Wall clock time and date at job start Mon Mar 8 2021 12:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35982 * 117.00276 * 2 1 4 4 C 1.39148 * 120.07141 * 180.02562 * 3 2 1 5 5 O 1.36010 * 120.06238 * 0.02562 * 4 3 2 6 6 S 1.52195 * 114.00472 * 269.72654 * 5 4 3 7 7 O 1.42104 * 104.27748 * 318.92874 * 6 5 4 8 8 O 1.42098 * 104.28177 * 191.06943 * 6 5 4 9 9 C 1.81406 * 104.44878 * 74.99889 * 6 5 4 10 10 H 1.08998 * 112.85108 * 53.80436 * 9 6 5 11 11 C 1.53784 * 113.61313 * 185.00422 * 9 6 5 12 12 C 1.53783 * 87.08027 * 89.19948 * 11 9 6 13 13 H 1.09004 * 113.61403 * 270.79501 * 12 11 9 14 14 C 1.50702 * 113.61300 * 139.98547 * 12 11 9 15 15 C 1.38234 * 120.00257 * 121.52818 * 14 12 11 16 16 C 1.38238 * 119.99675 * 180.25732 * 15 14 12 17 17 C 1.38228 * 120.00114 * 359.50218 * 16 15 14 18 18 C 1.38234 * 120.00051 * 0.47390 * 17 16 15 19 19 C 1.38235 * 119.99522 * 301.49830 * 14 12 11 20 20 C 1.53772 * 87.17556 * 25.39083 * 12 11 9 21 21 C 1.38563 * 119.87985 * 179.74689 * 4 3 2 22 22 C 1.38241 * 120.00428 * 0.27711 * 21 4 3 23 23 C 1.50701 * 119.93246 * 179.97438 * 22 21 4 24 24 O 1.42903 * 109.46840 * 14.99803 * 23 22 21 25 25 Si 1.86300 * 109.47140 * 134.99640 * 23 22 21 26 26 C 1.38334 * 120.13712 * 359.97323 * 22 21 4 27 27 Br 1.89105 * 119.93715 * 180.02562 * 26 22 21 28 28 C 1.38315 * 120.12805 * 359.97438 * 26 22 21 29 29 H 1.08997 * 109.47358 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46993 * 299.99588 * 1 2 3 31 31 H 1.08995 * 109.47138 * 59.99615 * 1 2 3 32 32 H 1.09001 * 113.61160 * 334.64851 * 11 9 6 33 33 H 1.08996 * 113.61216 * 203.74611 * 11 9 6 34 34 H 1.08002 * 119.99744 * 359.97115 * 15 14 12 35 35 H 1.08004 * 119.99577 * 179.72816 * 16 15 14 36 36 H 1.07999 * 119.99925 * 180.25942 * 17 16 15 37 37 H 1.08001 * 120.00294 * 179.78842 * 18 17 16 38 38 H 1.07996 * 120.00471 * 0.02562 * 19 14 12 39 39 H 1.08995 * 113.61713 * 89.15923 * 20 12 11 40 40 H 1.09002 * 113.61377 * 220.06212 * 20 12 11 41 41 H 1.07997 * 120.00171 * 180.24733 * 21 4 3 42 42 H 1.08996 * 109.47346 * 255.00175 * 23 22 21 43 43 H 0.96700 * 113.99660 * 179.97438 * 24 23 22 44 44 H 1.48499 * 110.00107 * 178.68372 * 25 23 22 45 45 H 1.48500 * 110.00162 * 300.00312 * 25 23 22 46 46 H 1.08005 * 120.00539 * 180.02562 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4359 1.2861 -0.0005 5 8 4.1793 0.1471 -0.0016 6 16 4.5238 -0.3687 1.3882 7 8 4.8443 0.8021 2.1270 8 8 5.4969 -1.3779 1.1563 9 6 2.9791 -1.1013 1.9950 10 1 2.5637 -1.8406 1.3102 11 6 3.0583 -1.5869 3.4520 12 6 2.6105 -0.1747 3.8643 13 1 3.4375 0.5197 4.0127 14 6 1.6248 -0.1628 5.0042 15 6 1.9238 0.5179 6.1696 16 6 1.0218 0.5243 7.2171 17 6 -0.1835 -0.1413 7.0954 18 6 -0.4828 -0.8216 5.9298 19 6 0.4212 -0.8321 4.8841 20 6 1.9521 -0.0616 2.4793 21 6 4.0609 2.5227 -0.0058 22 6 3.3043 3.6797 -0.0048 23 6 3.9857 5.0238 -0.0100 24 8 5.3604 4.8595 -0.3640 25 14 3.1537 6.1371 -1.2507 26 6 1.9229 3.6062 0.0010 27 35 0.8934 5.1924 0.0016 28 6 1.2932 2.3747 0.0052 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 4.0692 -1.8361 3.7748 33 1 2.3323 -2.3631 3.6935 34 1 2.8642 1.0408 6.2633 35 1 1.2574 1.0524 8.1293 36 1 -0.8900 -0.1328 7.9122 37 1 -1.4231 -1.3445 5.8360 38 1 0.1875 -1.3638 3.9736 39 1 0.9230 -0.4200 2.4544 40 1 2.0711 0.9188 2.0180 41 1 5.1392 2.5828 -0.0103 42 1 3.9169 5.4699 0.9821 43 1 5.8619 5.6860 -0.3877 44 1 3.7961 7.4759 -1.2428 45 1 3.2407 5.5400 -2.6075 46 1 0.2146 2.3196 0.0093 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79904_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:04:54 Heat of formation + Delta-G solvation = -70.889958 kcal Electronic energy + Delta-G solvation = -36809.848667 eV Core-core repulsion = 32000.391234 eV Total energy + Delta-G solvation = -4809.457433 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.85811 -41.15172 -40.40554 -39.49639 -38.90144 -38.36619 -37.49830 -37.41274 -33.84716 -32.39912 -32.18955 -31.73305 -30.81036 -28.77763 -27.17018 -26.91100 -26.35175 -24.78483 -23.79039 -23.22573 -22.78031 -21.57046 -20.97890 -19.78786 -19.21796 -18.99611 -18.64301 -18.19850 -18.07760 -17.44131 -16.91716 -16.86457 -16.41353 -16.35252 -16.03346 -15.95642 -15.69238 -15.48482 -15.21549 -14.95327 -14.53331 -14.43982 -14.31339 -14.23697 -14.16379 -13.98964 -13.97203 -13.70840 -13.54680 -13.41853 -13.25179 -13.17765 -13.05856 -12.91608 -12.81859 -12.48390 -12.40216 -12.26501 -11.97710 -11.92898 -11.80025 -11.76311 -11.43829 -11.29636 -10.73359 -10.29762 -9.78143 -9.55901 -9.39586 -4.73433 -1.26543 -0.48298 -0.22662 -0.08057 0.44426 0.53779 0.83038 1.08452 1.43102 1.82456 1.90163 2.02567 2.36053 2.60585 2.84815 2.89933 3.09118 3.20184 3.25003 3.40386 3.49930 3.61744 3.73617 3.82381 4.00013 4.04586 4.17532 4.19517 4.20540 4.31647 4.32886 4.39949 4.42021 4.45742 4.47462 4.51327 4.52850 4.57518 4.64490 4.67542 4.71391 4.80272 4.83677 4.88239 5.10162 5.12385 5.16065 5.22070 5.61646 5.68520 5.74923 5.93985 6.15385 6.50143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.308 6.308 3 C 0.146 3.854 4 C 0.026 3.974 5 O -0.660 6.660 6 S 2.595 3.405 7 O -0.965 6.965 8 O -0.973 6.973 9 C -0.621 4.621 10 H 0.179 0.821 11 C -0.091 4.091 12 C -0.100 4.100 13 H 0.103 0.897 14 C -0.074 4.074 15 C -0.133 4.133 16 C -0.129 4.129 17 C -0.134 4.134 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.080 4.080 21 C -0.044 4.044 22 C -0.077 4.077 23 C -0.066 4.066 24 O -0.561 6.561 25 Si 0.589 3.411 26 C -0.046 4.046 27 Br 0.116 6.884 28 C -0.148 4.148 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.401 0.599 44 H -0.252 1.252 45 H -0.290 1.290 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 1.257 2.699 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.221 6.221 3 C 0.096 3.904 4 C -0.017 4.017 5 O -0.619 6.619 6 S 2.694 3.306 7 O -0.964 6.964 8 O -0.971 6.971 9 C -0.732 4.732 10 H 0.197 0.803 11 C -0.129 4.129 12 C -0.119 4.119 13 H 0.121 0.879 14 C -0.074 4.074 15 C -0.151 4.151 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.137 4.137 20 C -0.117 4.117 21 C -0.065 4.065 22 C -0.080 4.080 23 C -0.175 4.175 24 O -0.371 6.371 25 Si 0.490 3.510 26 C -0.126 4.126 27 Br 0.202 6.798 28 C -0.168 4.168 29 H 0.149 0.851 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.094 0.906 41 H 0.163 0.837 42 H 0.129 0.871 43 H 0.252 0.748 44 H -0.176 1.176 45 H -0.216 1.216 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -12.273 1.608 1.732 12.498 hybrid contribution 1.925 -0.397 -0.034 1.966 sum -10.348 1.211 1.698 10.556 Atomic orbital electron populations 1.23829 0.74552 1.07364 1.04135 1.86277 1.24979 1.23562 1.87249 1.18714 0.89095 0.87271 0.95294 1.17641 0.86956 0.82506 1.14554 1.85702 1.72990 1.45865 1.57299 1.05345 0.77526 0.74659 0.73048 1.93608 1.83790 1.46710 1.72284 1.93587 1.58506 1.61715 1.83276 1.32155 1.18148 1.13440 1.09466 0.80338 1.22832 1.04131 0.98116 0.87843 1.21981 0.98378 0.97969 0.93545 0.87907 1.19594 0.95261 0.98159 0.94418 1.21301 1.00072 0.99945 0.93777 1.21384 0.94494 0.99752 0.99108 1.21466 0.97196 0.97783 0.98777 1.21454 1.00254 0.99073 0.93341 1.21236 0.93084 0.99416 0.99939 1.23100 0.99428 0.96264 0.92937 1.20880 1.01944 0.89066 0.94657 1.19052 0.91854 0.94739 1.02324 1.24767 0.86588 0.98287 1.07865 1.86395 1.20475 1.37864 1.92323 0.93528 1.00250 0.78329 0.78914 1.21454 0.92489 0.93528 1.05140 1.96372 1.62696 1.26994 1.93711 1.21397 1.02918 0.87680 1.04770 0.85145 0.89334 0.90267 0.90679 0.85082 0.86055 0.85249 0.84911 0.84133 0.83660 0.84565 0.90568 0.83700 0.87075 0.74845 1.17641 1.21574 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 0.08 8.95 113.37 1.01 1.10 16 2 O -0.31 1.84 6.79 -79.46 -0.54 1.30 16 3 C 0.15 -0.22 3.82 22.57 0.09 -0.14 16 4 C 0.03 0.16 4.33 22.57 0.10 0.26 16 5 O -0.66 -6.20 9.84 -60.68 -0.60 -6.79 16 6 S 2.59 22.79 5.07 -56.49 -0.29 22.50 16 7 O -0.97 -11.22 14.54 -118.57 -1.72 -12.95 16 8 O -0.97 -16.39 18.09 -118.57 -2.15 -18.53 16 9 C -0.62 0.99 3.39 31.18 0.11 1.10 16 10 H 0.18 -1.12 7.85 -2.39 -0.02 -1.14 16 11 C -0.09 0.22 7.15 31.12 0.22 0.44 16 12 C -0.10 0.11 3.58 -11.02 -0.04 0.07 16 13 H 0.10 0.24 6.84 -2.38 -0.02 0.23 16 14 C -0.07 0.07 5.29 -19.87 -0.11 -0.03 16 15 C -0.13 -0.15 9.71 22.27 0.22 0.07 16 16 C -0.13 -0.01 10.05 22.27 0.22 0.21 16 17 C -0.13 0.21 10.05 22.27 0.22 0.43 16 18 C -0.12 0.43 10.05 22.27 0.22 0.66 16 19 C -0.12 0.50 8.54 22.27 0.19 0.69 16 20 C -0.08 0.38 4.33 31.18 0.13 0.52 16 21 C -0.04 -0.35 8.36 22.35 0.19 -0.16 16 22 C -0.08 -0.27 5.16 -19.84 -0.10 -0.37 16 23 C -0.07 -0.14 2.83 71.24 0.20 0.06 16 24 O -0.56 -2.68 11.48 -148.98 -1.71 -4.39 16 25 Si 0.59 1.57 26.81 68.60 1.84 3.41 16 26 C -0.05 0.11 5.81 22.31 0.13 0.24 16 27 Br 0.12 -0.79 27.32 -20.37 -0.56 -1.35 16 28 C -0.15 0.89 8.63 22.37 0.19 1.09 16 29 H 0.13 -2.34 8.14 -2.39 -0.02 -2.36 16 30 H 0.09 -1.66 7.22 -2.39 -0.02 -1.67 16 31 H 0.08 -1.30 7.67 -2.39 -0.02 -1.31 16 32 H 0.07 -0.08 8.10 -2.39 -0.02 -0.10 16 33 H 0.13 -0.89 7.64 -2.39 -0.02 -0.91 16 34 H 0.12 0.05 8.05 -2.91 -0.02 0.03 16 35 H 0.13 -0.31 8.06 -2.91 -0.02 -0.34 16 36 H 0.13 -0.61 8.06 -2.91 -0.02 -0.64 16 37 H 0.14 -1.08 8.06 -2.91 -0.02 -1.10 16 38 H 0.15 -1.42 6.73 -2.91 -0.02 -1.44 16 39 H 0.14 -1.53 5.30 -2.39 -0.01 -1.54 16 40 H 0.08 -0.29 4.58 -2.39 -0.01 -0.30 16 41 H 0.15 1.58 7.13 -2.91 -0.02 1.56 16 42 H 0.11 -0.26 7.96 -2.39 -0.02 -0.28 16 43 H 0.40 -1.26 8.74 -74.06 -0.65 -1.91 16 44 H -0.25 -1.48 7.11 99.48 0.71 -0.78 16 45 H -0.29 -3.24 7.11 99.48 0.71 -2.54 16 46 H 0.20 -2.94 6.30 -2.91 -0.02 -2.95 16 Total: 0.00 -28.00 386.62 -2.07 -30.07 By element: Atomic # 1 Polarization: -19.95 SS G_CDS: 0.44 Total: -19.50 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 3.20 Total: 6.22 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -6.72 Total: -41.37 kcal Atomic # 14 Polarization: 1.57 SS G_CDS: 1.84 Total: 3.41 kcal Atomic # 16 Polarization: 22.79 SS G_CDS: -0.29 Total: 22.50 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.56 Total: -1.35 kcal Total: -28.00 -2.07 -30.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79904_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.815 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds