Wall clock time and date at job start Mon Mar 8 2021 13:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45203 * 109.47125 * 2 1 4 4 C 1.34223 * 117.00039 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99960 * 179.97438 * 4 3 2 7 7 H 1.08995 * 112.85109 * 311.20101 * 6 4 3 8 8 C 1.53788 * 113.61040 * 82.50640 * 6 4 3 9 9 C 1.53776 * 87.07768 * 139.98062 * 8 6 4 10 10 F 1.39904 * 113.69575 * 89.12651 * 9 8 6 11 11 C 1.53009 * 113.61249 * 220.01489 * 9 8 6 12 12 S 1.81397 * 109.47235 * 282.49888 * 11 9 8 13 13 O 1.42105 * 110.54275 * 68.37271 * 12 11 9 14 14 O 1.42101 * 110.54298 * 291.62373 * 12 11 9 15 15 O 1.52200 * 104.44908 * 179.97438 * 12 11 9 16 16 C 1.36011 * 113.99616 * 75.00041 * 15 12 11 17 17 C 1.39125 * 120.07628 * 90.00239 * 16 15 12 18 18 O 1.35999 * 120.06600 * 359.94810 * 17 16 15 19 19 C 1.42900 * 117.00000 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47265 * 180.02562 * 19 18 17 21 21 C 1.38586 * 119.86469 * 179.97438 * 17 16 15 22 22 C 1.38234 * 120.01759 * 359.97438 * 21 17 16 23 23 C 1.50694 * 119.92533 * 180.02562 * 22 21 17 24 24 O 1.42893 * 109.47400 * 64.99690 * 23 22 21 25 25 Si 1.86301 * 109.47207 * 185.00053 * 23 22 21 26 26 C 1.38252 * 120.15145 * 0.02562 * 22 21 17 27 27 C 1.38317 * 120.13584 * 359.74714 * 26 22 21 28 28 Br 1.89099 * 120.01116 * 180.25531 * 27 26 22 29 29 C 1.53774 * 87.08574 * 334.56434 * 9 8 6 30 30 H 1.09002 * 109.46657 * 300.00342 * 1 2 3 31 31 H 1.08999 * 109.46968 * 60.00193 * 1 2 3 32 32 H 1.08996 * 109.46850 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.46926 * 240.00079 * 2 1 3 34 34 H 1.08999 * 109.46968 * 119.99807 * 2 1 3 35 35 H 1.08995 * 113.61694 * 25.42994 * 8 6 4 36 36 H 1.09000 * 113.60724 * 254.52444 * 8 6 4 37 37 H 1.09004 * 109.47149 * 162.49913 * 11 9 8 38 38 H 1.09000 * 109.46805 * 42.49765 * 11 9 8 39 39 H 1.09005 * 109.46924 * 300.00646 * 19 18 17 40 40 H 1.08998 * 109.47021 * 60.00059 * 19 18 17 41 41 H 1.09002 * 109.46846 * 59.99802 * 20 19 18 42 42 H 1.08996 * 109.46794 * 179.97438 * 20 19 18 43 43 H 1.08997 * 109.46823 * 300.00089 * 20 19 18 44 44 H 1.08003 * 119.99133 * 179.97438 * 21 17 16 45 45 H 1.09006 * 109.47320 * 304.99854 * 23 22 21 46 46 H 0.96701 * 113.99803 * 60.00008 * 24 23 22 47 47 H 1.48496 * 110.00212 * 180.02562 * 25 23 22 48 48 H 1.48496 * 109.99826 * 301.31780 * 25 23 22 49 49 H 1.07995 * 119.93693 * 179.97438 * 26 22 21 50 50 H 1.09005 * 113.61997 * 139.98156 * 29 9 8 51 51 H 1.08999 * 113.61966 * 270.88753 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4715 3.5810 -0.7563 8 6 3.9857 3.5777 1.3967 9 6 5.3560 4.1430 0.9876 10 9 5.2850 5.3937 0.3646 11 6 6.3977 4.0954 2.1073 12 16 6.0845 5.4414 3.2823 13 8 4.8753 5.2119 3.9927 14 8 6.3532 6.7007 2.6812 15 8 7.1728 5.2875 4.3351 16 6 8.4023 5.6989 3.9239 17 6 8.7971 7.0186 4.1186 18 8 7.9541 7.9004 4.7197 19 6 8.4262 9.2389 4.8861 20 6 7.3485 10.0778 5.5759 21 6 10.0511 7.4329 3.6984 22 6 10.9071 6.5357 3.0876 23 6 12.2704 6.9883 2.6320 24 8 13.0544 7.3569 3.7684 25 14 13.1132 5.5995 1.7200 26 6 10.5154 5.2241 2.8937 27 6 9.2672 4.8026 3.3149 28 35 8.7379 3.0060 3.0544 29 6 5.4583 2.9682 0.0008 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.0374 2.8516 2.2080 36 1 3.2285 4.3444 1.5611 37 1 7.3945 4.2096 1.6813 38 1 6.3312 3.1385 2.6249 39 1 9.3283 9.2325 5.4978 40 1 8.6521 9.6684 3.9101 41 1 7.1230 9.6480 6.5520 42 1 7.7089 11.0985 5.7032 43 1 6.4463 10.0841 4.9645 44 1 10.3596 8.4571 3.8482 45 1 12.1653 7.8472 1.9690 46 1 13.1891 6.6395 4.4026 47 1 14.4589 6.0330 1.2660 48 1 13.2339 4.4117 2.6030 49 1 11.1868 4.5262 2.4158 50 1 5.8899 3.2426 -0.9618 51 1 5.9126 2.0753 0.4303 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79967_16464788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:21:14 Heat of formation + Delta-G solvation = -218.886998 kcal Electronic energy + Delta-G solvation = -43147.033277 eV Core-core repulsion = 37297.943034 eV Total energy + Delta-G solvation = -5849.090243 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 497.042 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.19252 -42.80182 -41.86862 -40.61135 -39.51367 -39.36361 -38.55833 -37.59055 -37.55273 -37.38558 -34.04643 -33.14706 -32.80640 -32.00630 -31.40217 -30.63023 -27.34192 -27.31053 -26.98333 -25.27985 -24.04156 -23.66863 -23.18306 -22.38052 -21.75789 -20.89728 -20.02146 -19.50683 -19.16518 -19.05415 -18.72484 -18.25855 -17.81968 -17.67887 -17.50805 -17.31237 -17.23114 -16.75145 -16.36548 -16.32115 -16.21387 -16.06616 -15.76365 -15.48861 -15.37480 -14.91041 -14.80413 -14.72519 -14.62596 -14.34785 -14.30144 -14.01105 -13.74502 -13.70101 -13.62794 -13.58108 -13.55145 -13.48985 -13.42984 -13.12568 -13.07593 -13.01926 -12.96154 -12.60940 -12.54554 -12.52463 -12.34134 -12.09238 -11.94881 -11.81191 -11.69924 -11.62099 -11.58123 -11.42021 -11.20992 -10.75700 -10.23693 -9.70946 -4.92497 -1.43245 -0.59451 -0.26705 -0.12248 0.71802 0.97480 1.21338 1.54438 1.59181 1.81842 1.86687 1.97803 2.22435 2.57507 2.62008 2.72597 2.88806 3.07703 3.14417 3.15932 3.27354 3.38383 3.40898 3.61516 3.69199 3.74458 3.79248 3.95632 3.96410 3.98778 4.02346 4.04640 4.19061 4.26364 4.27252 4.30958 4.34176 4.40347 4.41259 4.51985 4.58284 4.60527 4.69907 4.74713 4.80794 4.84234 4.85574 4.88540 5.01979 5.04352 5.11629 5.16489 5.39208 5.96303 6.42995 6.58485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.476 3.524 5 O -0.529 6.529 6 C -0.106 4.106 7 H 0.155 0.845 8 C -0.158 4.158 9 C 0.098 3.902 10 F -0.180 7.180 11 C -0.666 4.666 12 S 2.579 3.421 13 O -0.948 6.948 14 O -0.950 6.950 15 O -0.650 6.650 16 C 0.027 3.973 17 C 0.160 3.840 18 O -0.321 6.321 19 C 0.039 3.961 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.041 4.041 23 C -0.081 4.081 24 O -0.538 6.538 25 Si 0.755 3.245 26 C -0.106 4.106 27 C -0.075 4.075 28 Br 0.003 6.997 29 C -0.110 4.110 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.057 0.943 44 H 0.175 0.825 45 H 0.146 0.854 46 H 0.390 0.610 47 H -0.295 1.295 48 H -0.269 1.269 49 H 0.177 0.823 50 H 0.120 0.880 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -0.187 -3.341 5.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.320 3.680 5 O -0.418 6.418 6 C -0.124 4.124 7 H 0.173 0.827 8 C -0.195 4.195 9 C 0.078 3.922 10 F -0.161 7.161 11 C -0.794 4.794 12 S 2.676 3.324 13 O -0.946 6.946 14 O -0.948 6.948 15 O -0.609 6.609 16 C -0.018 4.018 17 C 0.109 3.891 18 O -0.234 6.234 19 C -0.035 4.035 20 C -0.215 4.215 21 C -0.168 4.168 22 C -0.043 4.043 23 C -0.190 4.190 24 O -0.346 6.346 25 Si 0.659 3.341 26 C -0.125 4.125 27 C -0.156 4.156 28 Br 0.089 6.911 29 C -0.149 4.149 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.192 0.808 38 H 0.197 0.803 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.076 0.924 44 H 0.192 0.808 45 H 0.164 0.836 46 H 0.240 0.760 47 H -0.222 1.222 48 H -0.195 1.195 49 H 0.194 0.806 50 H 0.138 0.862 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.843 -0.644 -3.152 5.012 hybrid contribution 0.167 -0.096 1.182 1.198 sum 4.010 -0.740 -1.970 4.528 Atomic orbital electron populations 1.21840 0.90881 1.04289 1.03704 1.23294 0.96847 0.79129 1.02746 1.86531 1.24134 1.33741 1.83272 1.23619 0.80701 0.92336 0.71318 1.90667 1.60983 1.43718 1.46415 1.22586 0.97779 0.90947 1.01120 0.82743 1.23945 0.96154 1.02240 0.97175 1.21332 0.95337 0.82176 0.93327 1.92985 1.97057 1.42379 1.83645 1.32094 1.10890 1.22596 1.13798 1.05989 0.74411 0.76792 0.75181 1.93609 1.43620 1.87010 1.70374 1.93631 1.83127 1.39614 1.78430 1.85768 1.28520 1.85509 1.61079 1.17185 0.83809 0.91611 1.09204 1.19077 0.90426 0.87763 0.91809 1.86186 1.42193 1.22289 1.72764 1.23362 0.99701 0.77808 1.02633 1.21881 0.98550 1.00217 1.00819 1.21512 0.90794 1.03299 1.01225 1.20485 0.97031 0.92097 0.94710 1.25320 0.88154 1.12282 0.93200 1.86627 1.72060 1.41712 1.34245 0.94098 0.80656 0.74376 0.84987 1.21160 0.93845 0.96815 1.00727 1.21877 0.97470 0.92022 1.04270 1.96851 1.90612 1.08561 1.95037 1.23584 0.93216 0.96937 1.01139 0.91415 0.91243 0.88460 0.91006 0.91169 0.85947 0.87161 0.80821 0.80301 0.89223 0.89589 0.91898 0.87319 0.92405 0.80788 0.83616 0.75992 1.22241 1.19485 0.80590 0.86199 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.48 10.29 71.98 0.74 1.22 16 2 C 0.05 0.04 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.29 10.22 -51.35 -0.52 -1.81 16 4 C 0.48 1.68 7.48 71.24 0.53 2.22 16 5 O -0.53 -4.30 15.65 21.97 0.34 -3.95 16 6 C -0.11 0.14 4.24 -11.01 -0.05 0.09 16 7 H 0.15 -0.75 8.14 -2.39 -0.02 -0.77 16 8 C -0.16 -0.02 6.90 31.12 0.21 0.19 16 9 C 0.10 0.05 1.57 -10.27 -0.02 0.03 16 10 F -0.18 -0.79 16.51 44.97 0.74 -0.05 16 11 C -0.67 -0.32 3.50 71.99 0.25 -0.07 16 12 S 2.58 24.15 4.92 -56.49 -0.28 23.88 16 13 O -0.95 -14.06 17.96 -118.57 -2.13 -16.19 16 14 O -0.95 -12.48 15.37 -117.13 -1.80 -14.28 16 15 O -0.65 -5.89 9.28 -60.69 -0.56 -6.45 16 16 C 0.03 0.15 4.80 22.58 0.11 0.26 16 17 C 0.16 0.79 5.93 22.57 0.13 0.92 16 18 O -0.32 -2.42 9.36 -72.67 -0.68 -3.10 16 19 C 0.04 -0.02 5.46 71.98 0.39 0.37 16 20 C -0.16 0.17 10.28 71.98 0.74 0.91 16 21 C -0.15 0.28 8.67 22.35 0.19 0.47 16 22 C -0.04 0.20 5.35 -19.86 -0.11 0.09 16 23 C -0.08 0.60 2.80 71.23 0.20 0.79 16 24 O -0.54 2.45 12.83 -148.98 -1.91 0.53 16 25 Si 0.76 -5.75 29.88 68.60 2.05 -3.70 16 26 C -0.11 0.48 8.40 22.29 0.19 0.67 16 27 C -0.07 0.00 5.55 22.39 0.12 0.12 16 28 Br 0.00 -0.01 27.59 -20.37 -0.56 -0.57 16 29 C -0.11 0.34 6.86 31.12 0.21 0.55 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 34 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 35 H 0.12 -0.17 7.99 -2.39 -0.02 -0.19 16 36 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.17 -0.60 5.41 -2.39 -0.01 -0.62 16 38 H 0.18 -0.65 6.70 -2.39 -0.02 -0.67 16 39 H 0.09 -0.46 7.66 -2.38 -0.02 -0.48 16 40 H 0.09 -0.32 7.66 -2.39 -0.02 -0.34 16 41 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.17 -1.07 6.30 -2.91 -0.02 -1.09 16 45 H 0.15 -1.49 7.96 -2.38 -0.02 -1.51 16 46 H 0.39 -3.84 8.70 -74.06 -0.64 -4.48 16 47 H -0.29 -0.14 7.11 99.48 0.71 0.56 16 48 H -0.27 1.26 7.01 99.48 0.70 1.95 16 49 H 0.18 -1.67 4.83 -2.91 -0.01 -1.68 16 50 H 0.12 -0.75 8.14 -2.38 -0.02 -0.77 16 51 H 0.12 -0.45 7.39 -2.39 -0.02 -0.47 16 Total: 0.00 -27.95 448.10 -0.61 -28.56 By element: Atomic # 1 Polarization: -12.59 SS G_CDS: 0.39 Total: -12.20 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 4.31 Total: 9.33 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -7.27 Total: -45.25 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.74 Total: -0.05 kcal Atomic # 14 Polarization: -5.75 SS G_CDS: 2.05 Total: -3.70 kcal Atomic # 16 Polarization: 24.15 SS G_CDS: -0.28 Total: 23.88 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.56 Total: -0.57 kcal Total: -27.95 -0.61 -28.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79967_16464788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.327 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds