Wall clock time and date at job start Mon Mar 8 2021 11:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35999 * 116.99898 * 2 1 4 4 C 1.39150 * 120.07375 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07351 * 0.05168 * 4 3 2 6 6 S 1.52200 * 114.00315 * 94.27667 * 5 4 3 7 7 O 1.42105 * 104.27562 * 191.05900 * 6 5 4 8 8 O 1.42098 * 104.27693 * 318.92011 * 6 5 4 9 9 C 1.81398 * 104.44858 * 74.99309 * 6 5 4 10 10 H 1.09006 * 112.85000 * 286.48050 * 9 6 5 11 11 C 1.53777 * 113.61701 * 57.67196 * 9 6 5 12 12 C 1.53784 * 87.08014 * 89.12082 * 11 9 6 13 13 H 1.09001 * 113.60945 * 270.80082 * 12 11 9 14 14 C 1.50703 * 113.61748 * 139.98397 * 12 11 9 15 15 C 1.38234 * 119.99719 * 299.72763 * 14 12 11 16 16 C 1.38236 * 119.99893 * 179.76593 * 15 14 12 17 17 C 1.38231 * 119.99940 * 0.48508 * 16 15 14 18 18 C 1.38237 * 120.00201 * 359.78875 * 17 16 15 19 19 C 1.38234 * 120.00120 * 119.99646 * 14 12 11 20 20 C 1.53775 * 113.61790 * 155.28481 * 9 6 5 21 21 C 1.38568 * 119.85299 * 180.02562 * 4 3 2 22 22 C 1.38238 * 119.99997 * 0.02562 * 21 4 3 23 23 C 1.50702 * 119.92580 * 180.02562 * 22 21 4 24 24 O 1.42894 * 109.47184 * 299.99605 * 23 22 21 25 25 Si 1.86304 * 109.47055 * 179.97438 * 23 22 21 26 26 C 1.38254 * 120.14496 * 359.97438 * 22 21 4 27 27 C 1.38236 * 120.15039 * 0.02562 * 26 22 21 28 28 H 1.08999 * 109.46742 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47443 * 299.99532 * 1 2 3 30 30 H 1.08999 * 109.46964 * 60.00090 * 1 2 3 31 31 H 1.08999 * 113.61983 * 203.66458 * 11 9 6 32 32 H 1.09000 * 113.61989 * 334.57378 * 11 9 6 33 33 H 1.08004 * 119.99995 * 359.97438 * 15 14 12 34 34 H 1.08002 * 119.99900 * 180.24342 * 16 15 14 35 35 H 1.07995 * 120.00067 * 179.76434 * 17 16 15 36 36 H 1.07992 * 120.00440 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.99600 * 0.02562 * 19 14 12 38 38 H 1.09006 * 113.61348 * 25.42844 * 20 9 6 39 39 H 1.08999 * 113.61900 * 156.33596 * 20 9 6 40 40 H 1.07999 * 119.99560 * 179.97438 * 21 4 3 41 41 H 1.09001 * 109.47083 * 60.00111 * 23 22 21 42 42 H 0.96702 * 114.00106 * 180.02562 * 24 23 22 43 43 H 1.48507 * 109.99836 * 59.99786 * 25 23 22 44 44 H 1.48496 * 109.99953 * 181.32019 * 25 23 22 45 45 H 1.07999 * 119.92231 * 180.02562 * 26 22 21 46 46 H 1.07999 * 120.00424 * 180.27800 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1478 0.0000 6 16 4.6053 -0.3129 -1.3867 7 8 5.1235 -1.6196 -1.1780 8 8 3.4559 -0.1009 -2.1947 9 6 5.9330 0.8308 -1.8557 10 1 5.5649 1.8243 -2.1119 11 6 7.1107 0.8462 -0.8671 12 6 7.7235 -0.2912 -1.7011 13 1 7.4164 -1.2853 -1.3760 14 6 9.2144 -0.1700 -1.8842 15 6 9.7453 0.9395 -2.5149 16 6 11.1133 1.0530 -2.6786 17 6 11.9496 0.0523 -2.2204 18 6 11.4183 -1.0600 -1.5947 19 6 10.0507 -1.1710 -1.4264 20 6 6.9093 0.2496 -2.8918 21 6 4.0602 2.5235 0.0011 22 6 3.3028 3.6799 0.0016 23 6 3.9835 5.0244 0.0016 24 8 4.8000 5.1450 1.1681 25 14 2.6969 6.3719 0.0016 26 6 1.9223 3.6057 0.0011 27 6 1.2931 2.3748 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 7.6910 1.7685 -0.8935 32 1 6.8358 0.5468 0.1443 33 1 9.0916 1.7194 -2.8769 34 1 11.5284 1.9218 -3.1679 35 1 13.0180 0.1391 -2.3517 36 1 12.0715 -1.8421 -1.2372 37 1 9.6354 -2.0401 -0.9378 38 1 6.4719 -0.5313 -3.5141 39 1 7.4347 1.0090 -3.4709 40 1 5.1385 2.5841 0.0019 41 1 4.6057 5.1167 -0.8886 42 1 5.2692 5.9879 1.2344 43 1 1.8415 6.2573 1.2101 44 1 3.3551 7.7026 -0.0306 45 1 1.3341 4.5115 0.0011 46 1 0.2145 2.3196 -0.0044 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79710_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:48:49 Heat of formation + Delta-G solvation = -75.287901 kcal Electronic energy + Delta-G solvation = -33249.019363 eV Core-core repulsion = 28779.189223 eV Total energy + Delta-G solvation = -4469.830140 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.111 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.50656 -41.15900 -40.28104 -39.22312 -38.98433 -38.28849 -37.37908 -37.25821 -32.32011 -32.11485 -31.87676 -31.77034 -28.73149 -27.09536 -27.00514 -26.23713 -24.82070 -23.78504 -23.03039 -22.88624 -21.51477 -20.82981 -19.54454 -19.18850 -18.80351 -18.55793 -18.34251 -18.06363 -17.48402 -16.77841 -16.63026 -16.48839 -16.27693 -15.94364 -15.78211 -15.60829 -15.36226 -15.19559 -14.99266 -14.48253 -14.29346 -14.21843 -14.13820 -13.96630 -13.79536 -13.64314 -13.55355 -13.46023 -13.35815 -13.24338 -13.21350 -12.99619 -12.53621 -12.43279 -12.41563 -12.09235 -11.98674 -11.86622 -11.77922 -11.49761 -11.32925 -10.52024 -10.25823 -9.83124 -9.60801 -9.42682 -4.88484 -1.14118 -0.12919 0.00202 0.39639 0.48819 0.91291 1.31857 1.64899 2.00522 2.05459 2.20971 2.43486 2.75279 2.78925 2.94869 3.17178 3.28729 3.52203 3.53629 3.60096 3.66998 3.69813 3.97694 3.99270 4.04948 4.11823 4.14964 4.24460 4.28475 4.30558 4.34749 4.39590 4.44257 4.47599 4.53139 4.60565 4.63271 4.66516 4.70993 4.75037 4.77608 4.80466 4.93213 5.08423 5.12382 5.13892 5.17792 5.39695 5.56781 5.63298 5.70287 6.10767 6.11360 6.62482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.334 6.334 3 C 0.139 3.861 4 C 0.001 3.999 5 O -0.658 6.658 6 S 2.598 3.402 7 O -0.964 6.964 8 O -0.972 6.972 9 C -0.638 4.638 10 H 0.182 0.818 11 C -0.087 4.087 12 C -0.102 4.102 13 H 0.102 0.898 14 C -0.078 4.078 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.134 4.134 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.070 4.070 22 C -0.101 4.101 23 C -0.081 4.081 24 O -0.557 6.557 25 Si 0.761 3.239 26 C -0.051 4.051 27 C -0.186 4.186 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.137 0.863 40 H 0.167 0.833 41 H 0.111 0.889 42 H 0.398 0.602 43 H -0.294 1.294 44 H -0.286 1.286 45 H 0.169 0.831 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 9.052 -2.935 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.247 6.247 3 C 0.090 3.910 4 C -0.041 4.041 5 O -0.617 6.617 6 S 2.696 3.304 7 O -0.962 6.962 8 O -0.971 6.971 9 C -0.748 4.748 10 H 0.200 0.800 11 C -0.125 4.125 12 C -0.121 4.121 13 H 0.120 0.880 14 C -0.078 4.078 15 C -0.139 4.139 16 C -0.143 4.143 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.126 4.126 21 C -0.090 4.090 22 C -0.102 4.102 23 C -0.189 4.189 24 O -0.367 6.367 25 Si 0.665 3.335 26 C -0.070 4.070 27 C -0.205 4.205 28 H 0.132 0.868 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.150 0.850 32 H 0.100 0.900 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.155 0.845 40 H 0.184 0.816 41 H 0.129 0.871 42 H 0.249 0.751 43 H -0.221 1.221 44 H -0.213 1.213 45 H 0.185 0.815 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.972 8.239 -2.275 8.772 hybrid contribution 1.309 -0.037 0.815 1.543 sum -0.663 8.202 -1.460 8.357 Atomic orbital electron populations 1.23576 0.75181 1.06207 1.03537 1.86148 1.24727 1.26453 1.87375 1.19463 0.90784 0.86711 0.94068 1.17723 0.86945 0.82538 1.16910 1.85699 1.71395 1.47367 1.57289 1.05339 0.76098 0.75847 0.73087 1.93567 1.82024 1.37108 1.83491 1.93590 1.46901 1.86557 1.70008 1.32298 1.13726 1.18499 1.10233 0.80023 1.22812 0.92422 1.01131 0.96127 1.22014 0.91876 1.00410 0.97781 0.87971 1.19648 0.93987 0.95220 0.98931 1.21274 0.95674 0.97835 0.99076 1.21475 0.93667 0.99501 0.99628 1.21485 1.00946 0.94275 0.98514 1.21405 0.95212 0.98818 0.99331 1.21330 0.94106 0.99259 1.00616 1.22890 0.94017 1.01124 0.94611 1.21273 1.02399 0.88506 0.96784 1.19307 0.93385 0.93819 1.03690 1.24958 1.02273 1.00285 0.91422 1.86552 1.63513 1.42947 1.43737 0.94270 0.79010 0.73858 0.86318 1.21345 0.93617 0.98356 0.93634 1.21533 1.02365 0.89981 1.06577 0.86788 0.90080 0.90204 0.84952 0.90043 0.83579 0.84048 0.84690 0.85038 0.85984 0.90337 0.84541 0.81572 0.87148 0.75119 1.22098 1.21284 0.81452 0.80435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.33 -3.07 10.13 -79.37 -0.80 -3.87 16 3 C 0.14 0.97 6.07 22.57 0.14 1.11 16 4 C 0.00 0.01 4.75 22.57 0.11 0.12 16 5 O -0.66 -6.97 9.68 -60.48 -0.59 -7.56 16 6 S 2.60 24.68 4.99 -56.49 -0.28 24.40 16 7 O -0.96 -15.55 16.30 -118.57 -1.93 -17.49 16 8 O -0.97 -13.37 16.33 -118.52 -1.94 -15.30 16 9 C -0.64 0.81 3.33 31.12 0.10 0.91 16 10 H 0.18 -1.44 7.39 -2.38 -0.02 -1.45 16 11 C -0.09 0.16 6.66 31.12 0.21 0.37 16 12 C -0.10 -0.20 3.58 -10.92 -0.04 -0.24 16 13 H 0.10 0.62 6.70 -2.39 -0.02 0.61 16 14 C -0.08 -0.18 5.29 -19.87 -0.11 -0.29 16 15 C -0.12 0.10 8.63 22.27 0.19 0.30 16 16 C -0.12 0.06 10.05 22.27 0.22 0.28 16 17 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 18 C -0.13 -0.37 10.05 22.27 0.22 -0.14 16 19 C -0.14 -0.58 9.71 22.27 0.22 -0.36 16 20 C -0.09 0.15 7.05 31.21 0.22 0.37 16 21 C -0.07 -0.08 8.23 22.35 0.18 0.10 16 22 C -0.10 0.18 5.42 -19.86 -0.11 0.07 16 23 C -0.08 0.50 2.81 71.24 0.20 0.70 16 24 O -0.56 1.74 12.74 -148.98 -1.90 -0.15 16 25 Si 0.76 -5.39 29.78 68.60 2.04 -3.35 16 26 C -0.05 0.17 8.66 22.27 0.19 0.37 16 27 C -0.19 0.15 9.04 22.35 0.20 0.35 16 28 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.08 -0.47 7.67 -2.39 -0.02 -0.49 16 30 H 0.08 -0.39 7.66 -2.39 -0.02 -0.41 16 31 H 0.13 -0.91 7.73 -2.39 -0.02 -0.93 16 32 H 0.08 -0.06 7.98 -2.39 -0.02 -0.08 16 33 H 0.15 -0.95 6.64 -2.91 -0.02 -0.97 16 34 H 0.14 -0.69 8.06 -2.91 -0.02 -0.71 16 35 H 0.14 -0.32 8.06 -2.91 -0.02 -0.35 16 36 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 37 H 0.12 0.43 8.05 -2.91 -0.02 0.40 16 38 H 0.08 -0.06 8.10 -2.38 -0.02 -0.08 16 39 H 0.14 -0.98 6.30 -2.39 -0.02 -0.99 16 40 H 0.17 -0.59 6.84 -2.91 -0.02 -0.61 16 41 H 0.11 -1.31 7.96 -2.39 -0.02 -1.32 16 42 H 0.40 -4.32 8.74 -74.06 -0.65 -4.96 16 43 H -0.29 0.00 7.11 99.48 0.71 0.71 16 44 H -0.29 0.66 7.11 99.48 0.71 1.37 16 45 H 0.17 -1.58 4.87 -2.91 -0.01 -1.60 16 46 H 0.18 -1.34 6.30 -2.91 -0.02 -1.35 16 Total: 0.00 -30.33 384.60 -1.48 -31.81 By element: Atomic # 1 Polarization: -14.09 SS G_CDS: 0.42 Total: -13.67 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 3.49 Total: 5.19 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -7.16 Total: -44.38 kcal Atomic # 14 Polarization: -5.39 SS G_CDS: 2.04 Total: -3.35 kcal Atomic # 16 Polarization: 24.68 SS G_CDS: -0.28 Total: 24.40 kcal Total: -30.33 -1.48 -31.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79710_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.480 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds