -0.11 -0.06 9.70 22.27 0.22 0.15 16 19 C -0.14 -0.02 10.05 22.27 0.22 0.20 16 20 C -0.12 0.07 10.05 22.27 0.22 0.29 16 21 C -0.13 0.16 10.05 22.27 0.22 0.38 16 22 C -0.11 0.11 9.70 22.27 0.22 0.32 16 23 C -0.12 0.20 7.50 31.11 0.23 0.43 16 24 C -0.08 0.13 8.50 22.35 0.19 0.32 16 25 C -0.13 0.58 8.66 22.28 0.19 0.77 16 26 C -0.06 0.08 5.35 -19.86 -0.11 -0.02 16 27 C -0.08 0.27 2.80 71.24 0.20 0.47 16 28 O -0.55 1.59 12.83 -148.98 -1.91 -0.32 16 29 Si 0.78 -4.36 29.80 68.60 2.04 -2.31 16 30 C -0.18 -0.51 8.67 22.35 0.19 -0.32 16 31 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.11 -0.36 8.14 -2.39 -0.02 -0.37 16 34 H 0.08 -0.04 7.66 -2.38 -0.02 -0.06 16 35 H 0.07 0.13 7.67 -2.39 -0.02 0.12 16 36 H 0.11 -0.35 7.44 -2.38 -0.02 -0.36 16 37 H 0.11 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.08 -0.47 8.09 -2.38 -0.02 -0.49 16 39 H 0.07 -0.38 8.08 -2.39 -0.02 -0.40 16 40 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 41 H 0.13 -0.40 8.06 -2.91 -0.02 -0.43 16 42 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 43 H 0.14 -0.73 8.06 -2.91 -0.02 -0.75 16 44 H 0.14 -0.65 8.06 -2.91 -0.02 -0.67 16 45 H 0.10 -0.22 8.14 -2.39 -0.02 -0.23 16 46 H 0.11 -0.38 8.10 -2.39 -0.02 -0.40 16 47 H 0.18 -1.61 7.28 -2.91 -0.02 -1.63 16 48 H 0.18 -1.92 4.89 -2.91 -0.01 -1.94 16 49 H 0.11 -0.27 7.96 -2.39 -0.02 -0.29 16 50 H 0.40 -4.42 8.70 -74.06 -0.64 -5.06 16 51 H -0.28 0.33 7.11 99.48 0.71 1.04 16 52 H -0.30 -0.71 7.11 99.48 0.71 0.00 16 53 H 0.15 0.07 6.30 -2.91 -0.02 0.06 16 Total: 0.00 -30.47 446.42 -2.34 -32.81 By element: Atomic # 1 Polarization: -14.98 SS G_CDS: 0.34 Total: -14.64 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 4.18 Total: 6.29 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -8.62 Total: -45.32 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.04 Total: -2.31 kcal Atomic # 16 Polarization: 23.45 SS G_CDS: -0.29 Total: 23.16 kcal Total: -30.47 -2.34 -32.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_15608174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.909 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds