Wall clock time and date at job start Mon Mar 8 2021 12:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00606 * 2 1 4 4 O 1.20827 * 119.99953 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00335 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.90625 * 48.74105 * 5 3 2 7 7 C 1.53783 * 113.61632 * 180.02562 * 5 3 2 8 8 C 1.53778 * 87.08010 * 139.97842 * 7 5 3 9 9 H 1.08998 * 113.61464 * 89.20227 * 8 7 5 10 10 S 1.81399 * 113.61126 * 220.01644 * 8 7 5 11 11 O 1.42098 * 110.54511 * 68.37831 * 10 8 7 12 12 O 1.42105 * 110.54376 * 291.62743 * 10 8 7 13 13 O 1.52202 * 104.44994 * 180.02562 * 10 8 7 14 14 C 1.35997 * 113.99918 * 75.00039 * 13 10 8 15 15 C 1.39154 * 120.07258 * 270.27595 * 14 13 10 16 16 O 1.35995 * 120.07211 * 359.97438 * 15 14 13 17 17 C 1.42901 * 116.99992 * 180.23119 * 16 15 14 18 18 C 1.38561 * 119.85717 * 180.23569 * 15 14 13 19 19 C 1.38248 * 119.99410 * 359.50932 * 18 15 14 20 20 C 1.38250 * 120.14921 * 0.23706 * 19 18 15 21 21 C 1.50695 * 119.92807 * 180.02562 * 20 19 18 22 22 O 1.42892 * 109.47282 * 245.00249 * 21 20 19 23 23 Si 1.86296 * 109.47113 * 5.00616 * 21 20 19 24 24 C 1.38245 * 120.14462 * 359.97438 * 20 19 18 25 25 C 1.53781 * 87.08439 * 334.56639 * 8 7 5 26 26 H 1.08997 * 109.47106 * 300.00723 * 1 2 3 27 27 H 1.09007 * 109.46762 * 59.99693 * 1 2 3 28 28 H 1.08995 * 109.47578 * 180.02562 * 1 2 3 29 29 H 1.08998 * 113.61568 * 25.42595 * 7 5 3 30 30 H 1.09001 * 113.68608 * 254.53698 * 7 5 3 31 31 H 1.09005 * 109.47089 * 60.00500 * 17 16 15 32 32 H 1.09007 * 109.47122 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47372 * 300.00062 * 17 16 15 34 34 H 1.08002 * 120.00640 * 179.79652 * 18 15 14 35 35 H 1.08001 * 119.92033 * 180.25430 * 19 18 15 36 36 H 1.09002 * 109.46892 * 124.99823 * 21 20 19 37 37 H 0.96704 * 114.00348 * 60.00418 * 22 21 20 38 38 H 1.48495 * 110.00458 * 58.67570 * 23 21 20 39 39 H 1.48500 * 110.00234 * 179.97438 * 23 21 20 40 40 H 1.07995 * 119.99714 * 180.02562 * 24 20 19 41 41 H 1.08996 * 113.61439 * 139.98096 * 25 8 7 42 42 H 1.08999 * 113.61060 * 270.88844 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0244 0.6358 -0.7557 7 6 4.1080 2.7140 0.0001 8 6 5.1816 2.2259 0.9870 9 1 6.0817 1.8488 0.5016 10 16 5.5401 3.4091 2.3144 11 8 4.4288 3.5256 3.1922 12 8 6.1860 4.5626 1.7932 13 8 6.6113 2.7263 3.1527 14 6 7.8454 2.7277 2.5813 15 6 8.2283 1.6826 1.7461 16 8 7.3694 0.6573 1.5000 17 6 7.8320 -0.3836 0.6370 18 6 9.4885 1.6861 1.1701 19 6 10.3586 2.7315 1.4176 20 6 9.9762 3.7725 2.2431 21 6 10.9284 4.9098 2.5090 22 8 11.2885 4.9163 3.8919 23 14 12.4594 4.6939 1.4697 24 6 8.7219 3.7729 2.8244 25 6 4.1918 1.1224 1.3961 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.4177 3.4400 0.4297 30 1 4.5109 3.0307 -0.9619 31 1 8.7216 -0.8436 1.0672 32 1 7.0515 -1.1362 0.5247 33 1 8.0755 0.0353 -0.3394 34 1 9.7893 0.8745 0.5242 35 1 11.3390 2.7351 0.9647 36 1 10.4468 5.8540 2.2545 37 1 11.7230 4.1051 4.1890 38 1 12.0949 4.6536 0.0307 39 1 13.4063 5.8096 1.7222 40 1 8.4256 4.5875 3.4686 41 1 4.6621 0.1530 1.5606 42 1 3.5244 1.4134 2.2073 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79710_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:16:41 Heat of formation + Delta-G solvation = -181.456048 kcal Electronic energy + Delta-G solvation = -31605.778708 eV Core-core repulsion = 27034.196428 eV Total energy + Delta-G solvation = -4571.582280 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.094 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.59984 -41.86839 -40.39390 -39.60257 -39.36695 -38.19627 -37.31301 -37.22745 -37.10310 -32.16720 -31.96786 -29.90141 -29.01704 -27.73473 -27.17925 -26.46771 -24.90419 -23.61867 -22.88227 -21.53334 -20.77594 -19.84428 -19.65311 -19.02447 -18.63363 -18.37674 -18.05074 -17.77079 -17.45017 -17.32532 -16.85555 -16.61223 -16.39556 -16.12505 -15.94516 -15.50332 -15.45197 -14.76793 -14.72177 -14.45302 -14.25242 -14.18284 -13.93998 -13.80154 -13.62413 -13.43793 -13.41850 -13.24535 -13.14718 -13.10175 -13.05536 -12.74013 -12.71802 -12.33878 -12.21213 -11.97039 -11.92551 -11.80311 -11.60046 -11.22104 -10.58691 -10.32007 -9.62800 -5.16255 -1.04285 -0.19419 -0.10889 0.95920 1.11956 1.18098 1.52238 1.65195 1.68095 1.89270 2.11806 2.52657 2.66965 2.88227 3.06982 3.15169 3.29987 3.32249 3.40672 3.51660 3.52556 3.78844 3.84605 3.85259 3.89012 3.95765 4.10369 4.15942 4.24153 4.24497 4.30165 4.30736 4.36691 4.39423 4.49570 4.56969 4.58131 4.60262 4.69343 4.77456 4.88069 5.04741 5.25621 5.34720 5.81003 6.48416 6.68678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.499 6.499 5 C -0.095 4.095 6 H 0.135 0.865 7 C -0.089 4.089 8 C -0.642 4.642 9 H 0.166 0.834 10 S 2.594 3.406 11 O -0.920 6.920 12 O -0.948 6.948 13 O -0.648 6.648 14 C 0.036 3.964 15 C 0.125 3.875 16 O -0.308 6.308 17 C 0.017 3.983 18 C -0.186 4.186 19 C -0.056 4.056 20 C -0.139 4.139 21 C -0.069 4.069 22 O -0.537 6.537 23 Si 0.690 3.310 24 C -0.024 4.024 25 C -0.085 4.085 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.380 0.620 38 H -0.254 1.254 39 H -0.251 1.251 40 H 0.152 0.848 41 H 0.106 0.894 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -8.559 -4.258 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.386 6.386 5 C -0.115 4.115 6 H 0.153 0.847 7 C -0.127 4.127 8 C -0.749 4.749 9 H 0.183 0.817 10 S 2.689 3.311 11 O -0.918 6.918 12 O -0.947 6.947 13 O -0.606 6.606 14 C -0.006 4.006 15 C 0.077 3.923 16 O -0.221 6.221 17 C -0.078 4.078 18 C -0.205 4.205 19 C -0.074 4.074 20 C -0.140 4.140 21 C -0.179 4.179 22 O -0.342 6.342 23 Si 0.591 3.409 24 C -0.044 4.044 25 C -0.123 4.123 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.227 0.773 38 H -0.179 1.179 39 H -0.176 1.176 40 H 0.169 0.831 41 H 0.124 0.876 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.520 -6.869 -4.242 9.780 hybrid contribution -0.897 -0.378 -0.532 1.110 sum 4.622 -7.247 -4.773 9.832 Atomic orbital electron populations 1.23352 0.75754 1.04081 1.02884 1.86499 1.23874 1.33076 1.83794 1.23502 0.91555 0.81629 0.72409 1.90709 1.66865 1.36396 1.44632 1.22422 0.87672 1.00069 1.01320 0.84674 1.22637 0.94248 0.95857 0.99994 1.32271 1.08268 1.15911 1.18409 0.81665 1.05659 0.74533 0.75322 0.75578 1.93661 1.51613 1.85246 1.61275 1.93648 1.72513 1.47234 1.81290 1.85749 1.27653 1.85310 1.61904 1.17286 0.84109 0.97414 1.01800 1.19114 0.90621 0.87864 0.94658 1.86195 1.39875 1.30853 1.65222 1.23317 1.02645 0.88823 0.92987 1.21140 0.92577 1.02027 1.04754 1.21059 0.99130 0.92037 0.95214 1.20221 0.95590 0.98071 1.00097 1.25120 1.04073 0.98592 0.90129 1.86549 1.81136 1.43254 1.23280 0.95003 0.78867 0.88498 0.78540 1.21066 0.91453 0.95727 0.96164 1.22568 0.95094 0.98818 0.95820 0.91572 0.91674 0.87758 0.87469 0.87902 0.91474 0.87145 0.91761 0.83135 0.83994 0.86195 0.77260 1.17914 1.17583 0.83081 0.87579 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.45 10.56 -39.24 -0.41 -0.87 16 3 C 0.47 0.97 7.48 36.01 0.27 1.24 16 4 O -0.50 -2.62 15.65 -18.75 -0.29 -2.91 16 5 C -0.09 0.10 4.26 -90.96 -0.39 -0.29 16 6 H 0.14 -0.53 8.14 -51.93 -0.42 -0.96 16 7 C -0.09 0.02 6.99 -25.92 -0.18 -0.16 16 8 C -0.64 0.26 3.27 -25.92 -0.08 0.18 16 9 H 0.17 -0.43 5.24 -51.93 -0.27 -0.70 16 10 S 2.59 9.16 5.14 -107.50 -0.55 8.61 16 11 O -0.92 -6.21 17.27 -67.03 -1.16 -7.37 16 12 O -0.95 -5.05 16.26 -67.04 -1.09 -6.14 16 13 O -0.65 -2.07 9.84 -54.23 -0.53 -2.61 16 14 C 0.04 0.07 4.81 -39.12 -0.19 -0.12 16 15 C 0.13 -0.11 5.91 -39.12 -0.23 -0.34 16 16 O -0.31 0.72 7.23 -34.23 -0.25 0.47 16 17 C 0.02 -0.10 9.81 101.05 0.99 0.89 16 18 C -0.19 0.57 9.04 -39.46 -0.36 0.22 16 19 C -0.06 0.16 8.66 -39.57 -0.34 -0.18 16 20 C -0.14 0.10 5.35 -104.62 -0.56 -0.46 16 21 C -0.07 0.07 2.80 36.00 0.10 0.17 16 22 O -0.54 0.30 12.83 -35.23 -0.45 -0.15 16 23 Si 0.69 -1.76 29.79 -169.99 -5.06 -6.82 16 24 C -0.02 -0.04 8.68 -39.46 -0.34 -0.38 16 25 C -0.08 0.08 7.19 -25.92 -0.19 -0.11 16 26 H 0.07 -0.01 8.13 -51.93 -0.42 -0.43 16 27 H 0.06 -0.03 8.13 -51.92 -0.42 -0.45 16 28 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.11 0.13 7.39 -51.93 -0.38 -0.25 16 30 H 0.10 -0.23 8.14 -51.93 -0.42 -0.66 16 31 H 0.07 -0.45 7.66 -51.93 -0.40 -0.84 16 32 H 0.11 -0.80 8.14 -51.93 -0.42 -1.23 16 33 H 0.06 -0.46 7.66 -51.93 -0.40 -0.86 16 34 H 0.15 -0.93 6.30 -52.49 -0.33 -1.26 16 35 H 0.14 -0.78 4.90 -52.49 -0.26 -1.04 16 36 H 0.12 -0.03 7.96 -51.93 -0.41 -0.45 16 37 H 0.38 -1.82 8.70 45.56 0.40 -1.42 16 38 H -0.25 0.14 7.11 56.52 0.40 0.54 16 39 H -0.25 -0.27 7.11 56.52 0.40 0.14 16 40 H 0.15 0.28 8.06 -52.49 -0.42 -0.15 16 41 H 0.11 -0.33 8.14 -51.93 -0.42 -0.76 16 42 H 0.11 0.05 7.38 -51.93 -0.38 -0.33 16 LS Contribution 361.83 15.07 5.45 5.45 Total: 0.00 -12.67 361.83 -9.80 -22.48 By element: Atomic # 1 Polarization: -6.83 SS G_CDS: -5.02 Total: -11.85 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.43 Total: 1.71 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -4.19 Total: -19.58 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: -5.06 Total: -6.82 kcal Atomic # 16 Polarization: 9.16 SS G_CDS: -0.55 Total: 8.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -12.67 -9.80 -22.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.980 kcal (2) G-P(sol) polarization free energy of solvation -12.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds