Wall clock time and date at job start Mon Mar 8 2021 12:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34219 * 117.00351 * 2 1 4 4 O 1.20828 * 119.99959 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00357 * 180.02562 * 3 2 1 6 6 H 1.09007 * 112.84931 * 48.80147 * 5 3 2 7 7 C 1.53787 * 113.61735 * 179.97438 * 5 3 2 8 8 C 1.53780 * 87.07724 * 140.06555 * 7 5 3 9 9 H 1.09002 * 113.61523 * 89.20375 * 8 7 5 10 10 S 1.81403 * 113.61076 * 220.01666 * 8 7 5 11 11 O 1.42108 * 110.54033 * 62.85578 * 10 8 7 12 12 O 1.42099 * 110.54514 * 286.10616 * 10 8 7 13 13 O 1.52199 * 104.44847 * 174.47594 * 10 8 7 14 14 C 1.35898 * 113.99875 * 75.85008 * 13 10 8 15 15 C 1.38714 * 120.05767 * 93.66533 * 14 13 10 16 16 N 1.47995 * 120.03092 * 359.97438 * 15 14 13 17 17 O 1.21797 * 120.00106 * 185.28717 * 16 15 14 18 18 O 1.21801 * 119.99668 * 5.29523 * 16 15 14 19 19 C 1.38167 * 119.94156 * 179.70726 * 15 14 13 20 20 C 1.38246 * 120.05489 * 0.54650 * 19 15 14 21 21 C 1.50705 * 119.94297 * 179.72926 * 20 19 15 22 22 O 1.42898 * 109.47152 * 64.72693 * 21 20 19 23 23 Si 1.86308 * 109.46960 * 184.72714 * 21 20 19 24 24 C 1.38286 * 120.11517 * 359.45129 * 20 19 15 25 25 C 1.38122 * 120.05154 * 0.27521 * 24 20 19 26 26 C 1.53774 * 87.08566 * 334.56944 * 8 7 5 27 27 H 1.08994 * 109.47156 * 60.00153 * 1 2 3 28 28 H 1.08997 * 109.47374 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47160 * 299.99979 * 1 2 3 30 30 H 1.08999 * 113.61107 * 25.51786 * 7 5 3 31 31 H 1.09003 * 113.61121 * 254.61403 * 7 5 3 32 32 H 1.08000 * 119.97615 * 180.29950 * 19 15 14 33 33 H 1.09000 * 109.47245 * 304.72458 * 21 20 19 34 34 H 0.96690 * 114.00249 * 60.00114 * 22 21 20 35 35 H 1.48495 * 109.99795 * 58.67918 * 23 21 20 36 36 H 1.48504 * 109.99885 * 179.97438 * 23 21 20 37 37 H 1.07999 * 119.97758 * 180.29423 * 24 20 19 38 38 H 1.08005 * 120.02812 * 179.97438 * 25 24 20 39 39 H 1.09001 * 113.61529 * 139.98286 * 26 8 7 40 40 H 1.09001 * 113.61048 * 270.89092 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 4.0233 0.6363 -0.7567 7 6 4.1078 2.7141 -0.0011 8 6 5.1828 2.2263 0.9844 9 1 6.0823 1.8491 0.4979 10 16 5.5431 3.4100 2.3110 11 8 4.3915 3.6226 3.1159 12 8 6.2997 4.5040 1.8112 13 8 6.5097 2.6720 3.2262 14 6 7.7767 2.5904 2.7416 15 6 8.7200 3.5424 3.0993 16 7 8.3477 4.6487 4.0091 17 8 9.1466 5.5368 4.2467 18 8 7.2424 4.6709 4.5204 19 6 10.0091 3.4537 2.6100 20 6 10.3560 2.4238 1.7555 21 6 11.7612 2.3330 1.2185 22 8 12.6686 2.0943 2.2963 23 14 11.8688 0.9326 -0.0056 24 6 9.4174 1.4735 1.3973 25 6 8.1290 1.5545 1.8883 26 6 4.1936 1.1229 1.3952 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.4181 3.4402 0.4292 31 1 4.5092 3.0292 -0.9643 32 1 10.7453 4.1918 2.8921 33 1 12.0224 3.2686 0.7240 34 1 12.4956 1.2765 2.7823 35 1 10.9069 1.1530 -1.1153 36 1 13.2495 0.8328 -0.5432 37 1 9.6921 0.6672 0.7334 38 1 7.3961 0.8123 1.6079 39 1 4.6642 0.1536 1.5594 40 1 3.5273 1.4141 2.2072 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80028_13206342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:42:28 Heat of formation + Delta-G solvation = -148.751140 kcal Electronic energy + Delta-G solvation = -33286.648419 eV Core-core repulsion = 28359.687706 eV Total energy + Delta-G solvation = -4926.960713 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.073 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.78883 -42.36654 -41.96085 -40.35376 -39.65504 -38.67586 -37.92881 -37.63601 -37.52443 -37.47706 -33.63707 -32.67950 -29.94392 -28.14628 -27.81742 -27.38158 -27.10953 -24.59767 -23.83403 -23.36313 -22.21207 -20.99178 -20.28669 -20.16871 -19.86357 -19.52682 -19.06948 -18.65763 -18.48069 -18.26525 -17.76628 -17.53052 -17.04293 -16.74753 -16.60793 -16.33691 -15.84640 -15.72301 -14.97448 -14.90943 -14.66340 -14.63144 -14.49969 -14.03795 -13.94263 -13.84725 -13.75631 -13.73166 -13.53719 -13.46238 -13.40687 -13.05220 -13.04337 -12.80987 -12.59043 -12.54664 -12.29485 -11.99370 -11.93250 -11.87044 -11.68701 -11.42632 -11.04853 -10.70678 -10.46383 -4.96613 -1.85169 -1.28287 -0.60528 -0.11525 0.00677 0.58311 1.01255 1.23780 1.66069 1.66205 1.73557 2.09570 2.26955 2.39827 2.58713 2.79052 2.87585 3.02127 3.15622 3.19654 3.36954 3.51199 3.53361 3.59068 3.83557 3.93424 4.15823 4.20687 4.26531 4.27522 4.28191 4.32222 4.34452 4.40905 4.44391 4.60030 4.62040 4.69360 4.71947 4.82034 4.91712 5.07033 5.30655 6.09184 6.59611 6.73179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.354 6.354 3 C 0.459 3.541 4 O -0.544 6.544 5 C -0.083 4.083 6 H 0.190 0.810 7 C -0.108 4.108 8 C -0.613 4.613 9 H 0.221 0.779 10 S 2.573 3.427 11 O -0.954 6.954 12 O -0.987 6.987 13 O -0.655 6.655 14 C 0.117 3.883 15 C -0.059 4.059 16 N 0.031 4.969 17 O -0.144 6.144 18 O -0.214 6.214 19 C -0.018 4.018 20 C -0.095 4.095 21 C -0.091 4.091 22 O -0.553 6.553 23 Si 0.802 3.198 24 C -0.018 4.018 25 C -0.110 4.110 26 C -0.096 4.096 27 H 0.061 0.939 28 H 0.133 0.867 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.165 0.835 33 H 0.118 0.882 34 H 0.401 0.599 35 H -0.254 1.254 36 H -0.308 1.308 37 H 0.215 0.785 38 H 0.230 0.770 39 H 0.163 0.837 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 -16.465 -8.909 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.304 3.696 4 O -0.433 6.433 5 C -0.103 4.103 6 H 0.208 0.792 7 C -0.147 4.147 8 C -0.725 4.725 9 H 0.238 0.762 10 S 2.675 3.325 11 O -0.952 6.952 12 O -0.985 6.985 13 O -0.613 6.613 14 C 0.074 3.926 15 C -0.144 4.144 16 N 0.545 4.455 17 O -0.368 6.368 18 O -0.417 6.417 19 C -0.038 4.038 20 C -0.097 4.097 21 C -0.198 4.198 22 O -0.362 6.362 23 Si 0.704 3.296 24 C -0.035 4.035 25 C -0.129 4.129 26 C -0.135 4.135 27 H 0.080 0.920 28 H 0.151 0.849 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.182 0.818 33 H 0.135 0.865 34 H 0.251 0.749 35 H -0.179 1.179 36 H -0.236 1.236 37 H 0.231 0.769 38 H 0.246 0.754 39 H 0.181 0.819 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.050 -15.825 -9.663 19.217 hybrid contribution -0.905 2.018 0.888 2.383 sum 4.145 -13.807 -8.774 16.876 Atomic orbital electron populations 1.23547 0.75164 1.05776 1.02309 1.86493 1.24558 1.32558 1.83339 1.24267 0.93057 0.81177 0.71130 1.90718 1.68146 1.37865 1.46619 1.22660 0.85468 0.99615 1.02543 0.79250 1.22856 0.93918 0.96846 1.01033 1.32198 1.10574 1.14326 1.15409 0.76174 1.06116 0.73822 0.76320 0.76247 1.93615 1.50331 1.84475 1.66803 1.93595 1.69113 1.53691 1.82149 1.85829 1.27249 1.83634 1.64571 1.18370 0.79700 0.96508 0.98069 1.21717 0.98642 0.91372 1.02692 1.43820 1.00068 1.01780 0.99788 1.94508 1.46791 1.30366 1.65086 1.94589 1.08937 1.84098 1.54085 1.21172 0.91477 0.98789 0.92336 1.20920 0.99040 0.93710 0.96078 1.25698 0.84219 1.12284 0.97626 1.86574 1.53441 1.48811 1.47365 0.93949 0.78614 0.80708 0.76351 1.21989 0.89872 0.96897 0.94785 1.22242 1.00787 0.95590 0.94300 1.22928 0.94842 1.00125 0.95565 0.92025 0.84933 0.92526 0.90296 0.84649 0.81784 0.86457 0.74851 1.17920 1.23583 0.76891 0.75396 0.81913 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.12 16 2 O -0.35 0.43 10.56 -51.31 -0.54 -0.12 16 3 C 0.46 0.34 7.49 71.24 0.53 0.88 16 4 O -0.54 -5.32 15.65 21.96 0.34 -4.97 16 5 C -0.08 0.77 4.26 -11.01 -0.05 0.72 16 6 H 0.19 -3.59 8.14 -2.38 -0.02 -3.61 16 7 C -0.11 0.61 6.99 31.12 0.22 0.82 16 8 C -0.61 5.63 3.81 31.12 0.12 5.74 16 9 H 0.22 -4.73 6.14 -2.39 -0.01 -4.75 16 10 S 2.57 17.27 4.50 -56.49 -0.25 17.01 16 11 O -0.95 -15.77 17.42 -118.57 -2.07 -17.83 16 12 O -0.99 -12.90 15.67 -117.31 -1.84 -14.74 16 13 O -0.66 -3.13 8.35 -58.49 -0.49 -3.62 16 14 C 0.12 -0.06 4.71 22.51 0.11 0.05 16 15 C -0.06 -0.33 6.18 36.48 0.23 -0.11 16 16 N 0.03 0.51 4.29 -46.25 -0.20 0.31 16 17 O -0.14 -2.42 18.46 18.89 0.35 -2.07 16 18 O -0.21 -4.63 16.17 26.76 0.43 -4.20 16 19 C -0.02 0.03 9.19 22.25 0.20 0.24 16 20 C -0.10 1.02 5.35 -19.85 -0.11 0.91 16 21 C -0.09 1.03 2.80 71.24 0.20 1.23 16 22 O -0.55 4.71 12.83 -148.98 -1.91 2.80 16 23 Si 0.80 -12.33 29.80 68.60 2.04 -10.29 16 24 C -0.02 0.33 8.66 22.25 0.19 0.52 16 25 C -0.11 1.64 8.53 22.37 0.19 1.83 16 26 C -0.10 1.01 7.19 31.12 0.22 1.24 16 27 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 28 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 29 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 30 H 0.08 0.15 7.40 -2.39 -0.02 0.13 16 31 H 0.14 -1.52 8.14 -2.39 -0.02 -1.54 16 32 H 0.16 -0.14 7.62 -2.91 -0.02 -0.16 16 33 H 0.12 -1.10 7.96 -2.39 -0.02 -1.12 16 34 H 0.40 -7.04 8.70 -74.06 -0.64 -7.69 16 35 H -0.25 3.56 7.11 99.48 0.71 4.26 16 36 H -0.31 1.38 7.11 99.48 0.71 2.09 16 37 H 0.21 -5.92 4.90 -2.91 -0.01 -5.93 16 38 H 0.23 -6.17 6.96 -2.91 -0.02 -6.19 16 39 H 0.16 -3.38 8.14 -2.39 -0.02 -3.40 16 40 H 0.09 -0.34 7.50 -2.39 -0.02 -0.36 16 Total: 0.00 -51.87 359.65 -0.35 -52.22 By element: Atomic # 1 Polarization: -30.22 SS G_CDS: 0.53 Total: -29.69 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 3.26 Total: 15.20 kcal Atomic # 7 Polarization: 0.51 SS G_CDS: -0.20 Total: 0.31 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -5.72 Total: -44.75 kcal Atomic # 14 Polarization: -12.33 SS G_CDS: 2.04 Total: -10.29 kcal Atomic # 16 Polarization: 17.27 SS G_CDS: -0.25 Total: 17.01 kcal Total: -51.87 -0.35 -52.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80028_13206342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.535 kcal (2) G-P(sol) polarization free energy of solvation -51.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds