Wall clock time and date at job start Mon Mar 8 2021 11:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.47299 * 2 1 4 4 C 1.86302 * 109.47189 * 240.00225 * 2 1 3 5 5 C 1.86302 * 109.47089 * 120.00236 * 2 1 3 6 6 C 1.53001 * 109.47129 * 59.99993 * 5 2 1 7 7 C 1.53005 * 109.46695 * 180.02562 * 6 5 2 8 8 S 1.81399 * 109.46491 * 179.97438 * 7 6 5 9 9 O 1.42099 * 110.54547 * 62.86891 * 8 7 6 10 10 O 1.42103 * 110.54258 * 286.11374 * 8 7 6 11 11 O 1.52203 * 104.44765 * 174.49290 * 8 7 6 12 12 C 1.35901 * 114.00198 * 75.31321 * 11 8 7 13 13 C 1.38702 * 120.05457 * 274.83414 * 12 11 8 14 14 C 1.38165 * 119.94367 * 180.02562 * 13 12 11 15 15 C 1.38247 * 120.05667 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.94533 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47263 * 244.99520 * 16 15 14 18 18 Si 1.86295 * 109.47272 * 4.99863 * 16 15 14 19 19 H 1.48502 * 109.47472 * 59.99866 * 18 16 15 20 20 H 1.48500 * 109.47427 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47041 * 299.99525 * 18 16 15 22 22 C 1.38291 * 120.10946 * 0.26399 * 15 14 13 23 23 C 1.38125 * 120.05310 * 359.46280 * 22 15 14 24 24 N 1.48003 * 120.02775 * 180.29305 * 23 22 15 25 25 O 1.21799 * 119.99834 * 5.43958 * 24 23 22 26 26 O 1.21797 * 119.99915 * 185.43416 * 24 23 22 27 27 H 1.09000 * 109.46611 * 299.99950 * 1 2 3 28 28 H 1.09001 * 109.46847 * 59.99651 * 1 2 3 29 29 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47089 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47455 * 299.99976 * 3 2 1 32 32 H 1.08996 * 109.46792 * 60.00258 * 3 2 1 33 33 H 1.09001 * 109.46679 * 299.99888 * 4 2 1 34 34 H 1.09001 * 109.47337 * 59.99783 * 4 2 1 35 35 H 1.08998 * 109.47205 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.46729 * 299.99470 * 5 2 1 37 37 H 1.09004 * 109.47172 * 180.02562 * 5 2 1 38 38 H 1.08996 * 109.47065 * 59.99787 * 6 5 2 39 39 H 1.08998 * 109.46930 * 300.00086 * 6 5 2 40 40 H 1.08994 * 109.47199 * 60.00013 * 7 6 5 41 41 H 1.09001 * 109.46646 * 299.99344 * 7 6 5 42 42 H 1.08001 * 120.03456 * 359.97438 * 13 12 11 43 43 H 1.08005 * 119.97748 * 179.97438 * 14 13 12 44 44 H 1.09006 * 109.47184 * 124.99905 * 16 15 14 45 45 H 0.96695 * 113.99908 * 179.97438 * 17 16 15 46 46 H 1.07996 * 119.97293 * 179.70710 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5211 7 6 2.4835 -3.0418 2.7707 8 16 1.8782 -4.7519 2.7709 9 8 2.3928 -5.4632 1.6536 10 8 0.4940 -4.7908 3.0900 11 8 2.5582 -5.3952 3.9710 12 6 2.0281 -5.0304 5.1680 13 6 2.4549 -3.8669 5.7911 14 6 1.9148 -3.4985 7.0082 15 6 0.9503 -4.2885 7.6054 16 6 0.3633 -3.8846 8.9333 17 8 0.7198 -4.8497 9.9251 18 14 1.0284 -2.2150 9.4241 19 1 0.6579 -1.2120 8.3935 20 1 0.4505 -1.8172 10.7329 21 1 2.5074 -2.2851 9.5375 22 6 0.5274 -5.4521 6.9891 23 6 1.0602 -5.8219 5.7696 24 7 0.6025 -7.0639 5.1074 25 8 -0.3130 -7.7081 5.5874 26 8 1.1414 -7.4417 4.0825 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5741 1.7564 0.0005 31 1 2.1208 2.2703 -0.8900 32 1 2.1208 2.2702 0.8900 33 1 2.1207 -1.9058 -1.5211 34 1 2.1207 -0.3644 -2.4112 35 1 3.5740 -0.8786 -1.5210 36 1 2.1207 -0.3644 2.4111 37 1 3.5741 -0.8779 1.5214 38 1 2.3373 -2.8346 0.6311 39 1 0.8840 -2.3208 1.5210 40 1 2.1199 -2.5279 3.6604 41 1 3.5735 -3.0419 2.7710 42 1 3.2093 -3.2500 5.3256 43 1 2.2470 -2.5929 7.4941 44 1 -0.7223 -3.8331 8.8501 45 1 0.3754 -4.6529 10.8070 46 1 -0.2228 -6.0701 7.4599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_80028_14927650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:05:47 Heat of formation + Delta-G solvation = -149.672230 kcal Electronic energy + Delta-G solvation = -31505.230614 eV Core-core repulsion = 27036.302284 eV Total energy + Delta-G solvation = -4468.928330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.106 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.56465 -42.21615 -40.40190 -38.40737 -37.90362 -37.47230 -37.27035 -36.16803 -33.72157 -32.95642 -29.83883 -28.66656 -28.50721 -28.48161 -27.93377 -27.53411 -24.65205 -23.73341 -22.99360 -22.08105 -20.22394 -19.89364 -19.54659 -19.13228 -18.96490 -18.61944 -18.32606 -17.55331 -17.24826 -16.89635 -16.19661 -16.13547 -15.81009 -15.20884 -15.16161 -14.97424 -14.53727 -14.45767 -14.35002 -14.27034 -14.17702 -13.82725 -13.76763 -13.73430 -13.48106 -13.36157 -13.33567 -13.25606 -13.25173 -13.19817 -13.18590 -12.95472 -12.53871 -12.45227 -12.22819 -12.15146 -12.14456 -12.05459 -12.03323 -11.19136 -10.94835 -10.92728 -10.90179 -10.71600 -10.57675 -1.70759 -1.17526 -0.69885 0.08554 0.16867 0.66244 0.70565 1.05326 1.12174 1.52208 1.53178 1.59889 1.73788 1.75279 2.37473 2.50723 2.56221 2.60335 2.74322 2.97321 3.05886 3.23367 3.32446 3.37367 3.41416 3.72190 3.83128 3.85179 4.02233 4.06790 4.07436 4.27705 4.30687 4.43393 4.50546 4.61332 4.62600 4.66522 4.66658 4.69147 4.70325 4.71163 4.76145 5.09769 5.29697 5.37298 5.45591 5.49056 6.16914 6.61315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.003 2.997 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.406 4.406 6 C -0.102 4.102 7 C -0.652 4.652 8 S 2.582 3.418 9 O -0.899 6.899 10 O -0.947 6.947 11 O -0.650 6.650 12 C 0.146 3.854 13 C -0.133 4.133 14 C -0.055 4.055 15 C -0.058 4.058 16 C -0.089 4.089 17 O -0.541 6.541 18 Si 0.940 3.060 19 H -0.242 1.242 20 H -0.243 1.243 21 H -0.241 1.241 22 C -0.007 4.007 23 C -0.023 4.023 24 N 0.031 4.969 25 O -0.130 6.130 26 O -0.149 6.149 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.171 0.829 43 H 0.157 0.843 44 H 0.093 0.907 45 H 0.390 0.610 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.968 9.800 6.000 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.199 2.801 3 C -0.557 4.557 4 C -0.562 4.562 5 C -0.492 4.492 6 C -0.141 4.141 7 C -0.779 4.779 8 S 2.677 3.323 9 O -0.897 6.897 10 O -0.946 6.946 11 O -0.607 6.607 12 C 0.102 3.898 13 C -0.153 4.153 14 C -0.073 4.073 15 C -0.060 4.060 16 C -0.199 4.199 17 O -0.349 6.349 18 Si 0.760 3.240 19 H -0.165 1.165 20 H -0.166 1.166 21 H -0.164 1.164 22 C -0.026 4.026 23 C -0.108 4.108 24 N 0.554 4.446 25 O -0.351 6.351 26 O -0.364 6.364 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.188 0.812 43 H 0.174 0.826 44 H 0.111 0.889 45 H 0.239 0.761 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.678 10.180 5.815 11.843 hybrid contribution -0.109 -0.042 0.161 0.199 sum 1.569 10.139 5.976 11.873 Atomic orbital electron populations 1.26182 1.20679 1.04637 1.04636 0.79318 0.67269 0.67027 0.66449 1.26101 1.06252 1.18758 1.04540 1.26183 1.06403 1.08244 1.15358 1.26175 1.06374 1.00199 1.16421 1.21002 1.01706 0.97073 0.94280 1.31055 1.13977 1.23895 1.09021 1.06057 0.74665 0.77288 0.74261 1.93683 1.79740 1.68721 1.47534 1.93661 1.32955 1.86231 1.81730 1.85879 1.71244 1.77098 1.26498 1.17652 0.92859 0.94383 0.84893 1.21461 1.01742 0.95296 0.96805 1.21370 0.92761 0.99571 0.93581 1.19495 0.96496 0.94008 0.95989 1.24820 1.03390 1.04190 0.87462 1.86493 1.78444 1.48892 1.21027 0.85819 0.81709 0.74138 0.82354 1.16518 1.16642 1.16427 1.20994 0.96759 0.95234 0.89617 1.21319 1.01817 0.90154 0.97529 1.43185 0.99793 1.01110 1.00514 1.94565 1.19797 1.53795 1.66990 1.94608 1.57423 1.72560 1.11836 0.91193 0.91014 0.91115 0.91225 0.91077 0.91286 0.91037 0.91036 0.91104 0.90021 0.89844 0.89469 0.89916 0.84580 0.83730 0.81190 0.82615 0.88916 0.76109 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.96 8.65 101.05 0.87 1.83 16 2 Si 1.00 -3.58 12.19 -169.99 -2.07 -5.66 16 3 C -0.45 1.13 8.65 101.05 0.87 2.00 16 4 C -0.45 0.86 8.65 101.05 0.87 1.73 16 5 C -0.41 1.46 4.45 37.16 0.17 1.62 16 6 C -0.10 0.22 4.59 -26.73 -0.12 0.09 16 7 C -0.65 1.69 5.12 37.16 0.19 1.88 16 8 S 2.58 7.11 4.63 -107.50 -0.50 6.61 16 9 O -0.90 -5.57 18.09 -67.04 -1.21 -6.78 16 10 O -0.95 -4.76 15.87 -67.99 -1.08 -5.83 16 11 O -0.65 -1.86 8.32 -54.89 -0.46 -2.31 16 12 C 0.15 0.22 4.70 -39.22 -0.18 0.03 16 13 C -0.13 0.37 8.47 -39.44 -0.33 0.04 16 14 C -0.06 0.20 8.66 -39.60 -0.34 -0.15 16 15 C -0.06 0.13 5.39 -104.60 -0.56 -0.43 16 16 C -0.09 0.39 2.79 36.00 0.10 0.49 16 17 O -0.54 1.87 12.81 -35.23 -0.45 1.42 16 18 Si 0.94 -4.57 25.13 -169.99 -4.27 -8.85 16 19 H -0.24 1.16 7.11 56.52 0.40 1.56 16 20 H -0.24 1.02 7.11 56.52 0.40 1.42 16 21 H -0.24 0.96 7.04 56.52 0.40 1.36 16 22 C -0.01 0.00 9.19 -39.60 -0.36 -0.36 16 23 C -0.02 -0.07 6.24 -79.81 -0.50 -0.57 16 24 N 0.03 0.20 4.35 34.03 0.15 0.35 16 25 O -0.13 -0.82 18.46 -29.46 -0.54 -1.37 16 26 O -0.15 -1.26 16.29 -37.36 -0.61 -1.87 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.13 7.79 -51.93 -0.40 -0.54 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 33 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.08 -0.37 7.96 -51.93 -0.41 -0.78 16 37 H 0.08 -0.35 7.96 -51.93 -0.41 -0.77 16 38 H 0.09 -0.21 7.79 -51.93 -0.40 -0.62 16 39 H 0.08 -0.23 7.79 -51.93 -0.40 -0.64 16 40 H 0.14 -0.73 6.61 -51.93 -0.34 -1.07 16 41 H 0.14 -0.73 8.14 -51.92 -0.42 -1.15 16 42 H 0.17 -1.16 7.07 -52.49 -0.37 -1.53 16 43 H 0.16 -0.99 4.86 -52.48 -0.25 -1.24 16 44 H 0.09 -0.58 7.96 -51.93 -0.41 -1.00 16 45 H 0.39 -3.00 8.74 45.56 0.40 -2.60 16 46 H 0.17 -0.21 7.62 -52.49 -0.40 -0.61 16 LS Contribution 396.78 15.07 5.98 5.98 Total: 0.00 -12.42 396.78 -10.34 -22.76 By element: Atomic # 1 Polarization: -6.72 SS G_CDS: -5.95 Total: -12.67 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 0.67 Total: 8.22 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: 0.15 Total: 0.35 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -4.35 Total: -16.75 kcal Atomic # 14 Polarization: -8.16 SS G_CDS: -6.34 Total: -14.50 kcal Atomic # 16 Polarization: 7.11 SS G_CDS: -0.50 Total: 6.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -12.42 -10.34 -22.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80028_14927650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.909 kcal (2) G-P(sol) polarization free energy of solvation -12.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds