Wall clock time and date at job start Mon Mar 8 2021 13:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35988 * 117.00252 * 2 1 4 4 C 1.39146 * 120.06974 * 180.02562 * 3 2 1 5 5 O 1.36014 * 120.06449 * 359.69949 * 4 3 2 6 6 S 1.52196 * 113.99559 * 90.00390 * 5 4 3 7 7 O 1.42103 * 104.27440 * 191.07383 * 6 5 4 8 8 O 1.42106 * 104.28041 * 318.92810 * 6 5 4 9 9 C 1.81397 * 104.45367 * 75.00146 * 6 5 4 10 10 H 1.09004 * 112.85045 * 311.19605 * 9 6 5 11 11 C 1.53783 * 113.61471 * 82.49963 * 9 6 5 12 12 C 1.53780 * 87.08126 * 139.98170 * 11 9 6 13 13 H 1.08996 * 113.61669 * 220.01424 * 12 11 9 14 14 O 1.42905 * 113.68456 * 89.12771 * 12 11 9 15 15 C 1.42906 * 113.99786 * 112.46710 * 14 12 11 16 16 C 1.50694 * 109.46965 * 179.97438 * 15 14 12 17 17 C 1.38233 * 120.00347 * 269.72668 * 16 15 14 18 18 C 1.38237 * 120.00191 * 179.78903 * 17 16 15 19 19 C 1.38236 * 119.99943 * 0.46434 * 18 17 16 20 20 C 1.38231 * 119.99683 * 359.76325 * 19 18 17 21 21 C 1.38236 * 120.00460 * 0.02891 * 20 19 18 22 22 C 1.53775 * 87.08090 * 334.57112 * 12 11 9 23 23 C 1.38562 * 119.87200 * 179.97438 * 4 3 2 24 24 C 1.38234 * 120.01175 * 0.02562 * 23 4 3 25 25 C 1.50699 * 119.93231 * 180.02562 * 24 23 4 26 26 O 1.42901 * 109.47221 * 15.73311 * 25 24 23 27 27 Si 1.86299 * 109.47031 * 255.73026 * 25 24 23 28 28 C 1.38334 * 120.13777 * 359.97438 * 24 23 4 29 29 Br 1.89092 * 119.93943 * 179.97438 * 28 24 23 30 30 C 1.38325 * 120.12272 * 0.02562 * 28 24 23 31 31 H 1.09007 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47133 * 299.99627 * 1 2 3 33 33 H 1.09008 * 109.47172 * 60.00063 * 1 2 3 34 34 H 1.08999 * 113.61249 * 254.53519 * 11 9 6 35 35 H 1.08999 * 113.61268 * 25.43104 * 11 9 6 36 36 H 1.08996 * 109.46684 * 299.99424 * 15 14 12 37 37 H 1.08997 * 109.46835 * 59.99549 * 15 14 12 38 38 H 1.08005 * 119.99732 * 359.97438 * 17 16 15 39 39 H 1.08002 * 119.99901 * 180.25197 * 18 17 16 40 40 H 1.07997 * 119.99824 * 179.78992 * 19 18 17 41 41 H 1.08000 * 119.99697 * 179.97438 * 20 19 18 42 42 H 1.08002 * 120.00022 * 179.97438 * 21 20 19 43 43 H 1.09006 * 113.61086 * 270.88344 * 22 12 11 44 44 H 1.09000 * 113.69359 * 139.99619 * 22 12 11 45 45 H 1.08006 * 119.99335 * 179.97438 * 23 4 3 46 46 H 1.09000 * 109.47160 * 135.73137 * 25 24 23 47 47 H 0.96701 * 113.99530 * 180.02562 * 26 25 24 48 48 H 1.48503 * 109.99843 * 65.14585 * 27 25 24 49 49 H 1.48499 * 110.00066 * 186.46437 * 27 25 24 50 50 H 1.08000 * 120.00157 * 179.97438 * 30 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4359 1.2861 -0.0005 5 8 4.1793 0.1471 0.0051 6 16 4.5175 -0.3781 -1.3827 7 8 5.0487 -1.6748 -1.1468 8 8 3.3192 -0.2015 -2.1260 9 6 5.8120 0.7398 -1.9869 10 1 5.5555 1.7917 -1.8608 11 6 7.2198 0.3822 -1.4818 12 6 7.7281 0.7299 -2.8909 13 1 8.4972 0.0502 -3.2577 14 8 8.0811 2.1054 -3.0507 15 6 9.4793 2.3278 -3.2448 16 6 9.7360 3.8044 -3.4017 17 6 9.7109 4.3808 -4.6578 18 6 9.9421 5.7362 -4.8012 19 6 10.2078 6.5134 -3.6894 20 6 10.2376 5.9361 -2.4337 21 6 10.0022 4.5816 -2.2899 22 6 6.3158 0.3935 -3.3979 23 6 4.0607 2.5228 -0.0011 24 6 3.3041 3.6797 -0.0005 25 6 3.9856 5.0238 -0.0017 26 8 5.3572 4.8622 -0.3686 27 14 3.8822 5.7740 1.7005 28 6 1.9228 3.6062 0.0000 29 35 0.8933 5.1924 0.0015 30 6 1.2931 2.3746 0.0005 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 7.5890 1.0535 -0.7064 35 1 7.3365 -0.6701 -1.2228 36 1 10.0300 1.9526 -2.3823 37 1 9.8092 1.8047 -4.1423 38 1 9.5077 3.7727 -5.5270 39 1 9.9184 6.1872 -5.7823 40 1 10.3918 7.5716 -3.8018 41 1 10.4457 6.5433 -1.5651 42 1 10.0259 4.1306 -1.3088 43 1 6.1854 -0.6558 -3.6628 44 1 5.9541 1.0729 -4.1697 45 1 5.1391 2.5829 -0.0011 46 1 3.4927 5.6805 -0.7187 47 1 5.8587 5.6888 -0.3897 48 1 4.6561 4.9522 2.6654 49 1 4.4104 7.1616 1.6769 50 1 0.2145 2.3195 0.0014 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79904_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:40:56 Heat of formation + Delta-G solvation = -111.027845 kcal Electronic energy + Delta-G solvation = -40397.998989 eV Core-core repulsion = 35112.581236 eV Total energy + Delta-G solvation = -5285.417754 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 485.037 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -42.52718 -40.81851 -40.24893 -39.99889 -39.40242 -38.14060 -37.49196 -37.05918 -36.99926 -33.42628 -32.74262 -32.32929 -31.86394 -30.54654 -28.89465 -27.54370 -27.06805 -26.58503 -26.30124 -24.55264 -23.55045 -23.12281 -22.34245 -21.75896 -20.88237 -19.55865 -19.38345 -19.10204 -18.50723 -18.37880 -17.88170 -17.53942 -17.25304 -16.86431 -16.73107 -16.63150 -16.53944 -16.35289 -16.13185 -15.71629 -15.64599 -15.48540 -15.28698 -14.80220 -14.45775 -14.40030 -14.34001 -14.18181 -14.04545 -13.89472 -13.83033 -13.65736 -13.61670 -13.49332 -13.24844 -13.09833 -13.03966 -13.01557 -12.86398 -12.67216 -12.44160 -12.18972 -12.13617 -12.08011 -11.94760 -11.82996 -11.70323 -11.48216 -11.17718 -10.91551 -10.63374 -10.16450 -9.87719 -9.82038 -9.30463 -5.03280 -1.04897 -0.31701 -0.16076 0.19804 0.27558 0.44630 1.04866 1.11293 1.49879 1.83362 1.94072 2.10303 2.35154 2.61973 2.78777 2.79851 2.94741 3.04273 3.25506 3.31343 3.39515 3.49609 3.57618 3.73602 3.81791 3.82826 3.90829 4.00047 4.04036 4.08353 4.12151 4.15299 4.18058 4.24102 4.26901 4.31774 4.33614 4.35469 4.48491 4.53954 4.54586 4.59120 4.64732 4.67273 4.71268 4.76091 4.85813 4.88295 4.99279 5.06775 5.17422 5.48182 5.55824 5.59588 6.00504 6.00763 6.10754 6.25279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.293 6.293 3 C 0.167 3.833 4 C 0.050 3.950 5 O -0.648 6.648 6 S 2.590 3.410 7 O -0.922 6.922 8 O -0.941 6.941 9 C -0.642 4.642 10 H 0.160 0.840 11 C -0.130 4.130 12 C 0.079 3.921 13 H 0.088 0.912 14 O -0.353 6.353 15 C 0.101 3.899 16 C -0.093 4.093 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.097 4.097 22 C -0.107 4.107 23 C -0.065 4.065 24 C -0.070 4.070 25 C -0.069 4.069 26 O -0.533 6.533 27 Si 0.660 3.340 28 C -0.036 4.036 29 Br -0.004 7.004 30 C -0.162 4.162 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.164 0.836 46 H 0.092 0.908 47 H 0.388 0.612 48 H -0.244 1.244 49 H -0.243 1.243 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 4.858 -0.225 4.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.205 6.205 3 C 0.117 3.883 4 C 0.007 3.993 5 O -0.607 6.607 6 S 2.686 3.314 7 O -0.920 6.920 8 O -0.940 6.940 9 C -0.749 4.749 10 H 0.178 0.822 11 C -0.169 4.169 12 C 0.020 3.980 13 H 0.106 0.894 14 O -0.272 6.272 15 C 0.025 3.975 16 C -0.093 4.093 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.115 4.115 22 C -0.145 4.145 23 C -0.086 4.086 24 C -0.072 4.072 25 C -0.178 4.178 26 O -0.340 6.340 27 Si 0.557 3.443 28 C -0.117 4.117 29 Br 0.082 6.918 30 C -0.183 4.183 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.182 0.818 46 H 0.109 0.891 47 H 0.236 0.764 48 H -0.168 1.168 49 H -0.167 1.167 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.103 4.463 0.621 4.639 hybrid contribution 1.564 0.332 -0.799 1.788 sum 0.461 4.795 -0.178 4.821 Atomic orbital electron populations 1.23330 0.76758 1.05410 1.02069 1.86218 1.22730 1.24672 1.86862 1.18875 0.90242 0.85812 0.93407 1.17289 0.86309 0.82574 1.13168 1.85746 1.71725 1.45649 1.57543 1.05762 0.76077 0.76027 0.73562 1.93640 1.81397 1.34540 1.82438 1.93646 1.42126 1.86324 1.71858 1.32236 1.15141 1.18341 1.09162 0.82206 1.23240 0.90522 1.03792 0.99326 1.22807 0.96054 0.84168 0.94998 0.89362 1.87997 1.23501 1.23103 1.92578 1.21440 0.82517 0.92738 1.00838 1.19543 1.01538 0.94457 0.93750 1.21087 0.98504 0.95175 0.96819 1.21194 0.99992 0.93887 0.99032 1.21252 0.98988 1.00063 0.92760 1.21176 1.00427 0.94960 0.97625 1.21067 0.98423 0.93883 0.98140 1.22837 0.95638 1.03035 0.93006 1.20939 1.02089 0.88351 0.97200 1.18779 0.90975 0.94474 1.02996 1.24757 0.84572 0.97244 1.11235 1.86452 1.20222 1.36663 1.90711 0.94551 0.93268 0.80021 0.76458 1.21371 0.93024 0.92900 1.04428 1.96779 1.68893 1.29643 1.96446 1.21080 1.01339 0.89255 1.06605 0.87117 0.91730 0.91559 0.88684 0.86894 0.92033 0.91988 0.85908 0.85772 0.85887 0.85850 0.85975 0.87772 0.88076 0.81824 0.89069 0.76355 1.16763 1.16682 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.29 -1.02 9.71 -41.71 -0.40 -1.42 16 3 C 0.17 0.51 5.94 -39.13 -0.23 0.28 16 4 C 0.05 0.18 4.80 -39.12 -0.19 -0.01 16 5 O -0.65 -2.84 9.84 -54.28 -0.53 -3.38 16 6 S 2.59 10.66 5.14 -107.50 -0.55 10.10 16 7 O -0.92 -6.04 17.27 -67.04 -1.16 -7.20 16 8 O -0.94 -5.71 15.80 -68.58 -1.08 -6.80 16 9 C -0.64 -0.65 3.97 -25.92 -0.10 -0.75 16 10 H 0.16 0.09 6.12 -51.93 -0.32 -0.23 16 11 C -0.13 0.01 7.47 -25.92 -0.19 -0.19 16 12 C 0.08 -0.02 4.37 -25.92 -0.11 -0.14 16 13 H 0.09 -0.20 7.87 -51.93 -0.41 -0.60 16 14 O -0.35 -0.43 10.26 -35.23 -0.36 -0.79 16 15 C 0.10 -0.02 5.90 36.00 0.21 0.19 16 16 C -0.09 -0.09 5.51 -104.63 -0.58 -0.67 16 17 C -0.10 -0.08 9.70 -39.58 -0.38 -0.46 16 18 C -0.12 -0.05 10.05 -39.58 -0.40 -0.45 16 19 C -0.11 -0.03 10.05 -39.58 -0.40 -0.42 16 20 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 21 C -0.10 -0.06 9.70 -39.58 -0.38 -0.45 16 22 C -0.11 0.00 7.50 -25.92 -0.19 -0.19 16 23 C -0.07 -0.12 7.82 -39.46 -0.31 -0.43 16 24 C -0.07 -0.06 4.51 -104.59 -0.47 -0.53 16 25 C -0.07 0.04 2.43 36.01 0.09 0.13 16 26 O -0.53 0.24 11.49 -35.23 -0.40 -0.16 16 27 Si 0.66 -0.38 30.91 -169.99 -5.25 -5.64 16 28 C -0.04 -0.01 5.95 -39.51 -0.24 -0.24 16 29 Br 0.00 0.01 30.30 -68.01 -2.06 -2.05 16 30 C -0.16 -0.07 8.77 -39.43 -0.35 -0.41 16 31 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 32 H 0.06 -0.21 7.66 -51.93 -0.40 -0.60 16 33 H 0.07 -0.15 7.67 -51.92 -0.40 -0.55 16 34 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.11 -0.06 7.43 -51.93 -0.39 -0.45 16 36 H 0.06 -0.08 8.09 -51.93 -0.42 -0.50 16 37 H 0.06 -0.09 8.08 -51.93 -0.42 -0.51 16 38 H 0.12 -0.06 8.06 -52.48 -0.42 -0.49 16 39 H 0.12 -0.15 8.06 -52.49 -0.42 -0.58 16 40 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 41 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 42 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 43 H 0.10 -0.15 8.10 -51.93 -0.42 -0.57 16 44 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 45 H 0.16 0.12 6.35 -52.48 -0.33 -0.21 16 46 H 0.09 -0.17 7.18 -51.93 -0.37 -0.54 16 47 H 0.39 -1.49 8.74 45.56 0.40 -1.10 16 48 H -0.24 -0.59 7.11 56.52 0.40 -0.19 16 49 H -0.24 -0.14 7.11 56.52 0.40 0.27 16 50 H 0.16 -0.36 6.30 -52.49 -0.33 -0.70 16 LS Contribution 443.52 15.07 6.68 6.68 Total: 0.00 -10.62 443.52 -15.15 -25.77 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: -6.39 Total: -10.90 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.63 Total: -4.21 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -3.95 Total: -19.75 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: -5.25 Total: -5.64 kcal Atomic # 16 Polarization: 10.66 SS G_CDS: -0.55 Total: 10.10 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.06 Total: -2.05 kcal Total LS contribution 6.68 Total: 6.68 kcal Total: -10.62 -15.15 -25.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79904_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.260 kcal (2) G-P(sol) polarization free energy of solvation -10.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds