Wall clock time and date at job start Mon Mar 8 2021 11:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36004 * 116.99908 * 2 1 4 4 C 1.39151 * 120.07010 * 179.97438 * 3 2 1 5 5 O 1.35999 * 120.07663 * 359.69755 * 4 3 2 6 6 S 1.52197 * 113.99644 * 89.99850 * 5 4 3 7 7 O 1.42100 * 104.27649 * 191.07340 * 6 5 4 8 8 O 1.42099 * 104.28430 * 318.93213 * 6 5 4 9 9 C 1.81406 * 104.44931 * 75.00157 * 6 5 4 10 10 C 1.52995 * 109.47447 * 179.97438 * 9 6 5 11 11 H 1.09005 * 112.84741 * 43.80290 * 10 9 6 12 12 C 1.53781 * 113.61844 * 175.00304 * 10 9 6 13 13 C 1.53779 * 87.08310 * 89.11676 * 12 10 9 14 14 O 1.42894 * 113.61444 * 270.88824 * 13 12 10 15 15 C 1.42898 * 114.00151 * 294.69731 * 14 13 12 16 16 C 1.52998 * 113.61421 * 140.06623 * 13 12 10 17 17 F 1.39895 * 109.47175 * 54.77978 * 16 13 12 18 18 F 1.39899 * 109.46978 * 174.77914 * 16 13 12 19 19 F 1.39904 * 109.47038 * 294.78096 * 16 13 12 20 20 C 1.53780 * 113.61870 * 272.50379 * 10 9 6 21 21 C 1.38563 * 119.85248 * 179.72042 * 4 3 2 22 22 C 1.38244 * 120.00086 * 0.02562 * 21 4 3 23 23 C 1.50700 * 119.92850 * 179.97438 * 22 21 4 24 24 O 1.42899 * 109.47226 * 299.99818 * 23 22 21 25 25 Si 1.86303 * 109.47116 * 179.97438 * 23 22 21 26 26 C 1.38251 * 120.14486 * 0.02562 * 22 21 4 27 27 C 1.38249 * 120.14803 * 359.95818 * 26 22 21 28 28 H 1.09001 * 109.47574 * 300.00394 * 1 2 3 29 29 H 1.09007 * 109.47104 * 60.00471 * 1 2 3 30 30 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47410 * 300.00119 * 9 6 5 32 32 H 1.09004 * 109.46604 * 59.99859 * 9 6 5 33 33 H 1.08995 * 113.61384 * 203.67303 * 12 10 9 34 34 H 1.08996 * 113.60786 * 334.56687 * 12 10 9 35 35 H 1.09007 * 109.46433 * 56.94244 * 15 14 13 36 36 H 1.08997 * 109.47516 * 176.93700 * 15 14 13 37 37 H 1.08998 * 109.47525 * 296.94475 * 15 14 13 38 38 H 1.09003 * 113.61704 * 25.42835 * 20 10 9 39 39 H 1.09000 * 113.61994 * 156.33340 * 20 10 9 40 40 H 1.08004 * 120.00419 * 179.97438 * 21 4 3 41 41 H 1.08999 * 109.47005 * 60.00186 * 23 22 21 42 42 H 0.96699 * 114.00131 * 179.97438 * 24 23 22 43 43 H 1.48508 * 109.99953 * 298.68319 * 25 23 22 44 44 H 1.48499 * 109.99920 * 60.00052 * 25 23 22 45 45 H 1.08000 * 119.93074 * 179.97438 * 26 22 21 46 46 H 1.07993 * 119.99938 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1477 0.0073 6 16 4.5189 -0.3781 -1.3801 7 8 5.0503 -1.6746 -1.1431 8 8 3.3213 -0.2022 -2.1243 9 6 5.8135 0.7400 -1.9838 10 6 6.2449 0.3103 -3.3873 11 1 5.4017 0.0591 -4.0309 12 6 7.2554 1.2673 -4.0414 13 6 8.3606 0.4229 -3.3854 14 8 8.7160 0.8646 -2.0737 15 6 9.3152 2.1615 -2.0396 16 6 9.5765 0.1982 -4.2865 17 9 10.0687 1.4331 -4.7221 18 9 10.5716 -0.4733 -3.5680 19 9 9.2009 -0.5708 -5.3932 20 6 7.3620 -0.7466 -3.3921 21 6 4.0602 2.5233 -0.0053 22 6 3.3029 3.6799 -0.0112 23 6 3.9837 5.0244 -0.0170 24 8 4.7990 5.1505 1.1498 25 14 2.6971 6.3718 -0.0248 26 6 1.9224 3.6058 -0.0106 27 6 1.2931 2.3748 -0.0051 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 5.4270 1.7586 -2.0180 32 1 6.6710 0.6991 -1.3120 33 1 7.2588 1.2211 -5.1304 34 1 7.2007 2.2870 -3.6602 35 1 8.6410 2.8853 -2.4977 36 1 9.5057 2.4467 -1.0050 37 1 10.2557 2.1419 -2.5903 38 1 7.3934 -1.3528 -2.4867 39 1 7.3946 -1.3435 -4.3035 40 1 5.1386 2.5841 -0.0045 41 1 4.6067 5.1123 -0.9070 42 1 5.2688 5.9934 1.2121 43 1 1.8632 6.2707 -1.2495 44 1 1.8405 6.2632 1.1834 45 1 1.3341 4.5115 -0.0148 46 1 0.2146 2.3197 -0.0051 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79710_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:38:15 Heat of formation + Delta-G solvation = -291.185982 kcal Electronic energy + Delta-G solvation = -40648.045731 eV Core-core repulsion = 34799.176372 eV Total energy + Delta-G solvation = -5848.869359 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.098 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -51.26291 -48.79505 -48.73291 -42.59992 -41.47636 -40.34559 -39.25052 -38.43822 -37.40120 -37.29157 -37.13325 -32.29774 -32.11558 -31.66714 -28.81783 -28.36033 -27.85604 -26.80931 -26.27877 -25.01549 -23.63283 -23.05125 -21.59388 -20.69731 -20.00459 -19.68382 -19.56628 -19.28882 -19.24861 -18.77945 -18.57319 -18.24653 -17.55835 -17.26151 -16.86309 -16.57946 -16.49234 -16.40240 -15.84675 -15.78283 -15.67942 -15.60251 -15.52764 -15.33962 -15.30387 -15.15306 -14.91658 -14.87553 -14.69370 -14.39762 -14.36060 -14.21701 -13.96542 -13.92015 -13.50651 -13.48017 -13.29955 -13.27431 -13.16383 -13.04870 -12.92373 -12.52290 -12.40434 -12.32320 -12.21934 -12.20650 -12.12015 -11.90474 -11.45495 -10.82750 -10.40763 -10.29643 -9.50947 -4.88630 -1.18730 -0.25384 -0.10615 0.89366 1.34005 1.51239 1.70297 1.95838 2.00935 2.07465 2.09343 2.42645 2.53815 2.59761 2.80929 2.83793 3.09497 3.24646 3.26531 3.29519 3.40287 3.41359 3.49872 3.61797 3.81989 3.90073 4.05094 4.14907 4.17149 4.24907 4.26723 4.28899 4.35320 4.40006 4.42550 4.46518 4.53690 4.56573 4.64507 4.66120 4.67027 4.74393 4.78877 4.84349 4.88687 5.00655 5.27632 5.72021 6.00504 6.96582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.328 6.328 3 C 0.142 3.858 4 C 0.005 3.995 5 O -0.661 6.661 6 S 2.583 3.417 7 O -0.966 6.966 8 O -0.968 6.968 9 C -0.620 4.620 10 C -0.097 4.097 11 H 0.122 0.878 12 C -0.124 4.124 13 C 0.039 3.961 14 O -0.347 6.347 15 C 0.000 4.000 16 C 0.433 3.567 17 F -0.181 7.181 18 F -0.188 7.188 19 F -0.177 7.177 20 C -0.141 4.141 21 C -0.060 4.060 22 C -0.105 4.105 23 C -0.072 4.072 24 O -0.563 6.563 25 Si 0.763 3.237 26 C -0.071 4.071 27 C -0.188 4.188 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.179 0.821 41 H 0.113 0.887 42 H 0.406 0.594 43 H -0.280 1.280 44 H -0.297 1.297 45 H 0.143 0.857 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 11.946 -1.581 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.241 6.241 3 C 0.093 3.907 4 C -0.037 4.037 5 O -0.620 6.620 6 S 2.683 3.317 7 O -0.964 6.964 8 O -0.966 6.966 9 C -0.750 4.750 10 C -0.116 4.116 11 H 0.140 0.860 12 C -0.162 4.162 13 C -0.004 4.004 14 O -0.265 6.265 15 C -0.095 4.095 16 C 0.378 3.622 17 F -0.162 7.162 18 F -0.170 7.170 19 F -0.158 7.158 20 C -0.178 4.178 21 C -0.080 4.080 22 C -0.106 4.106 23 C -0.182 4.182 24 O -0.373 6.373 25 Si 0.669 3.331 26 C -0.089 4.089 27 C -0.207 4.207 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.191 0.809 32 H 0.183 0.817 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.152 0.848 40 H 0.196 0.804 41 H 0.131 0.869 42 H 0.258 0.742 43 H -0.207 1.207 44 H -0.224 1.224 45 H 0.160 0.840 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.957 10.540 -1.101 11.002 hybrid contribution 0.801 -0.650 -0.280 1.069 sum -2.155 9.890 -1.380 10.216 Atomic orbital electron populations 1.23562 0.75277 1.06330 1.03233 1.86156 1.24605 1.26120 1.87220 1.19405 0.91007 0.86433 0.93874 1.17727 0.86642 0.82878 1.16458 1.85724 1.72074 1.46744 1.57424 1.05759 0.76590 0.76107 0.73263 1.93588 1.81806 1.37980 1.83028 1.93606 1.44087 1.86597 1.72358 1.30674 1.18965 1.17894 1.07474 1.21811 0.99082 0.97621 0.93135 0.85974 1.23650 0.89763 1.00118 1.02644 1.24045 0.88739 1.02201 0.85392 1.88052 1.80024 1.36289 1.22104 1.23367 0.97640 0.83019 1.05441 1.21466 0.86088 0.74087 0.80509 1.93185 1.89430 1.42953 1.90635 1.93192 1.64838 1.81028 1.77925 1.93174 1.91108 1.76025 1.55503 1.23644 0.91695 0.95524 1.06930 1.21298 1.02749 0.87886 0.96061 1.19517 0.92755 0.94975 1.03362 1.24722 1.02838 0.98131 0.92516 1.86454 1.64489 1.44420 1.41975 0.94196 0.77594 0.84584 0.76743 1.21179 0.94416 0.97659 0.95661 1.21419 1.02150 0.90199 1.06905 0.90314 0.90591 0.86420 0.80919 0.81694 0.85466 0.86078 0.90256 0.86633 0.93827 0.88728 0.84769 0.80380 0.86892 0.74177 1.20660 1.22421 0.84032 0.81172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.33 -3.16 9.71 -72.56 -0.70 -3.86 16 3 C 0.14 1.09 5.94 22.57 0.13 1.22 16 4 C 0.01 0.04 4.81 22.57 0.11 0.14 16 5 O -0.66 -6.29 9.84 -60.56 -0.60 -6.89 16 6 S 2.58 20.09 5.16 -56.49 -0.29 19.79 16 7 O -0.97 -14.84 18.09 -118.57 -2.15 -16.99 16 8 O -0.97 -11.22 15.80 -117.09 -1.85 -13.07 16 9 C -0.62 2.01 5.05 71.98 0.36 2.37 16 10 C -0.10 0.38 3.84 -10.27 -0.04 0.34 16 11 H 0.12 -0.76 8.13 -2.38 -0.02 -0.77 16 12 C -0.12 0.89 6.51 31.12 0.20 1.10 16 13 C 0.04 -0.05 0.85 -10.27 -0.01 -0.06 16 14 O -0.35 0.26 8.35 -148.98 -1.24 -0.99 16 15 C 0.00 0.00 10.33 113.37 1.17 1.17 16 16 C 0.43 0.90 2.51 71.98 0.18 1.08 16 17 F -0.18 -0.26 15.37 44.97 0.69 0.44 16 18 F -0.19 -1.26 17.09 44.97 0.77 -0.49 16 19 F -0.18 -0.42 15.83 44.97 0.71 0.29 16 20 C -0.14 0.09 6.89 31.12 0.21 0.30 16 21 C -0.06 -0.02 8.02 22.35 0.18 0.16 16 22 C -0.11 0.11 5.42 -19.86 -0.11 0.00 16 23 C -0.07 0.56 2.81 71.24 0.20 0.76 16 24 O -0.56 3.95 12.74 -148.98 -1.90 2.05 16 25 Si 0.76 -6.03 29.78 68.60 2.04 -3.99 16 26 C -0.07 -0.02 8.66 22.28 0.19 0.18 16 27 C -0.19 -0.35 9.04 22.35 0.20 -0.14 16 28 H 0.08 -0.34 7.67 -2.39 -0.02 -0.36 16 29 H 0.08 -0.24 7.66 -2.38 -0.02 -0.26 16 30 H 0.12 -0.34 8.14 -2.39 -0.02 -0.35 16 31 H 0.17 -1.72 6.60 -2.39 -0.02 -1.74 16 32 H 0.17 -0.73 6.12 -2.39 -0.01 -0.74 16 33 H 0.13 -1.22 8.06 -2.39 -0.02 -1.23 16 34 H 0.12 -1.42 6.64 -2.39 -0.02 -1.44 16 35 H 0.08 -0.85 6.60 -2.38 -0.02 -0.87 16 36 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H 0.04 -0.15 6.59 -2.39 -0.02 -0.17 16 38 H 0.09 0.23 8.10 -2.39 -0.02 0.21 16 39 H 0.13 -0.42 7.01 -2.39 -0.02 -0.44 16 40 H 0.18 -1.09 7.50 -2.91 -0.02 -1.12 16 41 H 0.11 -1.60 7.96 -2.39 -0.02 -1.62 16 42 H 0.41 -6.98 8.74 -74.06 -0.65 -7.63 16 43 H -0.28 0.90 7.11 99.48 0.71 1.60 16 44 H -0.30 -0.05 7.11 99.48 0.71 0.66 16 45 H 0.14 -0.35 4.87 -2.91 -0.01 -0.36 16 46 H 0.17 -0.67 6.30 -2.91 -0.02 -0.69 16 Total: 0.00 -32.35 393.32 0.06 -32.29 By element: Atomic # 1 Polarization: -18.80 SS G_CDS: 0.47 Total: -18.34 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 4.11 Total: 9.74 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -8.44 Total: -39.74 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 2.17 Total: 0.24 kcal Atomic # 14 Polarization: -6.03 SS G_CDS: 2.04 Total: -3.99 kcal Atomic # 16 Polarization: 20.09 SS G_CDS: -0.29 Total: 19.79 kcal Total: -32.35 0.06 -32.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -258.896 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -291.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds