Wall clock time and date at job start Mon Mar 8 2021 13:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46822 * 2 1 4 4 C 1.36003 * 116.99729 * 180.02562 * 3 2 1 5 5 C 1.39114 * 120.06370 * 179.97438 * 4 3 2 6 6 O 1.36007 * 120.07884 * 359.95175 * 5 4 3 7 7 S 1.52205 * 113.99978 * 265.49244 * 6 5 4 8 8 O 1.42103 * 104.27444 * 320.08525 * 7 6 5 9 9 O 1.42101 * 104.27964 * 192.22823 * 7 6 5 10 10 C 1.81399 * 104.44712 * 76.15429 * 7 6 5 11 11 H 1.08992 * 112.85371 * 305.92424 * 10 7 6 12 12 C 1.53783 * 113.61363 * 77.23132 * 10 7 6 13 13 C 1.53780 * 87.08381 * 139.97661 * 12 10 7 14 14 H 1.08993 * 113.69386 * 220.00851 * 13 12 10 15 15 O 1.42902 * 113.61340 * 89.11481 * 13 12 10 16 16 C 1.42897 * 114.00199 * 112.50221 * 15 13 12 17 17 C 1.50695 * 109.47393 * 180.02562 * 16 15 13 18 18 C 1.38242 * 120.00016 * 90.00285 * 17 16 15 19 19 C 1.38235 * 120.00215 * 180.02562 * 18 17 16 20 20 C 1.38233 * 119.99766 * 359.95169 * 19 18 17 21 21 C 1.38237 * 120.00120 * 0.28025 * 20 19 18 22 22 C 1.38234 * 120.00096 * 359.53101 * 21 20 19 23 23 C 1.53783 * 87.08007 * 334.56797 * 13 12 10 24 24 C 1.38642 * 119.84334 * 180.22517 * 5 4 3 25 25 Br 1.89100 * 120.00662 * 179.74550 * 24 5 4 26 26 C 1.38311 * 119.98580 * 359.47218 * 24 5 4 27 27 C 1.38259 * 120.13452 * 0.52889 * 26 24 5 28 28 C 1.50704 * 119.92295 * 179.72594 * 27 26 24 29 29 O 1.42907 * 109.46839 * 245.02023 * 28 27 26 30 30 Si 1.86305 * 109.47136 * 5.01757 * 28 27 26 31 31 C 1.38234 * 120.15043 * 359.74271 * 27 26 24 32 32 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47070 * 300.00365 * 1 2 3 34 34 H 1.08999 * 109.47381 * 60.00534 * 1 2 3 35 35 H 1.08995 * 109.47404 * 239.99772 * 2 1 3 36 36 H 1.09007 * 109.47232 * 119.99227 * 2 1 3 37 37 H 1.09003 * 113.61542 * 25.43084 * 12 10 7 38 38 H 1.08996 * 113.61457 * 254.52958 * 12 10 7 39 39 H 1.09001 * 109.47105 * 60.00246 * 16 15 13 40 40 H 1.08998 * 109.47125 * 300.00347 * 16 15 13 41 41 H 1.08002 * 119.99519 * 359.97438 * 18 17 16 42 42 H 1.08003 * 119.99867 * 179.97438 * 19 18 17 43 43 H 1.08004 * 119.99516 * 180.02562 * 20 19 18 44 44 H 1.08002 * 119.99649 * 179.72405 * 21 20 19 45 45 H 1.07990 * 120.00115 * 180.20678 * 22 21 20 46 46 H 1.09006 * 113.61448 * 139.97835 * 23 13 12 47 47 H 1.09000 * 113.61689 * 270.79550 * 23 13 12 48 48 H 1.07999 * 119.93587 * 180.27103 * 26 24 5 49 49 H 1.09002 * 109.46911 * 125.02193 * 28 27 26 50 50 H 0.96695 * 113.99597 * 59.99924 * 29 28 27 51 51 H 1.48496 * 109.99653 * 58.68367 * 30 28 27 52 52 H 1.48500 * 109.99794 * 179.97438 * 30 28 27 53 53 H 1.08000 * 119.99177 * 179.97438 * 31 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5256 -0.0005 5 6 3.8877 2.8105 -0.0011 6 8 3.0619 3.8911 -0.0021 7 16 2.7734 4.4485 -1.3887 8 8 4.0198 4.3653 -2.0661 9 8 2.1571 5.7046 -1.1404 10 6 1.5806 3.2847 -2.1052 11 1 1.9302 2.2526 -2.0823 12 6 0.1490 3.4641 -1.5729 13 6 -0.3332 3.2131 -3.0114 14 1 -1.1615 3.8537 -3.3137 15 8 -0.5626 1.8336 -3.3057 16 6 -1.9361 1.5069 -3.5265 17 6 -2.0605 0.0353 -3.8262 18 6 -2.2516 -0.8661 -2.7956 19 6 -2.3653 -2.2161 -3.0704 20 6 -2.2889 -2.6646 -4.3757 21 6 -2.0930 -1.7637 -5.4058 22 6 -1.9833 -0.4133 -5.1314 23 6 1.0411 3.7221 -3.4772 24 6 5.2629 2.9869 -0.0064 25 35 5.9925 4.7314 -0.0145 26 6 6.1009 1.8866 0.0000 27 6 5.5703 0.6099 0.0005 28 6 6.4879 -0.5856 0.0012 29 8 6.3267 -1.3105 -1.2197 30 14 8.2540 -0.0128 0.1548 31 6 4.2000 0.4275 0.0001 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5137 0.8901 37 1 -0.0596 4.4712 -1.2119 38 1 -0.1553 2.6896 -0.8689 39 1 -2.3155 2.0832 -4.3704 40 1 -2.5144 1.7458 -2.6341 41 1 -2.3112 -0.5157 -1.7758 42 1 -2.5141 -2.9204 -2.2652 43 1 -2.3781 -3.7193 -4.5904 44 1 -2.0289 -2.1146 -6.4252 45 1 -1.8336 0.2908 -5.9364 46 1 1.4569 3.1559 -4.3107 47 1 1.0760 4.7996 -3.6383 48 1 7.1720 2.0249 0.0003 49 1 6.2412 -1.2325 0.8431 50 1 6.5296 -0.7954 -2.0126 51 1 8.4273 0.7696 1.4050 52 1 9.1689 -1.1825 0.1573 53 1 3.7883 -0.5709 0.0002 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79967_15608174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:06:27 Heat of formation + Delta-G solvation = -103.003415 kcal Electronic energy + Delta-G solvation = -43643.975707 eV Core-core repulsion = 38203.368300 eV Total energy + Delta-G solvation = -5440.607407 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 499.052 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.72943 -40.83416 -40.48772 -39.91790 -39.43122 -38.45090 -37.35400 -37.32443 -36.98778 -33.60880 -33.11109 -32.66138 -31.79417 -31.30819 -30.51564 -27.50197 -27.30177 -27.00511 -26.48124 -25.13433 -23.61352 -23.48693 -23.13313 -22.25796 -21.95958 -21.00312 -19.80250 -19.57934 -18.91047 -18.74596 -18.27371 -17.84785 -17.59545 -17.28232 -17.21329 -16.72646 -16.60661 -16.40824 -16.27427 -15.92644 -15.85603 -15.64878 -15.34970 -15.25192 -14.95370 -14.67270 -14.57109 -14.30789 -14.26584 -14.18818 -13.89729 -13.79827 -13.71850 -13.69105 -13.58655 -13.52345 -13.47760 -13.32283 -13.17738 -13.14256 -12.99553 -12.47380 -12.30180 -12.13346 -12.06167 -12.00092 -11.96521 -11.81143 -11.71629 -11.62249 -11.53942 -11.20023 -10.59331 -10.54808 -10.11376 -9.81517 -9.75805 -9.70030 -5.01887 -1.21598 -0.44618 -0.26793 0.13459 0.33628 0.50675 0.84763 1.20401 1.60363 1.75999 1.91102 1.95102 2.41421 2.45014 2.69947 2.93251 2.99853 3.14643 3.25327 3.40301 3.45927 3.47294 3.52405 3.71788 3.77972 3.82143 3.92815 3.95462 4.02880 4.05253 4.15678 4.22643 4.26390 4.29978 4.33453 4.36728 4.37351 4.41832 4.48239 4.52280 4.61674 4.62825 4.68882 4.74372 4.76706 4.77995 4.84369 4.87939 4.90256 4.96124 5.07453 5.08630 5.15731 5.29009 5.55652 5.63361 5.65956 5.94297 6.09543 6.19894 6.68847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.042 3.958 3 O -0.308 6.308 4 C 0.145 3.855 5 C 0.034 3.966 6 O -0.654 6.654 7 S 2.571 3.429 8 O -0.960 6.960 9 O -0.957 6.957 10 C -0.607 4.607 11 H 0.163 0.837 12 C -0.130 4.130 13 C 0.085 3.915 14 H 0.109 0.891 15 O -0.364 6.364 16 C 0.098 3.902 17 C -0.104 4.104 18 C -0.106 4.106 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.045 4.045 25 Br -0.017 7.017 26 C -0.115 4.115 27 C -0.046 4.046 28 C -0.063 4.063 29 O -0.543 6.543 30 Si 0.745 3.255 31 C -0.150 4.150 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.106 0.894 47 H 0.113 0.887 48 H 0.167 0.833 49 H 0.132 0.868 50 H 0.399 0.601 51 H -0.280 1.280 52 H -0.286 1.286 53 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -7.345 -2.355 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.032 4.032 3 O -0.221 6.221 4 C 0.095 3.905 5 C -0.011 4.011 6 O -0.612 6.612 7 S 2.672 3.328 8 O -0.958 6.958 9 O -0.956 6.956 10 C -0.718 4.718 11 H 0.181 0.819 12 C -0.168 4.168 13 C 0.025 3.975 14 H 0.126 0.874 15 O -0.284 6.284 16 C 0.022 3.978 17 C -0.104 4.104 18 C -0.124 4.124 19 C -0.149 4.149 20 C -0.143 4.143 21 C -0.154 4.154 22 C -0.131 4.131 23 C -0.155 4.155 24 C -0.127 4.127 25 Br 0.070 6.930 26 C -0.134 4.134 27 C -0.049 4.049 28 C -0.174 4.174 29 O -0.351 6.351 30 Si 0.651 3.349 31 C -0.169 4.169 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.124 0.876 47 H 0.131 0.869 48 H 0.184 0.816 49 H 0.150 0.850 50 H 0.249 0.751 51 H -0.207 1.207 52 H -0.213 1.213 53 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.452 -6.467 -1.230 7.025 hybrid contribution -0.991 -0.527 0.286 1.158 sum -3.443 -6.994 -0.944 7.853 Atomic orbital electron populations 1.21931 0.91437 1.04380 1.03662 1.23294 0.97173 0.79454 1.03285 1.86219 1.16060 1.32711 1.87108 1.18861 0.85051 0.91017 0.95543 1.17099 0.86701 0.81808 1.15493 1.85708 1.68055 1.49978 1.57499 1.06248 0.76351 0.76489 0.73753 1.93669 1.40171 1.87116 1.74871 1.93586 1.79351 1.39865 1.82770 1.31928 1.12817 1.17071 1.09982 0.81910 1.23305 0.89219 1.04769 0.99520 1.22808 0.97169 0.83836 0.93666 0.87365 1.87947 1.25811 1.24179 1.90425 1.21528 0.82970 0.91801 1.01458 1.19748 1.01981 0.94837 0.93820 1.21302 0.98581 0.93132 0.99361 1.21446 1.00092 0.96067 0.97320 1.21518 0.98909 1.00626 0.93227 1.21428 1.00260 0.93413 1.00261 1.21293 0.98888 0.96292 0.96600 1.23069 0.96277 1.02819 0.93378 1.21935 0.92470 0.94272 1.04058 1.96844 1.83409 1.15922 1.96830 1.21050 1.00413 0.89812 1.02147 1.20520 0.94734 0.94581 0.95020 1.25107 1.07491 0.93241 0.91528 1.86510 1.91996 1.41099 1.15505 0.93815 0.73797 0.80672 0.86666 1.21437 0.92711 0.98927 1.03812 0.88338 0.91618 0.91010 0.90059 0.89959 0.87401 0.87717 0.91157 0.90876 0.84523 0.84281 0.84725 0.84872 0.85331 0.87579 0.86889 0.81623 0.85029 0.75084 1.20654 1.21253 0.80498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.19 10.13 71.98 0.73 1.92 16 2 C 0.04 -0.26 5.46 71.98 0.39 0.13 16 3 O -0.31 0.18 7.60 -79.70 -0.61 -0.43 16 4 C 0.15 0.22 5.94 22.56 0.13 0.35 16 5 C 0.03 0.24 4.88 22.58 0.11 0.35 16 6 O -0.65 -6.55 9.25 -60.64 -0.56 -7.12 16 7 S 2.57 23.97 4.95 -56.49 -0.28 23.69 16 8 O -0.96 -11.41 14.22 -118.57 -1.69 -13.09 16 9 O -0.96 -14.41 17.42 -118.57 -2.06 -16.48 16 10 C -0.61 -0.97 3.25 31.12 0.10 -0.87 16 11 H 0.16 0.04 6.17 -2.39 -0.01 0.03 16 12 C -0.13 0.11 7.47 31.12 0.23 0.35 16 13 C 0.08 -0.25 4.38 31.12 0.14 -0.12 16 14 H 0.11 -0.76 7.87 -2.39 -0.02 -0.78 16 15 O -0.36 0.53 10.25 -148.98 -1.53 -1.00 16 16 C 0.10 -0.37 5.90 71.23 0.42 0.05 16 17 C -0.10 0.13 5.51 -19.87 -0.11 0.02 16 18 C -0.11 0.28 9.70 22.27 0.22 0.50 16 19 C -0.13 0.35 10.05 22.27 0.22 0.57 16 20 C -0.12 0.20 10.05 22.27 0.22 0.42 16 21 C -0.14 0.11 10.05 22.27 0.22 0.33 16 22 C -0.11 0.05 9.70 22.27 0.22 0.27 16 23 C -0.12 0.16 7.50 31.12 0.23 0.39 16 24 C -0.04 -0.29 5.49 22.38 0.12 -0.17 16 25 Br -0.02 -0.16 31.02 -20.37 -0.63 -0.79 16 26 C -0.11 -0.04 8.40 22.29 0.19 0.15 16 27 C -0.05 0.13 5.35 -19.86 -0.11 0.03 16 28 C -0.06 0.34 2.80 71.24 0.20 0.54 16 29 O -0.54 2.94 12.83 -148.98 -1.91 1.03 16 30 Si 0.75 -3.24 29.80 68.60 2.04 -1.20 16 31 C -0.15 0.44 8.67 22.35 0.19 0.63 16 32 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 33 H 0.06 -0.44 8.14 -2.38 -0.02 -0.45 16 34 H 0.07 -0.42 7.28 -2.39 -0.02 -0.43 16 35 H 0.08 -0.66 7.66 -2.39 -0.02 -0.68 16 36 H 0.08 -0.74 7.66 -2.38 -0.02 -0.75 16 37 H 0.11 -0.06 7.54 -2.39 -0.02 -0.08 16 38 H 0.10 -0.24 7.08 -2.39 -0.02 -0.26 16 39 H 0.07 -0.40 8.09 -2.39 -0.02 -0.42 16 40 H 0.07 -0.46 8.08 -2.39 -0.02 -0.48 16 41 H 0.14 -0.87 7.96 -2.91 -0.02 -0.90 16 42 H 0.14 -0.91 8.06 -2.91 -0.02 -0.94 16 43 H 0.13 -0.65 8.06 -2.91 -0.02 -0.68 16 44 H 0.13 -0.49 8.06 -2.91 -0.02 -0.52 16 45 H 0.13 -0.34 8.06 -2.92 -0.02 -0.36 16 46 H 0.11 -0.26 8.14 -2.38 -0.02 -0.28 16 47 H 0.11 -0.36 8.10 -2.39 -0.02 -0.37 16 48 H 0.17 -0.61 4.89 -2.91 -0.01 -0.62 16 49 H 0.13 -0.89 7.96 -2.39 -0.02 -0.90 16 50 H 0.40 -4.91 8.70 -74.06 -0.64 -5.56 16 51 H -0.28 -0.24 7.11 99.48 0.71 0.46 16 52 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 53 H 0.18 -1.39 6.30 -2.91 -0.02 -1.41 16 Total: 0.00 -24.18 460.24 -2.78 -26.96 By element: Atomic # 1 Polarization: -17.79 SS G_CDS: 0.36 Total: -17.42 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 4.08 Total: 5.84 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -8.36 Total: -37.09 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.04 Total: -1.20 kcal Atomic # 16 Polarization: 23.97 SS G_CDS: -0.28 Total: 23.69 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -0.63 Total: -0.79 kcal Total: -24.18 -2.78 -26.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79967_15608174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.043 kcal (2) G-P(sol) polarization free energy of solvation -24.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds