Wall clock time and date at job start Mon Mar 8 2021 13:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35987 * 117.00096 * 2 1 4 4 C 1.38525 * 120.07678 * 359.72668 * 3 2 1 5 5 C 1.38280 * 120.00242 * 179.74262 * 4 3 2 6 6 C 1.38209 * 120.14497 * 0.51192 * 5 4 3 7 7 C 1.50703 * 119.92798 * 179.74328 * 6 5 4 8 8 O 1.42905 * 109.47020 * 120.01975 * 7 6 5 9 9 Si 1.86296 * 109.47001 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47466 * 59.99784 * 9 7 6 11 11 H 1.48502 * 109.47359 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47282 * 299.99796 * 9 7 6 13 13 C 1.38285 * 120.14837 * 359.76168 * 6 5 4 14 14 C 1.38528 * 119.99975 * 359.97438 * 13 6 5 15 15 O 1.35988 * 120.07591 * 179.97438 * 14 13 6 16 16 S 1.52204 * 113.99479 * 270.01860 * 15 14 13 17 17 O 1.42102 * 104.27531 * 191.07161 * 16 15 14 18 18 O 1.42102 * 104.27891 * 318.92618 * 16 15 14 19 19 C 1.81403 * 104.45225 * 74.99942 * 16 15 14 20 20 C 1.52999 * 109.47122 * 179.97438 * 19 16 15 21 21 C 1.52995 * 109.46882 * 179.97438 * 20 19 16 22 22 Si 1.86296 * 109.47298 * 180.02562 * 21 20 19 23 23 C 1.86293 * 109.47420 * 59.99734 * 22 21 20 24 24 C 1.86298 * 109.47568 * 180.02562 * 22 21 20 25 25 C 1.86309 * 109.46832 * 299.99978 * 22 21 20 26 26 H 1.09001 * 109.47103 * 300.00410 * 1 2 3 27 27 H 1.09004 * 109.47054 * 59.99914 * 1 2 3 28 28 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99342 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.92837 * 180.22720 * 5 4 3 31 31 H 1.09002 * 109.47248 * 240.02291 * 7 6 5 32 32 H 0.96701 * 113.99950 * 300.00085 * 8 7 6 33 33 H 1.08002 * 120.00182 * 179.97438 * 13 6 5 34 34 H 1.09004 * 109.46796 * 299.99990 * 19 16 15 35 35 H 1.09009 * 109.46632 * 59.99539 * 19 16 15 36 36 H 1.09000 * 109.47114 * 299.99676 * 20 19 16 37 37 H 1.09001 * 109.46988 * 60.00024 * 20 19 16 38 38 H 1.09000 * 109.47381 * 300.00424 * 21 20 19 39 39 H 1.09001 * 109.47287 * 60.00210 * 21 20 19 40 40 H 1.09000 * 109.47317 * 60.00324 * 23 22 21 41 41 H 1.08999 * 109.47395 * 180.02562 * 23 22 21 42 42 H 1.09005 * 109.47368 * 300.00363 * 23 22 21 43 43 H 1.09001 * 109.47454 * 59.99581 * 24 22 21 44 44 H 1.09001 * 109.47586 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.46481 * 299.99793 * 24 22 21 46 46 H 1.08997 * 109.47147 * 59.99528 * 25 22 21 47 47 H 1.08999 * 109.47190 * 179.97438 * 25 22 21 48 48 H 1.09001 * 109.47080 * 299.99738 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2936 2.3744 -0.0057 5 6 1.9229 3.6057 -0.0003 6 6 3.3030 3.6797 0.0001 7 6 3.9839 5.0242 0.0001 8 8 4.8000 5.1448 1.1669 9 14 2.6974 6.3717 0.0003 10 1 1.8493 6.2463 1.2128 11 1 3.3682 7.6966 -0.0003 12 1 1.8491 6.2464 -1.2121 13 6 4.0606 2.5229 0.0001 14 6 3.4364 1.2862 0.0002 15 8 4.1799 0.1475 -0.0003 16 16 4.5180 -0.3702 -1.3911 17 8 5.0496 -1.6681 -1.1621 18 8 3.3197 -0.1899 -2.1331 19 6 5.8122 0.7513 -1.9895 20 6 6.2421 0.3296 -3.3960 21 6 7.3332 1.2759 -3.9009 22 14 7.8562 0.7630 -5.6137 23 6 6.3895 0.8386 -6.7598 24 6 9.1853 1.9148 -6.2283 25 6 8.5177 -0.9781 -5.5658 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2150 2.3192 -0.0106 30 1 1.3348 4.5115 -0.0011 31 1 4.6064 5.1163 -0.8899 32 1 4.3111 5.0725 1.9981 33 1 5.1389 2.5835 0.0000 34 1 5.4256 1.7701 -2.0174 35 1 6.6703 0.7065 -1.3187 36 1 6.6289 -0.6891 -3.3675 37 1 5.3842 0.3740 -4.0668 38 1 6.9461 2.2945 -3.9293 39 1 8.1913 1.2319 -3.2301 40 1 6.0025 1.8572 -6.7879 41 1 6.6954 0.5381 -7.7619 42 1 5.6121 0.1644 -6.4001 43 1 10.0435 1.8701 -5.5577 44 1 9.4910 1.6149 -7.2307 45 1 8.7986 2.9335 -6.2563 46 1 7.7404 -1.6522 -5.2060 47 1 8.8233 -1.2784 -6.5680 48 1 9.3759 -1.0223 -4.8953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79710_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:46:47 Heat of formation + Delta-G solvation = -193.770882 kcal Electronic energy + Delta-G solvation = -29673.820871 eV Core-core repulsion = 25559.776904 eV Total energy + Delta-G solvation = -4114.043967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.47666 -40.21334 -39.36804 -38.09482 -37.24985 -36.98083 -35.94356 -32.10894 -31.95379 -29.74003 -28.89185 -28.49012 -28.43204 -28.28483 -26.41887 -24.90509 -23.11311 -22.90900 -21.30990 -19.67342 -19.13717 -18.78709 -18.54979 -18.07042 -17.27410 -16.85013 -16.73769 -16.35073 -16.18861 -16.00114 -15.55860 -15.41367 -15.06885 -14.86252 -14.36868 -14.26007 -14.16554 -14.08879 -14.07421 -13.68748 -13.65883 -13.57084 -13.33158 -13.27933 -13.18578 -13.17178 -13.11180 -13.06674 -13.02863 -12.94375 -12.57345 -12.42620 -12.26317 -12.22925 -11.97402 -11.82568 -11.76807 -10.85433 -10.82058 -10.65570 -10.57109 -10.31707 -9.46058 -0.98536 -0.14517 -0.05591 0.94537 1.13661 1.28666 1.35364 1.71463 1.77079 1.82912 1.84096 1.97673 2.16690 2.56768 2.70959 3.00913 3.22763 3.34979 3.39517 3.49799 3.58696 3.65053 3.82617 3.89753 4.02595 4.06860 4.13796 4.19297 4.29509 4.36259 4.48906 4.53219 4.63174 4.64875 4.69422 4.70342 4.72638 4.74037 4.74646 4.76236 4.77919 4.85466 4.91614 5.00864 5.25368 5.29665 5.45056 5.53025 5.55396 6.06233 6.38009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.297 6.297 3 C 0.169 3.831 4 C -0.189 4.189 5 C -0.063 4.063 6 C -0.145 4.145 7 C -0.078 4.078 8 O -0.537 6.537 9 Si 0.946 3.054 10 H -0.248 1.248 11 H -0.250 1.250 12 H -0.247 1.247 13 C -0.063 4.063 14 C 0.031 3.969 15 O -0.651 6.651 16 S 2.582 3.418 17 O -0.926 6.926 18 O -0.943 6.943 19 C -0.651 4.651 20 C -0.101 4.101 21 C -0.406 4.406 22 Si 1.002 2.998 23 C -0.453 4.453 24 C -0.449 4.449 25 C -0.454 4.454 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.379 0.621 33 H 0.154 0.846 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 5.433 -0.360 5.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.209 6.209 3 C 0.120 3.880 4 C -0.208 4.208 5 C -0.082 4.082 6 C -0.146 4.146 7 C -0.188 4.188 8 O -0.342 6.342 9 Si 0.768 3.232 10 H -0.172 1.172 11 H -0.173 1.173 12 H -0.171 1.171 13 C -0.083 4.083 14 C -0.012 4.012 15 O -0.609 6.609 16 S 2.678 3.322 17 O -0.924 6.924 18 O -0.941 6.941 19 C -0.778 4.778 20 C -0.139 4.139 21 C -0.491 4.491 22 Si 1.198 2.802 23 C -0.560 4.560 24 C -0.556 4.556 25 C -0.561 4.561 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.226 0.774 33 H 0.171 0.829 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.468 5.280 -0.576 5.857 hybrid contribution 0.212 -0.048 0.345 0.408 sum -2.256 5.233 -0.231 5.703 Atomic orbital electron populations 1.23281 0.76952 1.05204 1.01875 1.86203 1.22574 1.25305 1.86789 1.19079 0.90451 0.85994 0.92521 1.21189 1.01048 0.90860 1.07694 1.21076 0.93880 0.97845 0.95397 1.20081 0.93287 0.95739 1.05517 1.24969 1.02987 0.98539 0.92323 1.86531 1.36955 1.95406 1.15337 0.85722 0.77192 0.78257 0.81987 1.17188 1.17317 1.17089 1.21043 1.01524 0.88913 0.96804 1.17280 0.86345 0.82486 1.15042 1.85760 1.71776 1.46004 1.57398 1.05953 0.76435 0.76205 0.73587 1.93648 1.81317 1.34887 1.82520 1.93645 1.42285 1.86265 1.71949 1.30970 1.19758 1.17857 1.09201 1.20961 1.00521 1.00850 0.91574 1.26164 1.01870 1.03103 1.17999 0.79331 0.67266 0.67328 0.66235 1.26172 1.14562 1.04566 1.10734 1.26101 1.12670 1.10589 1.06272 1.26179 1.06666 1.18662 1.04604 0.91963 0.91680 0.87310 0.83289 0.84702 0.85954 0.77362 0.82883 0.84703 0.84256 0.89976 0.89973 0.90034 0.89978 0.91176 0.91131 0.91115 0.91236 0.91173 0.91265 0.91100 0.91133 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 101.05 0.99 0.97 16 2 O -0.30 -0.99 9.73 -41.48 -0.40 -1.39 16 3 C 0.17 0.41 5.93 -39.12 -0.23 0.18 16 4 C -0.19 0.10 9.04 -39.46 -0.36 -0.26 16 5 C -0.06 0.10 8.66 -39.58 -0.34 -0.25 16 6 C -0.15 0.19 5.39 -104.61 -0.56 -0.37 16 7 C -0.08 0.20 2.82 36.01 0.10 0.30 16 8 O -0.54 0.94 12.77 -35.23 -0.45 0.49 16 9 Si 0.95 -2.47 25.06 -169.99 -4.26 -6.73 16 10 H -0.25 0.64 7.11 56.52 0.40 1.04 16 11 H -0.25 0.22 7.11 56.52 0.40 0.62 16 12 H -0.25 0.56 7.11 56.52 0.40 0.96 16 13 C -0.06 0.01 8.02 -39.46 -0.32 -0.30 16 14 C 0.03 0.08 4.81 -39.12 -0.19 -0.11 16 15 O -0.65 -2.38 9.84 -54.20 -0.53 -2.91 16 16 S 2.58 8.83 5.17 -107.50 -0.56 8.27 16 17 O -0.93 -6.33 18.09 -67.04 -1.21 -7.54 16 18 O -0.94 -4.94 15.82 -68.53 -1.08 -6.02 16 19 C -0.65 0.53 5.46 37.16 0.20 0.73 16 20 C -0.10 0.08 4.59 -26.73 -0.12 -0.04 16 21 C -0.41 0.90 4.45 37.16 0.17 1.06 16 22 Si 1.00 -2.69 12.19 -169.99 -2.07 -4.76 16 23 C -0.45 0.64 8.65 101.05 0.87 1.51 16 24 C -0.45 0.75 8.65 101.05 0.87 1.62 16 25 C -0.45 0.53 8.65 101.05 0.87 1.41 16 26 H 0.06 -0.20 7.68 -51.93 -0.40 -0.59 16 27 H 0.06 -0.15 7.65 -51.93 -0.40 -0.55 16 28 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 29 H 0.15 -0.47 6.30 -52.49 -0.33 -0.80 16 30 H 0.14 -0.47 4.87 -52.49 -0.26 -0.73 16 31 H 0.12 -0.46 7.96 -51.93 -0.41 -0.88 16 32 H 0.38 -1.81 8.70 45.56 0.40 -1.41 16 33 H 0.15 -0.36 7.49 -52.49 -0.39 -0.75 16 34 H 0.13 -0.38 6.60 -51.92 -0.34 -0.72 16 35 H 0.14 -0.37 8.14 -51.92 -0.42 -0.79 16 36 H 0.08 -0.11 7.79 -51.93 -0.40 -0.51 16 37 H 0.08 -0.13 7.79 -51.93 -0.40 -0.54 16 38 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 39 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 40 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 41 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 42 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 43 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 45 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 46 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 47 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 48 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 LS Contribution 401.29 15.07 6.05 6.05 Total: 0.00 -10.59 401.29 -9.68 -20.27 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: -7.12 Total: -12.17 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 1.96 Total: 6.45 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -3.68 Total: -17.38 kcal Atomic # 14 Polarization: -5.16 SS G_CDS: -6.33 Total: -11.49 kcal Atomic # 16 Polarization: 8.83 SS G_CDS: -0.56 Total: 8.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -10.59 -9.68 -20.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.499 kcal (2) G-P(sol) polarization free energy of solvation -10.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds