Wall clock time and date at job start Mon Mar 8 2021 11:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.35987 * 117.00052 * 180.02562 * 3 2 1 5 5 C 1.39162 * 120.07135 * 179.73044 * 4 3 2 6 6 O 1.35990 * 120.07227 * 359.97438 * 5 4 3 7 7 S 1.52205 * 113.99767 * 90.00382 * 6 5 4 8 8 O 1.42101 * 104.27720 * 191.07199 * 7 6 5 9 9 O 1.42097 * 104.27529 * 318.93014 * 7 6 5 10 10 C 1.81405 * 104.44785 * 75.00099 * 7 6 5 11 11 H 1.08999 * 112.84464 * 311.19585 * 10 7 6 12 12 C 1.53781 * 113.61321 * 82.50396 * 10 7 6 13 13 C 1.53781 * 87.08126 * 89.11400 * 12 10 7 14 14 H 1.08998 * 113.61460 * 270.88416 * 13 12 10 15 15 C 1.50699 * 113.61209 * 139.97620 * 13 12 10 16 16 C 1.38228 * 120.00342 * 322.23311 * 15 13 12 17 17 C 1.38235 * 120.00279 * 179.74422 * 16 15 13 18 18 C 1.38236 * 119.99968 * 0.52500 * 17 16 15 19 19 C 1.38240 * 119.99586 * 359.75028 * 18 17 16 20 20 C 1.38234 * 119.99740 * 142.50534 * 15 13 12 21 21 C 1.53776 * 113.61049 * 180.02562 * 10 7 6 22 22 C 1.38561 * 119.85424 * 179.72560 * 5 4 3 23 23 C 1.38249 * 119.99799 * 0.54274 * 22 5 4 24 24 C 1.38254 * 120.14577 * 359.72491 * 23 22 5 25 25 C 1.50703 * 119.92496 * 180.02562 * 24 23 22 26 26 O 1.42900 * 109.47058 * 244.98372 * 25 24 23 27 27 Si 1.86298 * 109.47130 * 4.98301 * 25 24 23 28 28 C 1.38239 * 120.14407 * 0.02562 * 24 23 22 29 29 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 34 34 H 1.09003 * 113.61277 * 203.66291 * 12 10 7 35 35 H 1.09005 * 113.61298 * 334.56474 * 12 10 7 36 36 H 1.08008 * 119.99993 * 359.97438 * 16 15 13 37 37 H 1.08000 * 120.00315 * 180.29617 * 17 16 15 38 38 H 1.08000 * 120.00606 * 179.77201 * 18 17 16 39 39 H 1.07999 * 119.99725 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.00138 * 359.97438 * 20 15 13 41 41 H 1.09000 * 113.61775 * 25.43603 * 21 10 7 42 42 H 1.09008 * 113.61087 * 156.25339 * 21 10 7 43 43 H 1.08001 * 120.00332 * 180.27284 * 22 5 4 44 44 H 1.07996 * 119.92771 * 179.70622 * 23 22 5 45 45 H 1.08991 * 109.46916 * 124.98223 * 25 24 23 46 46 H 0.96694 * 113.99828 * 180.02562 * 26 25 24 47 47 H 1.48500 * 109.99978 * 178.68332 * 27 25 24 48 48 H 1.48506 * 110.00035 * 300.00006 * 27 25 24 49 49 H 1.08004 * 119.99688 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 3.8881 2.8107 -0.0062 6 8 3.0624 3.8913 -0.0118 7 16 2.6858 4.3897 1.3761 8 8 1.6396 5.3223 1.1416 9 8 2.4558 3.2035 2.1239 10 6 4.1742 5.2390 1.9713 11 1 5.0796 4.6459 1.8432 12 6 4.3045 6.6838 1.4612 13 6 3.5005 7.1107 2.7006 14 1 2.4221 7.1120 2.5424 15 6 4.0017 8.3814 3.3370 16 6 5.3591 8.6353 3.3978 17 6 5.8186 9.8035 3.9768 18 6 4.9211 10.7127 4.5048 19 6 3.5639 10.4561 4.4491 20 6 3.1042 9.2906 3.8650 21 6 4.0218 5.8333 3.3814 22 6 5.2624 2.9871 -0.0010 23 6 6.1004 1.8875 -0.0015 24 6 5.5703 0.6106 -0.0015 25 6 6.4884 -0.5845 -0.0014 26 8 6.3267 -1.3094 -1.2223 27 14 8.2543 -0.0110 0.1511 28 6 4.2000 0.4278 -0.0015 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 5.3295 7.0545 1.4567 35 1 3.7843 6.8632 0.5202 36 1 6.0606 7.9227 2.9895 37 1 6.8789 10.0041 4.0200 38 1 5.2802 11.6236 4.9605 39 1 2.8627 11.1662 4.8620 40 1 2.0438 9.0904 3.8211 41 1 3.2735 5.3262 3.9905 42 1 4.9696 5.9702 3.9022 43 1 5.6790 3.9835 -0.0010 44 1 7.1714 2.0262 -0.0022 45 1 6.2424 -1.2315 0.8405 46 1 6.8880 -2.0937 -1.2912 47 1 9.1674 -1.1817 0.1843 48 1 8.6020 0.8721 -0.9911 49 1 3.7885 -0.5708 -0.0010 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79649_17781816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:51 Heat of formation + Delta-G solvation = -79.316495 kcal Electronic energy + Delta-G solvation = -35018.733788 eV Core-core repulsion = 30393.191336 eV Total energy + Delta-G solvation = -4625.542452 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.127 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.52115 -41.11848 -40.38475 -39.23151 -38.91344 -38.32766 -37.44830 -37.26787 -33.10276 -32.40785 -32.13674 -31.74832 -30.97568 -27.24334 -26.97668 -26.89895 -25.22556 -23.84380 -23.44080 -23.12484 -22.76007 -21.67969 -20.97102 -19.46258 -19.14510 -18.71678 -18.59941 -18.33010 -18.02529 -17.41973 -17.17590 -16.67630 -16.45049 -16.29135 -16.01702 -15.85818 -15.51496 -15.30431 -15.05210 -14.86139 -14.66514 -14.37424 -14.20007 -14.14968 -14.01788 -13.89574 -13.84747 -13.68940 -13.53064 -13.41551 -13.32787 -13.19600 -13.17974 -13.06249 -12.84304 -12.52544 -12.42841 -12.23663 -11.94099 -11.83335 -11.82466 -11.74398 -11.46536 -11.31009 -10.57999 -10.15535 -9.80053 -9.57848 -9.50547 -4.88781 -1.13572 -0.19052 0.07191 0.42605 0.51887 0.95146 1.27988 1.65487 1.93058 1.99255 2.18606 2.49045 2.69997 2.84132 3.01340 3.18900 3.22838 3.48372 3.54279 3.61057 3.72497 3.75386 3.91847 3.92959 3.98655 4.02265 4.05664 4.14321 4.17940 4.23090 4.26978 4.31662 4.37614 4.40694 4.50545 4.59902 4.63010 4.65350 4.69046 4.73911 4.77799 4.79142 4.80687 4.82668 4.92212 5.10812 5.11538 5.14715 5.15658 5.20202 5.42065 5.59677 5.66340 5.72570 6.09925 6.13750 6.56229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.042 3.958 3 O -0.329 6.329 4 C 0.139 3.861 5 C 0.001 3.999 6 O -0.658 6.658 7 S 2.593 3.407 8 O -0.966 6.966 9 O -0.971 6.971 10 C -0.636 4.636 11 H 0.187 0.813 12 C -0.088 4.088 13 C -0.105 4.105 14 H 0.097 0.903 15 C -0.078 4.078 16 C -0.120 4.120 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.085 4.085 22 C -0.078 4.078 23 C -0.136 4.136 24 C -0.019 4.019 25 C -0.097 4.097 26 O -0.557 6.557 27 Si 0.775 3.225 28 C -0.178 4.178 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.137 0.863 43 H 0.191 0.809 44 H 0.174 0.826 45 H 0.104 0.896 46 H 0.399 0.601 47 H -0.288 1.288 48 H -0.285 1.285 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.970 -2.554 3.057 9.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.032 4.032 3 O -0.242 6.242 4 C 0.090 3.910 5 C -0.041 4.041 6 O -0.617 6.617 7 S 2.692 3.308 8 O -0.964 6.964 9 O -0.970 6.970 10 C -0.746 4.746 11 H 0.204 0.796 12 C -0.126 4.126 13 C -0.124 4.124 14 H 0.115 0.885 15 C -0.078 4.078 16 C -0.137 4.137 17 C -0.142 4.142 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.124 4.124 22 C -0.097 4.097 23 C -0.153 4.153 24 C -0.020 4.020 25 C -0.205 4.205 26 O -0.367 6.367 27 Si 0.679 3.321 28 C -0.197 4.197 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.155 0.845 43 H 0.208 0.792 44 H 0.191 0.809 45 H 0.122 0.878 46 H 0.250 0.750 47 H -0.215 1.215 48 H -0.212 1.212 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.343 -2.107 2.383 8.929 hybrid contribution -0.591 -0.897 -0.708 1.286 sum 7.753 -3.004 1.676 8.481 Atomic orbital electron populations 1.21867 0.91814 1.04561 1.03023 1.23220 0.96962 0.80044 1.02997 1.86150 1.18331 1.32358 1.87374 1.19386 0.83915 0.93385 0.94337 1.17834 0.88982 0.80585 1.16749 1.85710 1.68925 1.50116 1.56943 1.05459 0.77435 0.74600 0.73306 1.93571 1.53925 1.65749 1.83172 1.93598 1.85316 1.45541 1.72498 1.32274 1.21682 1.10691 1.09954 0.79598 1.22859 1.04240 0.87904 0.97570 1.21973 1.00858 0.92737 0.96819 0.88521 1.19637 0.94099 0.95168 0.98884 1.21291 0.94702 0.98052 0.99677 1.21485 1.00784 0.94141 0.97829 1.21488 0.93414 1.00377 1.00004 1.21397 0.96544 0.97377 0.99520 1.21326 1.00093 0.94837 0.99167 1.22815 1.04997 0.93346 0.91201 1.21573 0.88141 1.03186 0.96803 1.21152 1.01375 0.90181 1.02615 1.19615 0.92860 0.94894 0.94600 1.25207 1.10469 0.94752 0.90029 1.86540 1.67456 1.44557 1.38182 0.94033 0.70565 0.80680 0.86844 1.21238 0.93600 0.98160 1.06681 0.92339 0.87400 0.92001 0.90145 0.90186 0.84322 0.90063 0.83264 0.83988 0.84769 0.85140 0.86042 0.90413 0.84542 0.79181 0.80882 0.87831 0.75016 1.21477 1.21178 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.31 10.28 71.98 0.74 0.43 16 2 C 0.04 0.15 5.46 71.98 0.39 0.54 16 3 O -0.33 -3.83 9.37 -72.55 -0.68 -4.51 16 4 C 0.14 1.20 5.93 22.57 0.13 1.34 16 5 C 0.00 0.01 4.81 22.57 0.11 0.11 16 6 O -0.66 -6.31 9.84 -60.45 -0.59 -6.91 16 7 S 2.59 23.07 5.00 -56.49 -0.28 22.79 16 8 O -0.97 -15.38 16.42 -118.57 -1.95 -17.33 16 9 O -0.97 -13.22 15.82 -117.14 -1.85 -15.08 16 10 C -0.64 1.73 4.18 31.12 0.13 1.86 16 11 H 0.19 -1.96 6.08 -2.39 -0.01 -1.97 16 12 C -0.09 0.28 6.87 31.12 0.21 0.50 16 13 C -0.11 -0.10 3.59 -10.99 -0.04 -0.14 16 14 H 0.10 0.49 6.97 -2.39 -0.02 0.47 16 15 C -0.08 -0.12 5.29 -19.87 -0.11 -0.22 16 16 C -0.12 0.23 8.60 22.27 0.19 0.42 16 17 C -0.12 0.16 10.05 22.27 0.22 0.38 16 18 C -0.13 -0.08 10.05 22.27 0.22 0.15 16 19 C -0.13 -0.30 10.05 22.27 0.22 -0.08 16 20 C -0.14 -0.49 9.71 22.27 0.22 -0.28 16 21 C -0.09 0.23 7.15 31.14 0.22 0.45 16 22 C -0.08 0.18 8.50 22.35 0.19 0.37 16 23 C -0.14 0.54 8.66 22.28 0.19 0.73 16 24 C -0.02 0.01 5.38 -19.86 -0.11 -0.09 16 25 C -0.10 0.47 2.79 71.24 0.20 0.67 16 26 O -0.56 0.98 12.81 -148.98 -1.91 -0.92 16 27 Si 0.78 -5.69 29.84 68.60 2.05 -3.64 16 28 C -0.18 -0.58 8.67 22.35 0.19 -0.38 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.08 0.05 7.66 -2.39 -0.02 0.03 16 33 H 0.08 0.02 7.66 -2.39 -0.02 0.00 16 34 H 0.14 -1.31 6.32 -2.39 -0.02 -1.33 16 35 H 0.08 -0.12 8.09 -2.38 -0.02 -0.14 16 36 H 0.15 -1.20 6.68 -2.91 -0.02 -1.22 16 37 H 0.14 -0.81 8.06 -2.91 -0.02 -0.83 16 38 H 0.13 -0.38 8.06 -2.91 -0.02 -0.40 16 39 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 40 H 0.12 0.34 8.06 -2.91 -0.02 0.31 16 41 H 0.08 -0.12 8.10 -2.39 -0.02 -0.14 16 42 H 0.14 -1.07 7.72 -2.38 -0.02 -1.09 16 43 H 0.19 -2.12 7.22 -2.91 -0.02 -2.14 16 44 H 0.17 -1.79 4.85 -2.91 -0.01 -1.80 16 45 H 0.10 -0.92 7.96 -2.39 -0.02 -0.94 16 46 H 0.40 -3.87 8.74 -74.06 -0.65 -4.52 16 47 H -0.29 0.67 7.11 99.48 0.71 1.38 16 48 H -0.28 0.43 7.05 99.48 0.70 1.13 16 49 H 0.15 0.02 6.30 -2.91 -0.02 0.00 16 Total: 0.00 -30.81 406.29 -1.30 -32.10 By element: Atomic # 1 Polarization: -13.65 SS G_CDS: 0.38 Total: -13.27 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 3.55 Total: 6.77 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -6.98 Total: -44.75 kcal Atomic # 14 Polarization: -5.69 SS G_CDS: 2.05 Total: -3.64 kcal Atomic # 16 Polarization: 23.07 SS G_CDS: -0.28 Total: 22.79 kcal Total: -30.81 -1.30 -32.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79649_17781816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.216 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds