Wall clock time and date at job start Mon Mar 8 2021 13:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35988 * 117.00252 * 2 1 4 4 C 1.39146 * 120.06974 * 180.02562 * 3 2 1 5 5 O 1.36014 * 120.06449 * 359.69949 * 4 3 2 6 6 S 1.52196 * 113.99559 * 90.00390 * 5 4 3 7 7 O 1.42103 * 104.27440 * 191.07383 * 6 5 4 8 8 O 1.42106 * 104.28041 * 318.92810 * 6 5 4 9 9 C 1.81397 * 104.45367 * 75.00146 * 6 5 4 10 10 H 1.09004 * 112.85045 * 311.19605 * 9 6 5 11 11 C 1.53783 * 113.61471 * 82.49963 * 9 6 5 12 12 C 1.53780 * 87.08126 * 139.98170 * 11 9 6 13 13 H 1.08996 * 113.61669 * 220.01424 * 12 11 9 14 14 O 1.42905 * 113.68456 * 89.12771 * 12 11 9 15 15 C 1.42906 * 113.99786 * 112.46710 * 14 12 11 16 16 C 1.50694 * 109.46965 * 179.97438 * 15 14 12 17 17 C 1.38233 * 120.00347 * 269.72668 * 16 15 14 18 18 C 1.38237 * 120.00191 * 179.78903 * 17 16 15 19 19 C 1.38236 * 119.99943 * 0.46434 * 18 17 16 20 20 C 1.38231 * 119.99683 * 359.76325 * 19 18 17 21 21 C 1.38236 * 120.00460 * 0.02891 * 20 19 18 22 22 C 1.53775 * 87.08090 * 334.57112 * 12 11 9 23 23 C 1.38562 * 119.87200 * 179.97438 * 4 3 2 24 24 C 1.38234 * 120.01175 * 0.02562 * 23 4 3 25 25 C 1.50699 * 119.93231 * 180.02562 * 24 23 4 26 26 O 1.42901 * 109.47221 * 15.73311 * 25 24 23 27 27 Si 1.86299 * 109.47031 * 255.73026 * 25 24 23 28 28 C 1.38334 * 120.13777 * 359.97438 * 24 23 4 29 29 Br 1.89092 * 119.93943 * 179.97438 * 28 24 23 30 30 C 1.38325 * 120.12272 * 0.02562 * 28 24 23 31 31 H 1.09007 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47133 * 299.99627 * 1 2 3 33 33 H 1.09008 * 109.47172 * 60.00063 * 1 2 3 34 34 H 1.08999 * 113.61249 * 254.53519 * 11 9 6 35 35 H 1.08999 * 113.61268 * 25.43104 * 11 9 6 36 36 H 1.08996 * 109.46684 * 299.99424 * 15 14 12 37 37 H 1.08997 * 109.46835 * 59.99549 * 15 14 12 38 38 H 1.08005 * 119.99732 * 359.97438 * 17 16 15 39 39 H 1.08002 * 119.99901 * 180.25197 * 18 17 16 40 40 H 1.07997 * 119.99824 * 179.78992 * 19 18 17 41 41 H 1.08000 * 119.99697 * 179.97438 * 20 19 18 42 42 H 1.08002 * 120.00022 * 179.97438 * 21 20 19 43 43 H 1.09006 * 113.61086 * 270.88344 * 22 12 11 44 44 H 1.09000 * 113.69359 * 139.99619 * 22 12 11 45 45 H 1.08006 * 119.99335 * 179.97438 * 23 4 3 46 46 H 1.09000 * 109.47160 * 135.73137 * 25 24 23 47 47 H 0.96701 * 113.99530 * 180.02562 * 26 25 24 48 48 H 1.48503 * 109.99843 * 65.14585 * 27 25 24 49 49 H 1.48499 * 110.00066 * 186.46437 * 27 25 24 50 50 H 1.08000 * 120.00157 * 179.97438 * 30 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4359 1.2861 -0.0005 5 8 4.1793 0.1471 0.0051 6 16 4.5175 -0.3781 -1.3827 7 8 5.0487 -1.6748 -1.1468 8 8 3.3192 -0.2015 -2.1260 9 6 5.8120 0.7398 -1.9869 10 1 5.5555 1.7917 -1.8608 11 6 7.2198 0.3822 -1.4818 12 6 7.7281 0.7299 -2.8909 13 1 8.4972 0.0502 -3.2577 14 8 8.0811 2.1054 -3.0507 15 6 9.4793 2.3278 -3.2448 16 6 9.7360 3.8044 -3.4017 17 6 9.7109 4.3808 -4.6578 18 6 9.9421 5.7362 -4.8012 19 6 10.2078 6.5134 -3.6894 20 6 10.2376 5.9361 -2.4337 21 6 10.0022 4.5816 -2.2899 22 6 6.3158 0.3935 -3.3979 23 6 4.0607 2.5228 -0.0011 24 6 3.3041 3.6797 -0.0005 25 6 3.9856 5.0238 -0.0017 26 8 5.3572 4.8622 -0.3686 27 14 3.8822 5.7740 1.7005 28 6 1.9228 3.6062 0.0000 29 35 0.8933 5.1924 0.0015 30 6 1.2931 2.3746 0.0005 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 7.5890 1.0535 -0.7064 35 1 7.3365 -0.6701 -1.2228 36 1 10.0300 1.9526 -2.3823 37 1 9.8092 1.8047 -4.1423 38 1 9.5077 3.7727 -5.5270 39 1 9.9184 6.1872 -5.7823 40 1 10.3918 7.5716 -3.8018 41 1 10.4457 6.5433 -1.5651 42 1 10.0259 4.1306 -1.3088 43 1 6.1854 -0.6558 -3.6628 44 1 5.9541 1.0729 -4.1697 45 1 5.1391 2.5829 -0.0011 46 1 3.4927 5.6805 -0.7187 47 1 5.8587 5.6888 -0.3897 48 1 4.6561 4.9522 2.6654 49 1 4.4104 7.1616 1.6769 50 1 0.2145 2.3195 0.0014 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79904_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:40:54 Heat of formation + Delta-G solvation = -109.681968 kcal Electronic energy + Delta-G solvation = -40397.940628 eV Core-core repulsion = 35112.581236 eV Total energy + Delta-G solvation = -5285.359392 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 485.037 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.66231 -40.81345 -40.39032 -39.97460 -39.43392 -38.49554 -37.49115 -37.36208 -37.05462 -33.45755 -32.71031 -32.36310 -31.82746 -30.57001 -28.84367 -27.54781 -27.06464 -26.59003 -26.30378 -24.66841 -23.51749 -23.18970 -22.30555 -21.87357 -20.94257 -19.73731 -19.49793 -19.20764 -18.61110 -18.53615 -17.86695 -17.53702 -17.28543 -16.89924 -16.75954 -16.65750 -16.56053 -16.34167 -16.16373 -15.81410 -15.74795 -15.50127 -15.30888 -14.82719 -14.53687 -14.42679 -14.31005 -14.17466 -14.12896 -14.02091 -13.87647 -13.72957 -13.66300 -13.59815 -13.41064 -13.36314 -13.20321 -13.03961 -12.91615 -12.63268 -12.42580 -12.19735 -12.16373 -12.08734 -11.90195 -11.81301 -11.69732 -11.41795 -11.26170 -10.89103 -10.60802 -10.20219 -9.86094 -9.80215 -9.36597 -5.01283 -1.24651 -0.44693 -0.22882 0.19592 0.29382 0.46201 0.82825 1.12874 1.48938 1.81148 1.93864 2.04763 2.37754 2.41676 2.63991 2.87871 2.89929 2.96467 3.21094 3.27967 3.39335 3.44060 3.53559 3.74854 3.82743 3.88730 3.90929 4.04789 4.11251 4.15678 4.18213 4.26074 4.29207 4.32063 4.33028 4.34560 4.37079 4.42771 4.44363 4.58024 4.58319 4.63697 4.69752 4.70809 4.72956 4.78135 4.83495 4.84159 5.04542 5.10421 5.11522 5.51424 5.58539 5.61812 5.98349 6.05310 6.16013 6.48787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.323 6.323 3 C 0.148 3.852 4 C 0.022 3.978 5 O -0.658 6.658 6 S 2.588 3.412 7 O -0.957 6.957 8 O -0.969 6.969 9 C -0.624 4.624 10 H 0.165 0.835 11 C -0.133 4.133 12 C 0.082 3.918 13 H 0.112 0.888 14 O -0.369 6.369 15 C 0.098 3.902 16 C -0.106 4.106 17 C -0.112 4.112 18 C -0.134 4.134 19 C -0.123 4.123 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.113 4.113 23 C -0.071 4.071 24 C -0.076 4.076 25 C -0.069 4.069 26 O -0.545 6.545 27 Si 0.712 3.288 28 C -0.036 4.036 29 Br 0.019 6.981 30 C -0.156 4.156 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.169 0.831 46 H 0.110 0.890 47 H 0.402 0.598 48 H -0.290 1.290 49 H -0.254 1.254 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 6.435 -0.726 6.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.236 6.236 3 C 0.098 3.902 4 C -0.020 4.020 5 O -0.617 6.617 6 S 2.688 3.312 7 O -0.955 6.955 8 O -0.967 6.967 9 C -0.734 4.734 10 H 0.183 0.817 11 C -0.172 4.172 12 C 0.022 3.978 13 H 0.130 0.870 14 O -0.289 6.289 15 C 0.023 3.977 16 C -0.106 4.106 17 C -0.130 4.130 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.127 4.127 22 C -0.152 4.152 23 C -0.092 4.092 24 C -0.079 4.079 25 C -0.178 4.178 26 O -0.355 6.355 27 Si 0.613 3.387 28 C -0.117 4.117 29 Br 0.105 6.895 30 C -0.176 4.176 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.135 0.865 44 H 0.122 0.878 45 H 0.186 0.814 46 H 0.127 0.873 47 H 0.253 0.747 48 H -0.217 1.217 49 H -0.178 1.178 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.274 6.035 0.119 6.169 hybrid contribution 1.620 -0.064 -0.609 1.731 sum 0.345 5.971 -0.490 6.001 Atomic orbital electron populations 1.23653 0.74864 1.06620 1.03644 1.86177 1.24928 1.25380 1.87076 1.19151 0.90402 0.86541 0.94119 1.17670 0.86907 0.82645 1.14824 1.85694 1.72139 1.46386 1.57454 1.05697 0.76264 0.76026 0.73239 1.93582 1.81835 1.37100 1.83014 1.93594 1.44040 1.86708 1.72367 1.32093 1.13933 1.17257 1.10159 0.81700 1.23362 0.89423 1.04302 1.00075 1.22851 0.96372 0.84133 0.94424 0.87001 1.87970 1.24347 1.23885 1.92652 1.21539 0.82023 0.92281 1.01884 1.19769 1.01668 0.95225 0.93930 1.21308 0.98802 0.95624 0.97243 1.21453 0.99891 0.94002 0.99850 1.21520 0.98841 1.00944 0.92769 1.21432 1.00173 0.95123 0.98288 1.21279 0.98617 0.94261 0.98579 1.23035 0.95906 1.04041 0.92219 1.21035 1.02493 0.88210 0.97423 1.19023 0.91497 0.94757 1.02613 1.24823 0.84771 0.96606 1.11573 1.86427 1.20387 1.38099 1.90593 0.93976 0.92369 0.77930 0.74472 1.21528 0.93070 0.93719 1.03384 1.96801 1.68203 1.28171 1.96303 1.21362 1.02454 0.88473 1.05326 0.86269 0.89572 0.90494 0.87966 0.86462 0.91022 0.90799 0.85088 0.84507 0.84420 0.84424 0.85173 0.86472 0.87757 0.81385 0.87277 0.74669 1.21657 1.17793 0.79724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.76 9.71 -72.37 -0.70 -3.46 16 3 C 0.15 1.09 5.94 22.57 0.13 1.22 16 4 C 0.02 0.20 4.80 22.57 0.11 0.31 16 5 O -0.66 -7.37 9.84 -60.72 -0.60 -7.97 16 6 S 2.59 26.61 5.14 -56.49 -0.29 26.32 16 7 O -0.96 -14.81 17.27 -118.57 -2.05 -16.86 16 8 O -0.97 -13.99 15.80 -117.09 -1.85 -15.84 16 9 C -0.62 -1.75 3.97 31.12 0.12 -1.62 16 10 H 0.17 0.31 6.12 -2.39 -0.01 0.30 16 11 C -0.13 0.00 7.47 31.12 0.23 0.23 16 12 C 0.08 -0.10 4.37 31.12 0.14 0.04 16 13 H 0.11 -0.66 7.87 -2.39 -0.02 -0.68 16 14 O -0.37 -0.68 10.26 -148.98 -1.53 -2.21 16 15 C 0.10 -0.10 5.90 71.23 0.42 0.32 16 16 C -0.11 -0.18 5.51 -19.87 -0.11 -0.29 16 17 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 18 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 19 C -0.12 -0.01 10.05 22.27 0.22 0.21 16 20 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 21 C -0.11 -0.13 9.70 22.27 0.22 0.09 16 22 C -0.11 0.00 7.50 31.12 0.23 0.23 16 23 C -0.07 -0.35 7.82 22.35 0.17 -0.17 16 24 C -0.08 -0.15 4.51 -19.84 -0.09 -0.24 16 25 C -0.07 0.11 2.43 71.24 0.17 0.29 16 26 O -0.54 0.67 11.49 -148.98 -1.71 -1.04 16 27 Si 0.71 -0.87 30.91 68.60 2.12 1.25 16 28 C -0.04 0.00 5.95 22.31 0.13 0.13 16 29 Br 0.02 -0.08 30.30 -20.37 -0.62 -0.70 16 30 C -0.16 -0.13 8.77 22.37 0.20 0.07 16 31 H 0.12 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H 0.09 -0.59 7.66 -2.39 -0.02 -0.60 16 33 H 0.08 -0.35 7.67 -2.38 -0.02 -0.36 16 34 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.12 -0.08 7.43 -2.39 -0.02 -0.09 16 36 H 0.07 -0.24 8.09 -2.39 -0.02 -0.26 16 37 H 0.07 -0.28 8.08 -2.39 -0.02 -0.30 16 38 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 39 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 40 H 0.14 -0.51 8.06 -2.91 -0.02 -0.53 16 41 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 42 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 43 H 0.12 -0.32 8.10 -2.38 -0.02 -0.34 16 44 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.17 0.46 6.35 -2.91 -0.02 0.45 16 46 H 0.11 -0.56 7.18 -2.39 -0.02 -0.58 16 47 H 0.40 -3.36 8.74 -74.06 -0.65 -4.01 16 48 H -0.29 -1.87 7.11 99.48 0.71 -1.17 16 49 H -0.25 -0.13 7.11 99.48 0.71 0.57 16 50 H 0.19 -1.02 6.30 -2.91 -0.02 -1.04 16 Total: 0.00 -26.20 443.52 -2.75 -28.95 By element: Atomic # 1 Polarization: -11.14 SS G_CDS: 0.39 Total: -10.74 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 4.08 Total: 2.29 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -8.44 Total: -47.38 kcal Atomic # 14 Polarization: -0.87 SS G_CDS: 2.12 Total: 1.25 kcal Atomic # 16 Polarization: 26.61 SS G_CDS: -0.29 Total: 26.32 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -0.62 Total: -0.70 kcal Total: -26.20 -2.75 -28.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79904_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.729 kcal (2) G-P(sol) polarization free energy of solvation -26.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds