Wall clock time and date at job start Mon Mar 8 2021 11:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35999 * 116.99898 * 2 1 4 4 C 1.39150 * 120.07375 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07351 * 0.05168 * 4 3 2 6 6 S 1.52200 * 114.00315 * 94.27667 * 5 4 3 7 7 O 1.42105 * 104.27562 * 191.05900 * 6 5 4 8 8 O 1.42098 * 104.27693 * 318.92011 * 6 5 4 9 9 C 1.81398 * 104.44858 * 74.99309 * 6 5 4 10 10 H 1.09006 * 112.85000 * 286.48050 * 9 6 5 11 11 C 1.53777 * 113.61701 * 57.67196 * 9 6 5 12 12 C 1.53784 * 87.08014 * 89.12082 * 11 9 6 13 13 H 1.09001 * 113.60945 * 270.80082 * 12 11 9 14 14 C 1.50703 * 113.61748 * 139.98397 * 12 11 9 15 15 C 1.38234 * 119.99719 * 299.72763 * 14 12 11 16 16 C 1.38236 * 119.99893 * 179.76593 * 15 14 12 17 17 C 1.38231 * 119.99940 * 0.48508 * 16 15 14 18 18 C 1.38237 * 120.00201 * 359.78875 * 17 16 15 19 19 C 1.38234 * 120.00120 * 119.99646 * 14 12 11 20 20 C 1.53775 * 113.61790 * 155.28481 * 9 6 5 21 21 C 1.38568 * 119.85299 * 180.02562 * 4 3 2 22 22 C 1.38238 * 119.99997 * 0.02562 * 21 4 3 23 23 C 1.50702 * 119.92580 * 180.02562 * 22 21 4 24 24 O 1.42894 * 109.47184 * 299.99605 * 23 22 21 25 25 Si 1.86304 * 109.47055 * 179.97438 * 23 22 21 26 26 C 1.38254 * 120.14496 * 359.97438 * 22 21 4 27 27 C 1.38236 * 120.15039 * 0.02562 * 26 22 21 28 28 H 1.08999 * 109.46742 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47443 * 299.99532 * 1 2 3 30 30 H 1.08999 * 109.46964 * 60.00090 * 1 2 3 31 31 H 1.08999 * 113.61983 * 203.66458 * 11 9 6 32 32 H 1.09000 * 113.61989 * 334.57378 * 11 9 6 33 33 H 1.08004 * 119.99995 * 359.97438 * 15 14 12 34 34 H 1.08002 * 119.99900 * 180.24342 * 16 15 14 35 35 H 1.07995 * 120.00067 * 179.76434 * 17 16 15 36 36 H 1.07992 * 120.00440 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.99600 * 0.02562 * 19 14 12 38 38 H 1.09006 * 113.61348 * 25.42844 * 20 9 6 39 39 H 1.08999 * 113.61900 * 156.33596 * 20 9 6 40 40 H 1.07999 * 119.99560 * 179.97438 * 21 4 3 41 41 H 1.09001 * 109.47083 * 60.00111 * 23 22 21 42 42 H 0.96702 * 114.00106 * 180.02562 * 24 23 22 43 43 H 1.48507 * 109.99836 * 59.99786 * 25 23 22 44 44 H 1.48496 * 109.99953 * 181.32019 * 25 23 22 45 45 H 1.07999 * 119.92231 * 180.02562 * 26 22 21 46 46 H 1.07999 * 120.00424 * 180.27800 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1478 0.0000 6 16 4.6053 -0.3129 -1.3867 7 8 5.1235 -1.6196 -1.1780 8 8 3.4559 -0.1009 -2.1947 9 6 5.9330 0.8308 -1.8557 10 1 5.5649 1.8243 -2.1119 11 6 7.1107 0.8462 -0.8671 12 6 7.7235 -0.2912 -1.7011 13 1 7.4164 -1.2853 -1.3760 14 6 9.2144 -0.1700 -1.8842 15 6 9.7453 0.9395 -2.5149 16 6 11.1133 1.0530 -2.6786 17 6 11.9496 0.0523 -2.2204 18 6 11.4183 -1.0600 -1.5947 19 6 10.0507 -1.1710 -1.4264 20 6 6.9093 0.2496 -2.8918 21 6 4.0602 2.5235 0.0011 22 6 3.3028 3.6799 0.0016 23 6 3.9835 5.0244 0.0016 24 8 4.8000 5.1450 1.1681 25 14 2.6969 6.3719 0.0016 26 6 1.9223 3.6057 0.0011 27 6 1.2931 2.3748 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 7.6910 1.7685 -0.8935 32 1 6.8358 0.5468 0.1443 33 1 9.0916 1.7194 -2.8769 34 1 11.5284 1.9218 -3.1679 35 1 13.0180 0.1391 -2.3517 36 1 12.0715 -1.8421 -1.2372 37 1 9.6354 -2.0401 -0.9378 38 1 6.4719 -0.5313 -3.5141 39 1 7.4347 1.0090 -3.4709 40 1 5.1385 2.5841 0.0019 41 1 4.6057 5.1167 -0.8886 42 1 5.2692 5.9879 1.2344 43 1 1.8415 6.2573 1.2101 44 1 3.3551 7.7026 -0.0306 45 1 1.3341 4.5115 0.0011 46 1 0.2145 2.3196 -0.0044 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79710_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:48:50 Heat of formation + Delta-G solvation = -74.675663 kcal Electronic energy + Delta-G solvation = -33248.992814 eV Core-core repulsion = 28779.189223 eV Total energy + Delta-G solvation = -4469.803591 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.111 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.43766 -41.15830 -40.19544 -39.27329 -38.95184 -38.02263 -37.40658 -37.02041 -32.32935 -32.15391 -31.88919 -31.77672 -28.82926 -27.14256 -26.97940 -26.34699 -24.78044 -23.78273 -23.03579 -22.86806 -21.43944 -20.78379 -19.49440 -19.02396 -18.76129 -18.63862 -18.32228 -18.05280 -17.46021 -16.75719 -16.61759 -16.51536 -16.27393 -15.90951 -15.86159 -15.57509 -15.38458 -15.21035 -14.95713 -14.46227 -14.24442 -14.23421 -14.13889 -14.04999 -13.79162 -13.72580 -13.36659 -13.31194 -13.26395 -13.13739 -13.08447 -12.97438 -12.58158 -12.50537 -12.43583 -12.16888 -11.99487 -11.88876 -11.85289 -11.50574 -11.30401 -10.70822 -10.27839 -9.81825 -9.59708 -9.41862 -5.11633 -0.98421 -0.10742 -0.01398 0.40886 0.50288 1.03067 1.14483 1.45318 1.81512 2.00250 2.17678 2.56932 2.78952 2.85567 2.99477 3.08232 3.25182 3.43582 3.51280 3.54126 3.59751 3.68602 3.88330 3.94249 3.97541 4.07372 4.10754 4.11111 4.16020 4.16489 4.23775 4.28395 4.36669 4.42366 4.44315 4.51560 4.57938 4.60175 4.63707 4.66529 4.74770 4.78260 4.89291 5.06416 5.08987 5.09313 5.17709 5.32699 5.56821 5.63925 5.71744 6.09174 6.09605 6.26939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.299 6.299 3 C 0.168 3.832 4 C 0.033 3.967 5 O -0.646 6.646 6 S 2.607 3.393 7 O -0.920 6.920 8 O -0.942 6.942 9 C -0.664 4.664 10 H 0.149 0.851 11 C -0.090 4.090 12 C -0.092 4.092 13 H 0.124 0.876 14 C -0.071 4.071 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.087 4.087 21 C -0.066 4.066 22 C -0.096 4.096 23 C -0.073 4.073 24 O -0.535 6.535 25 Si 0.682 3.318 26 C -0.053 4.053 27 C -0.188 4.188 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.383 0.617 43 H -0.251 1.251 44 H -0.257 1.257 45 H 0.143 0.857 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 6.069 -2.024 6.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.211 6.211 3 C 0.118 3.882 4 C -0.009 4.009 5 O -0.605 6.605 6 S 2.700 3.300 7 O -0.918 6.918 8 O -0.941 6.941 9 C -0.770 4.770 10 H 0.167 0.833 11 C -0.128 4.128 12 C -0.110 4.110 13 H 0.142 0.858 14 C -0.071 4.071 15 C -0.136 4.136 16 C -0.136 4.136 17 C -0.140 4.140 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.086 4.086 22 C -0.097 4.097 23 C -0.183 4.183 24 O -0.343 6.343 25 Si 0.582 3.418 26 C -0.072 4.072 27 C -0.207 4.207 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.168 0.832 41 H 0.099 0.901 42 H 0.231 0.769 43 H -0.176 1.176 44 H -0.182 1.182 45 H 0.160 0.840 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.277 5.295 -1.360 5.922 hybrid contribution 1.397 0.813 0.469 1.683 sum -0.880 6.109 -0.890 6.235 Atomic orbital electron populations 1.23292 0.76943 1.05210 1.01978 1.86200 1.22598 1.25358 1.86953 1.19046 0.90333 0.85992 0.92809 1.17219 0.86426 0.82233 1.15060 1.85740 1.70900 1.46382 1.57485 1.05298 0.75575 0.75690 0.73435 1.93628 1.81466 1.33848 1.82886 1.93644 1.44826 1.86146 1.69460 1.32658 1.15676 1.18712 1.09919 0.83334 1.22686 0.92905 1.00627 0.96581 1.22013 0.91687 1.00746 0.96527 0.85843 1.19545 0.94007 0.94874 0.98693 1.21005 0.95243 0.97743 0.99650 1.21157 0.93498 0.99047 0.99935 1.21215 0.99970 0.94269 0.98574 1.21210 0.95201 0.98113 0.98966 1.21154 0.93484 0.98700 0.99697 1.22704 0.94479 1.00484 0.94834 1.21050 1.01426 0.89125 0.96987 1.18961 0.92894 0.93282 1.04562 1.24744 1.01518 1.01410 0.90583 1.86594 1.63083 1.41492 1.43097 0.95115 0.81541 0.76281 0.88849 1.20980 0.93457 0.97721 0.95000 1.21185 1.01089 0.90709 1.07728 0.87322 0.91903 0.91589 0.87626 0.89628 0.86034 0.85990 0.86015 0.85847 0.85675 0.90038 0.87370 0.83200 0.90101 0.76917 1.17563 1.18237 0.84009 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.30 -1.07 10.13 -34.55 -0.35 -1.42 16 3 C 0.17 0.49 6.07 -39.12 -0.24 0.25 16 4 C 0.03 0.11 4.75 -39.12 -0.19 -0.08 16 5 O -0.65 -2.67 9.68 -54.21 -0.52 -3.20 16 6 S 2.61 9.70 4.99 -107.50 -0.54 9.16 16 7 O -0.92 -5.80 16.30 -67.04 -1.09 -6.89 16 8 O -0.94 -5.41 16.33 -67.09 -1.10 -6.51 16 9 C -0.66 0.23 3.33 -25.92 -0.09 0.14 16 10 H 0.15 -0.41 7.39 -51.93 -0.38 -0.79 16 11 C -0.09 0.05 6.66 -25.92 -0.17 -0.12 16 12 C -0.09 -0.07 3.58 -90.81 -0.33 -0.39 16 13 H 0.12 0.21 6.70 -51.93 -0.35 -0.14 16 14 C -0.07 -0.08 5.29 -104.62 -0.55 -0.64 16 15 C -0.12 -0.04 8.63 -39.58 -0.34 -0.39 16 16 C -0.12 -0.06 10.05 -39.58 -0.40 -0.45 16 17 C -0.12 -0.09 10.05 -39.58 -0.40 -0.49 16 18 C -0.12 -0.12 10.05 -39.58 -0.40 -0.52 16 19 C -0.11 -0.17 9.71 -39.58 -0.38 -0.55 16 20 C -0.09 0.04 7.05 -25.78 -0.18 -0.14 16 21 C -0.07 -0.06 8.23 -39.46 -0.32 -0.38 16 22 C -0.10 0.02 5.42 -104.62 -0.57 -0.55 16 23 C -0.07 0.14 2.81 36.01 0.10 0.24 16 24 O -0.54 0.36 12.74 -35.23 -0.45 -0.09 16 25 Si 0.68 -1.83 29.78 -169.99 -5.06 -6.89 16 26 C -0.05 0.06 8.66 -39.58 -0.34 -0.29 16 27 C -0.19 0.04 9.04 -39.46 -0.36 -0.32 16 28 H 0.11 -0.26 8.14 -51.93 -0.42 -0.69 16 29 H 0.06 -0.19 7.67 -51.93 -0.40 -0.59 16 30 H 0.07 -0.17 7.66 -51.93 -0.40 -0.57 16 31 H 0.11 -0.22 7.73 -51.93 -0.40 -0.62 16 32 H 0.09 -0.06 7.98 -51.93 -0.41 -0.47 16 33 H 0.12 -0.19 6.64 -52.48 -0.35 -0.54 16 34 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 35 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 36 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 37 H 0.13 0.05 8.05 -52.48 -0.42 -0.37 16 38 H 0.08 -0.06 8.10 -51.93 -0.42 -0.48 16 39 H 0.11 -0.24 6.30 -51.93 -0.33 -0.56 16 40 H 0.15 -0.17 6.84 -52.49 -0.36 -0.52 16 41 H 0.08 -0.33 7.96 -51.93 -0.41 -0.74 16 42 H 0.38 -1.72 8.74 45.56 0.40 -1.33 16 43 H -0.25 -0.08 7.11 56.52 0.40 0.33 16 44 H -0.26 0.13 7.11 56.52 0.40 0.53 16 45 H 0.14 -0.53 4.87 -52.49 -0.26 -0.78 16 46 H 0.15 -0.49 6.30 -52.49 -0.33 -0.82 16 LS Contribution 384.60 15.07 5.80 5.80 Total: 0.00 -11.31 384.60 -13.19 -24.49 By element: Atomic # 1 Polarization: -5.04 SS G_CDS: -5.71 Total: -10.75 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -4.16 Total: -3.70 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -3.51 Total: -18.10 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -5.06 Total: -6.89 kcal Atomic # 16 Polarization: 9.70 SS G_CDS: -0.54 Total: 9.16 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -11.31 -13.19 -24.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.183 kcal (2) G-P(sol) polarization free energy of solvation -11.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds