Wall clock time and date at job start Mon Mar 8 2021 11:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00270 * 2 1 4 4 O 1.20826 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99860 * 180.02562 * 3 2 1 6 6 H 1.08994 * 112.90600 * 48.74956 * 5 3 2 7 7 C 1.53787 * 113.61280 * 179.97438 * 5 3 2 8 8 C 1.53778 * 87.08176 * 139.97737 * 7 5 3 9 9 H 1.09002 * 113.60842 * 89.19836 * 8 7 5 10 10 S 1.81390 * 113.61507 * 220.01657 * 8 7 5 11 11 O 1.42098 * 110.54488 * 68.37990 * 10 8 7 12 12 O 1.42101 * 110.54515 * 291.62505 * 10 8 7 13 13 O 1.52200 * 104.44944 * 180.02562 * 10 8 7 14 14 C 1.36004 * 113.99985 * 75.00104 * 13 10 8 15 15 C 1.39157 * 120.06454 * 90.00017 * 14 13 10 16 16 O 1.35990 * 120.06737 * 0.02562 * 15 14 13 17 17 C 1.42897 * 117.00234 * 179.97438 * 16 15 14 18 18 C 1.38564 * 119.86325 * 180.27091 * 15 14 13 19 19 C 1.38317 * 119.98869 * 359.49975 * 18 15 14 20 20 Br 1.89102 * 119.93474 * 180.24965 * 19 18 15 21 21 C 1.38329 * 120.12832 * 0.48015 * 19 18 15 22 22 C 1.50705 * 119.93339 * 179.76891 * 21 19 18 23 23 O 1.42900 * 109.47221 * 195.75336 * 22 21 19 24 24 Si 1.86300 * 109.46980 * 75.75639 * 22 21 19 25 25 C 1.38240 * 120.13487 * 359.78906 * 21 19 18 26 26 C 1.53781 * 113.61081 * 277.49481 * 5 3 2 27 27 H 1.09001 * 109.46755 * 300.00440 * 1 2 3 28 28 H 1.09002 * 109.46983 * 59.99932 * 1 2 3 29 29 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.08999 * 113.61087 * 25.42783 * 7 5 3 31 31 H 1.09004 * 113.61460 * 254.53241 * 7 5 3 32 32 H 1.09007 * 109.46918 * 59.99789 * 17 16 15 33 33 H 1.08996 * 109.47235 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47081 * 299.99623 * 17 16 15 35 35 H 1.07996 * 120.00173 * 179.74383 * 18 15 14 36 36 H 1.08994 * 109.46914 * 315.75558 * 22 21 19 37 37 H 0.96696 * 113.99714 * 180.02562 * 23 22 21 38 38 H 1.48503 * 109.99873 * 65.14381 * 24 22 21 39 39 H 1.48490 * 110.00273 * 186.46307 * 24 22 21 40 40 H 1.08011 * 119.99329 * 179.97438 * 25 21 19 41 41 H 1.09000 * 113.61286 * 105.47450 * 26 5 3 42 42 H 1.09002 * 113.61587 * 334.56550 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0244 0.6359 -0.7557 7 6 4.1079 2.7141 -0.0011 8 6 5.1815 2.2269 0.9862 9 1 6.0817 1.8494 0.5011 10 16 5.5399 3.4113 2.3126 11 8 4.4286 3.5284 3.1903 12 8 6.1859 4.5643 1.7904 13 8 6.6111 2.7292 3.1515 14 6 7.8453 2.7301 2.5801 15 6 8.7256 3.7799 2.8239 16 8 8.3538 4.8066 3.6345 17 6 9.3089 5.8495 3.8401 18 6 9.9799 3.7794 2.2351 19 6 10.3583 2.7317 1.4152 20 35 12.0731 2.7291 0.6180 21 6 9.4831 1.6882 1.1734 22 6 9.8980 0.5514 0.2751 23 8 8.7428 -0.1940 -0.1144 24 14 11.0774 -0.5638 1.1895 25 6 8.2284 1.6861 1.7537 26 6 4.1917 1.1231 1.3962 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.4176 3.4404 0.4278 31 1 4.5106 3.0287 -0.9639 32 1 9.5584 6.3075 2.8829 33 1 8.8862 6.6034 4.5041 34 1 10.2103 5.4331 4.2897 35 1 10.6634 4.5950 2.4195 36 1 10.3893 0.9504 -0.6123 37 1 8.9354 -0.9432 -0.6947 38 1 10.3825 -1.2110 2.3312 39 1 11.6147 -1.5983 0.2696 40 1 7.5467 0.8703 1.5630 41 1 4.6621 0.1537 1.5611 42 1 3.5243 1.4144 2.2073 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79904_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:58:41 Heat of formation + Delta-G solvation = -182.603598 kcal Electronic energy + Delta-G solvation = -33802.576562 eV Core-core repulsion = 28891.126517 eV Total energy + Delta-G solvation = -4911.450044 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.005 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64942 -41.97683 -40.38134 -39.66063 -39.37165 -38.50501 -37.49958 -37.44935 -37.35828 -33.42287 -32.33218 -30.54247 -29.94480 -28.80336 -27.76077 -27.17576 -26.34713 -24.72592 -23.48090 -23.14181 -21.57578 -20.79767 -19.90111 -19.54696 -19.17899 -18.87178 -18.51780 -18.30977 -17.67165 -17.51778 -17.01745 -16.90223 -16.74562 -16.52544 -16.29259 -16.02363 -15.66778 -15.48344 -14.83153 -14.56849 -14.49345 -14.33199 -14.12432 -14.01816 -13.99215 -13.84574 -13.70408 -13.57463 -13.42209 -13.38157 -13.13501 -12.98362 -12.86270 -12.77399 -12.61286 -12.39095 -12.12858 -11.94348 -11.89684 -11.76612 -11.64215 -11.37823 -11.35535 -10.84128 -10.16876 -9.33280 -4.94445 -1.29189 -0.43166 -0.19252 0.23879 0.80341 0.98267 1.19072 1.54818 1.63128 1.86559 1.96702 2.09129 2.38431 2.51420 2.80297 2.93377 2.96595 3.14959 3.31739 3.41811 3.53934 3.58355 3.82405 3.87685 4.08003 4.15958 4.21407 4.23886 4.25991 4.29191 4.33251 4.33852 4.36324 4.38827 4.47686 4.57010 4.61806 4.66047 4.67382 4.70928 4.86876 4.89959 5.14165 5.26138 6.00517 6.56100 6.57972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.539 6.539 5 C -0.086 4.086 6 H 0.177 0.823 7 C -0.098 4.098 8 C -0.626 4.626 9 H 0.197 0.803 10 S 2.585 3.415 11 O -0.965 6.965 12 O -0.965 6.965 13 O -0.655 6.655 14 C 0.020 3.980 15 C 0.146 3.854 16 O -0.325 6.325 17 C 0.006 3.994 18 C -0.157 4.157 19 C -0.035 4.035 20 Br 0.017 6.983 21 C -0.075 4.075 22 C -0.063 4.063 23 O -0.543 6.543 24 Si 0.703 3.297 25 C -0.069 4.069 26 C -0.097 4.097 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.183 0.817 36 H 0.112 0.888 37 H 0.406 0.594 38 H -0.290 1.290 39 H -0.256 1.256 40 H 0.182 0.818 41 H 0.140 0.860 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -4.692 -4.887 10.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.308 3.692 4 O -0.428 6.428 5 C -0.106 4.106 6 H 0.194 0.806 7 C -0.137 4.137 8 C -0.736 4.736 9 H 0.214 0.786 10 S 2.685 3.315 11 O -0.963 6.963 12 O -0.963 6.963 13 O -0.613 6.613 14 C -0.023 4.023 15 C 0.096 3.904 16 O -0.238 6.238 17 C -0.087 4.087 18 C -0.177 4.177 19 C -0.116 4.116 20 Br 0.103 6.897 21 C -0.078 4.078 22 C -0.172 4.172 23 O -0.354 6.354 24 Si 0.604 3.396 25 C -0.090 4.090 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.200 0.800 36 H 0.130 0.870 37 H 0.258 0.742 38 H -0.216 1.216 39 H -0.181 1.181 40 H 0.199 0.801 41 H 0.158 0.842 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.160 -4.207 -3.823 9.945 hybrid contribution -1.726 -0.474 -0.566 1.877 sum 6.435 -4.681 -4.389 9.087 Atomic orbital electron populations 1.23567 0.74976 1.05785 1.02474 1.86506 1.24774 1.32624 1.83357 1.24117 0.92712 0.81237 0.71163 1.90694 1.67949 1.37620 1.46558 1.22601 0.85791 1.00122 1.02043 0.80590 1.22755 0.93751 0.96227 1.00927 1.32135 1.09588 1.15059 1.16857 0.78578 1.05709 0.73761 0.76036 0.75971 1.93595 1.53146 1.86159 1.63388 1.93601 1.72393 1.48930 1.81410 1.85722 1.28006 1.85001 1.62616 1.17739 0.82571 0.98318 1.03673 1.19223 0.92733 0.87518 0.90927 1.86180 1.44817 1.31209 1.61572 1.23634 0.92976 0.88352 1.03767 1.21341 0.95348 1.01242 0.99803 1.21541 0.94178 0.96142 0.99747 1.96818 1.15890 1.97030 1.79967 1.19032 0.93030 0.95740 0.99972 1.24691 0.94696 0.95753 1.02038 1.86356 1.30475 1.47250 1.71356 0.93889 0.84083 0.82084 0.79524 1.21129 0.97951 0.96494 0.93422 1.22803 0.95105 0.99777 0.95819 0.92318 0.91824 0.85020 0.89569 0.85156 0.90452 0.86507 0.89574 0.80029 0.87001 0.74234 1.21612 1.18074 0.80120 0.84214 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.00 10.57 -51.38 -0.54 -1.54 16 3 C 0.46 2.25 7.48 71.24 0.53 2.78 16 4 O -0.54 -6.61 15.65 21.96 0.34 -6.27 16 5 C -0.09 0.22 4.26 -11.01 -0.05 0.18 16 6 H 0.18 -1.80 8.14 -2.39 -0.02 -1.82 16 7 C -0.10 0.04 6.99 31.12 0.22 0.25 16 8 C -0.63 0.81 4.03 31.14 0.13 0.94 16 9 H 0.20 -1.56 6.10 -2.39 -0.01 -1.58 16 10 S 2.59 24.24 5.14 -56.49 -0.29 23.95 16 11 O -0.96 -16.55 17.27 -118.57 -2.05 -18.60 16 12 O -0.96 -12.83 15.81 -117.14 -1.85 -14.69 16 13 O -0.65 -5.81 9.84 -60.61 -0.60 -6.40 16 14 C 0.02 0.11 4.81 22.57 0.11 0.22 16 15 C 0.15 0.77 5.93 22.57 0.13 0.91 16 16 O -0.33 -2.44 9.73 -72.58 -0.71 -3.14 16 17 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 18 C -0.16 0.20 8.77 22.37 0.20 0.40 16 19 C -0.04 0.10 5.95 22.31 0.13 0.23 16 20 Br 0.02 -0.11 30.30 -20.37 -0.62 -0.72 16 21 C -0.08 0.17 4.51 -19.84 -0.09 0.08 16 22 C -0.06 0.39 2.43 71.24 0.17 0.56 16 23 O -0.54 4.30 11.49 -148.98 -1.71 2.58 16 24 Si 0.70 -2.96 30.92 68.60 2.12 -0.84 16 25 C -0.07 0.00 7.81 22.35 0.17 0.18 16 26 C -0.10 0.23 7.19 31.14 0.22 0.46 16 27 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16 28 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H 0.09 0.40 7.39 -2.39 -0.02 0.38 16 31 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.08 -0.41 7.65 -2.38 -0.02 -0.42 16 33 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.09 -0.64 7.68 -2.39 -0.02 -0.66 16 35 H 0.18 -1.27 6.30 -2.91 -0.02 -1.29 16 36 H 0.11 -1.09 7.17 -2.39 -0.02 -1.11 16 37 H 0.41 -6.16 8.74 -74.06 -0.65 -6.81 16 38 H -0.29 -1.03 7.11 99.48 0.71 -0.33 16 39 H -0.26 0.50 7.11 99.48 0.71 1.21 16 40 H 0.18 -0.85 6.33 -2.90 -0.02 -0.87 16 41 H 0.14 -1.27 8.14 -2.39 -0.02 -1.29 16 42 H 0.09 0.18 7.38 -2.39 -0.02 0.16 16 Total: 0.00 -31.52 383.18 -1.22 -32.74 By element: Atomic # 1 Polarization: -17.04 SS G_CDS: 0.49 Total: -16.55 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 4.19 Total: 9.47 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -7.11 Total: -48.06 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: 2.12 Total: -0.84 kcal Atomic # 16 Polarization: 24.24 SS G_CDS: -0.29 Total: 23.95 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -0.62 Total: -0.72 kcal Total: -31.52 -1.22 -32.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79904_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.860 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds