Wall clock time and date at job start Mon Mar 8 2021 12:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46948 * 2 1 4 4 C 1.35998 * 117.00120 * 180.02562 * 3 2 1 5 5 C 1.38543 * 120.06665 * 0.27599 * 4 3 2 6 6 C 1.38282 * 120.01560 * 180.25466 * 5 4 3 7 7 C 1.50696 * 119.92601 * 179.72383 * 6 5 4 8 8 O 1.42904 * 109.47043 * 300.01944 * 7 6 5 9 9 Si 1.86306 * 109.47167 * 180.02562 * 7 6 5 10 10 H 1.48497 * 109.46936 * 60.00141 * 9 7 6 11 11 H 1.48501 * 109.47004 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46943 * 300.00070 * 9 7 6 13 13 C 1.38212 * 120.15051 * 359.74607 * 6 5 4 14 14 C 1.38355 * 120.13706 * 359.97438 * 13 6 5 15 15 Br 1.89102 * 120.01040 * 180.02562 * 14 13 6 16 16 C 1.38611 * 119.98314 * 0.02562 * 14 13 6 17 17 O 1.36011 * 120.07252 * 179.97438 * 16 14 13 18 18 S 1.52200 * 113.99909 * 90.00240 * 17 16 14 19 19 O 1.42096 * 104.27696 * 318.92761 * 18 17 16 20 20 O 1.42097 * 104.27816 * 191.06607 * 18 17 16 21 21 C 1.81399 * 104.44943 * 74.99710 * 18 17 16 22 22 C 1.53002 * 109.47162 * 180.02562 * 21 18 17 23 23 C 1.53006 * 109.46974 * 179.97438 * 22 21 18 24 24 Si 1.86299 * 109.46797 * 179.97438 * 23 22 21 25 25 C 1.86301 * 109.47106 * 60.00209 * 24 23 22 26 26 C 1.86300 * 109.46875 * 180.02562 * 24 23 22 27 27 C 1.86300 * 109.47459 * 299.99993 * 24 23 22 28 28 H 1.09004 * 109.47093 * 299.99460 * 1 2 3 29 29 H 1.08998 * 109.47176 * 60.00224 * 1 2 3 30 30 H 1.09005 * 109.46460 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47215 * 240.00051 * 2 1 3 32 32 H 1.08999 * 109.47559 * 120.00145 * 2 1 3 33 33 H 1.08006 * 119.99409 * 359.97438 * 5 4 3 34 34 H 1.09000 * 109.47191 * 60.02196 * 7 6 5 35 35 H 0.96697 * 114.00298 * 300.00350 * 8 7 6 36 36 H 1.08003 * 119.93127 * 179.97438 * 13 6 5 37 37 H 1.09004 * 109.47089 * 299.99831 * 21 18 17 38 38 H 1.09004 * 109.47568 * 59.99841 * 21 18 17 39 39 H 1.09000 * 109.46497 * 299.99702 * 22 21 18 40 40 H 1.08996 * 109.46876 * 60.00092 * 22 21 18 41 41 H 1.08993 * 109.46955 * 300.00073 * 23 22 21 42 42 H 1.09000 * 109.47050 * 59.99902 * 23 22 21 43 43 H 1.08996 * 109.46889 * 59.99853 * 25 24 23 44 44 H 1.09001 * 109.46900 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47148 * 299.99722 * 25 24 23 46 46 H 1.09000 * 109.47204 * 59.99997 * 26 24 23 47 47 H 1.09001 * 109.47076 * 180.02562 * 26 24 23 48 48 H 1.09000 * 109.47148 * 299.99444 * 26 24 23 49 49 H 1.09002 * 109.46724 * 59.99677 * 27 24 23 50 50 H 1.08988 * 109.47614 * 179.97438 * 27 24 23 51 51 H 1.09000 * 109.47108 * 300.00303 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1998 0.4278 -0.0068 6 6 5.5705 0.6103 -0.0021 7 6 6.4881 -0.5851 -0.0026 8 8 6.2398 -1.3767 1.1609 9 14 8.2596 -0.0083 0.0053 10 1 8.5093 0.8067 1.2212 11 1 9.1637 -1.1864 0.0054 12 1 8.5176 0.8144 -1.2037 13 6 6.1010 1.8865 0.0037 14 6 5.2627 2.9872 0.0042 15 35 5.9923 4.7318 0.0113 16 6 3.8878 2.8108 -0.0006 17 8 3.0620 3.8916 0.0004 18 16 2.6904 4.3879 -1.3896 19 8 3.9008 4.2993 -2.1286 20 8 2.0636 5.6419 -1.1579 21 6 1.4844 3.1759 -1.9956 22 6 1.0292 3.5689 -3.4024 23 6 0.0125 2.5462 -3.9138 24 14 -0.5423 3.0252 -5.6265 25 6 0.9293 3.0623 -6.7684 26 6 -1.7808 1.7804 -6.2489 27 6 -1.3308 4.7123 -5.5748 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.7881 -0.5707 -0.0109 34 1 6.3047 -1.1835 -0.8951 35 1 6.3832 -0.9073 1.9940 36 1 7.1721 2.0249 0.0078 37 1 1.9454 2.1886 -2.0258 38 1 0.6235 3.1545 -1.3274 39 1 0.5684 4.5562 -3.3725 40 1 1.8903 3.5898 -4.0703 41 1 0.4737 1.5591 -3.9436 42 1 -0.8486 2.5248 -3.2460 43 1 1.3906 2.0752 -6.7986 44 1 0.6046 3.3421 -7.7706 45 1 1.6536 3.7908 -6.4041 46 1 -2.6418 1.7592 -5.5807 47 1 -2.1051 2.0604 -7.2512 48 1 -1.3199 0.7932 -6.2792 49 1 -0.6065 5.4408 -5.2104 50 1 -1.6550 4.9928 -6.5769 51 1 -2.1918 4.6907 -4.9068 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79967_14927650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:21:38 Heat of formation + Delta-G solvation = -183.600488 kcal Electronic energy + Delta-G solvation = -34666.794857 eV Core-core repulsion = 30057.836290 eV Total energy + Delta-G solvation = -4608.958567 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 454.053 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.75271 -40.55169 -39.46640 -38.45092 -37.36148 -37.32482 -35.84596 -33.61735 -33.08083 -31.32618 -30.53432 -29.60753 -28.37800 -28.30677 -28.22276 -27.26970 -25.19022 -23.70795 -23.15384 -22.77369 -21.58767 -19.89592 -19.35213 -18.87365 -18.74843 -18.11797 -17.38547 -17.22800 -16.90446 -16.32577 -16.13562 -16.05483 -15.69627 -15.34968 -14.95838 -14.81482 -14.64840 -14.48075 -14.15240 -14.04252 -13.97806 -13.86472 -13.71367 -13.62799 -13.56948 -13.48775 -13.45156 -13.39699 -13.23783 -13.13379 -13.04663 -13.02134 -12.97209 -12.96770 -12.48047 -12.27310 -12.17519 -12.10611 -11.82994 -11.82220 -11.76066 -11.60000 -11.58726 -10.70390 -10.68099 -10.57867 -10.43248 -10.10268 -9.71646 -1.22739 -0.44775 -0.29364 0.11341 0.86627 1.09969 1.44597 1.50926 1.75093 1.91366 1.92317 1.93632 2.00831 2.03479 2.45468 2.74160 2.76770 3.15148 3.29908 3.43744 3.48640 3.65527 3.69587 3.74389 3.78596 4.07640 4.08393 4.18011 4.24795 4.38316 4.40390 4.45328 4.59998 4.62076 4.64901 4.76276 4.79985 4.81558 4.84171 4.86655 4.88709 4.88752 4.89095 4.89515 4.97251 5.08971 5.10250 5.29493 5.46355 5.60668 5.66734 5.68145 5.94429 6.64628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.035 3.965 3 O -0.314 6.314 4 C 0.142 3.858 5 C -0.140 4.140 6 C -0.046 4.046 7 C -0.066 4.066 8 O -0.539 6.539 9 Si 0.947 3.053 10 H -0.250 1.250 11 H -0.262 1.262 12 H -0.255 1.255 13 C -0.127 4.127 14 C -0.046 4.046 15 Br -0.025 7.025 16 C 0.034 3.966 17 O -0.657 6.657 18 S 2.557 3.443 19 O -0.963 6.963 20 O -0.969 6.969 21 C -0.609 4.609 22 C -0.119 4.119 23 C -0.406 4.406 24 Si 1.067 2.933 25 C -0.473 4.473 26 C -0.459 4.459 27 C -0.477 4.477 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.190 0.810 34 H 0.153 0.847 35 H 0.393 0.607 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 -10.980 -0.543 11.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.038 4.038 3 O -0.228 6.228 4 C 0.092 3.908 5 C -0.158 4.158 6 C -0.048 4.048 7 C -0.177 4.177 8 O -0.346 6.346 9 Si 0.772 3.228 10 H -0.174 1.174 11 H -0.187 1.187 12 H -0.179 1.179 13 C -0.147 4.147 14 C -0.128 4.128 15 Br 0.061 6.939 16 C -0.011 4.011 17 O -0.616 6.616 18 S 2.658 3.342 19 O -0.962 6.962 20 O -0.967 6.967 21 C -0.741 4.741 22 C -0.158 4.158 23 C -0.492 4.492 24 Si 1.260 2.740 25 C -0.579 4.579 26 C -0.566 4.566 27 C -0.583 4.583 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.207 0.793 34 H 0.170 0.830 35 H 0.242 0.758 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.143 -9.598 -0.723 9.693 hybrid contribution -0.747 0.335 0.405 0.913 sum -1.890 -9.263 -0.318 9.459 Atomic orbital electron populations 1.21903 0.91534 1.04553 1.03625 1.23429 0.96949 0.79186 1.04229 1.86219 1.16001 1.33334 1.87242 1.18852 0.85142 0.90895 0.95877 1.21489 0.92238 0.99183 1.02922 1.20552 0.95155 0.94256 0.94829 1.24918 1.06058 0.92904 0.93844 1.86526 1.91921 1.40204 1.15955 0.85674 0.75601 0.79660 0.81887 1.17405 1.18664 1.17922 1.21091 1.00384 0.90516 1.02733 1.21868 0.92666 0.93857 1.04415 1.96843 1.83611 1.16458 1.96959 1.17130 0.86733 0.81871 1.15355 1.85736 1.67551 1.50673 1.57628 1.06584 0.77018 0.77077 0.73481 1.93648 1.43004 1.87260 1.72275 1.93584 1.78879 1.41188 1.83065 1.30717 1.17300 1.16994 1.09070 1.21239 1.01650 1.01494 0.91374 1.26214 1.02496 1.02464 1.17991 0.78330 0.65361 0.65148 0.65209 1.26418 1.15678 1.04627 1.11138 1.26220 1.12005 1.12185 1.06195 1.26480 1.07783 1.19652 1.04352 0.92181 0.90929 0.88088 0.88689 0.89638 0.79309 0.82958 0.75754 0.83018 0.82669 0.82431 0.90153 0.89523 0.88460 0.88827 0.90743 0.91556 0.91649 0.91000 0.91663 0.90764 0.91754 0.91531 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.70 10.28 71.98 0.74 2.44 16 2 C 0.04 -0.37 5.46 71.98 0.39 0.02 16 3 O -0.31 1.16 7.18 -79.67 -0.57 0.59 16 4 C 0.14 -0.14 5.83 22.56 0.13 0.00 16 5 C -0.14 0.85 8.60 22.35 0.19 1.04 16 6 C -0.05 0.21 5.39 -19.86 -0.11 0.11 16 7 C -0.07 0.54 2.82 71.23 0.20 0.74 16 8 O -0.54 4.28 12.77 -148.98 -1.90 2.38 16 9 Si 0.95 -4.45 25.06 68.60 1.72 -2.73 16 10 H -0.25 0.92 7.11 99.48 0.71 1.63 16 11 H -0.26 0.45 7.11 99.48 0.71 1.15 16 12 H -0.26 0.59 7.11 99.48 0.71 1.30 16 13 C -0.13 -0.08 8.40 22.29 0.19 0.11 16 14 C -0.05 -0.30 5.58 22.39 0.12 -0.18 16 15 Br -0.03 -0.26 31.62 -20.37 -0.64 -0.90 16 16 C 0.03 0.21 4.80 22.58 0.11 0.31 16 17 O -0.66 -6.43 9.19 -60.69 -0.56 -6.98 16 18 S 2.56 24.33 5.10 -56.49 -0.29 24.04 16 19 O -0.96 -11.80 14.93 -118.57 -1.77 -13.57 16 20 O -0.97 -16.47 18.09 -118.57 -2.15 -18.62 16 21 C -0.61 0.46 4.53 71.98 0.33 0.79 16 22 C -0.12 0.25 4.59 30.60 0.14 0.39 16 23 C -0.41 2.83 4.45 71.98 0.32 3.15 16 24 Si 1.07 -7.09 12.19 68.60 0.84 -6.26 16 25 C -0.47 1.52 8.65 113.37 0.98 2.50 16 26 C -0.46 2.45 8.65 113.37 0.98 3.43 16 27 C -0.48 1.05 8.65 113.37 0.98 2.03 16 28 H 0.06 -0.48 8.14 -2.38 -0.02 -0.50 16 29 H 0.07 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.10 -1.37 8.14 -2.38 -0.02 -1.39 16 31 H 0.10 -1.40 7.65 -2.39 -0.02 -1.42 16 32 H 0.09 -1.07 7.68 -2.39 -0.02 -1.09 16 33 H 0.19 -2.37 6.30 -2.91 -0.02 -2.39 16 34 H 0.15 -1.86 7.96 -2.39 -0.02 -1.88 16 35 H 0.39 -5.21 8.70 -74.06 -0.64 -5.86 16 36 H 0.15 -0.20 4.87 -2.91 -0.01 -0.22 16 37 H 0.16 -0.77 6.03 -2.39 -0.01 -0.78 16 38 H 0.16 -0.62 8.10 -2.39 -0.02 -0.64 16 39 H 0.08 -0.15 7.79 -2.39 -0.02 -0.17 16 40 H 0.09 -0.27 7.79 -2.39 -0.02 -0.29 16 41 H 0.10 -0.96 7.96 -2.39 -0.02 -0.98 16 42 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 43 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 44 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 45 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 46 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 47 H 0.06 -0.26 7.96 -2.39 -0.02 -0.28 16 48 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 49 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 50 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 51 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 Total: 0.00 -24.02 438.70 1.43 -22.59 By element: Atomic # 1 Polarization: -18.45 SS G_CDS: 1.05 Total: -17.40 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 5.70 Total: 16.86 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -6.95 Total: -36.21 kcal Atomic # 14 Polarization: -11.54 SS G_CDS: 2.56 Total: -8.99 kcal Atomic # 16 Polarization: 24.33 SS G_CDS: -0.29 Total: 24.04 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.64 Total: -0.90 kcal Total: -24.02 1.43 -22.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79967_14927650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.009 kcal (2) G-P(sol) polarization free energy of solvation -24.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds