Wall clock time and date at job start Mon Mar 8 2021 11:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86301 * 109.47299 * 2 1 4 4 C 1.86302 * 109.47189 * 240.00225 * 2 1 3 5 5 C 1.86302 * 109.47089 * 120.00236 * 2 1 3 6 6 C 1.53001 * 109.47129 * 59.99993 * 5 2 1 7 7 C 1.53005 * 109.46695 * 180.02562 * 6 5 2 8 8 S 1.81399 * 109.46491 * 179.97438 * 7 6 5 9 9 O 1.42099 * 110.54547 * 62.86891 * 8 7 6 10 10 O 1.42103 * 110.54258 * 286.11374 * 8 7 6 11 11 O 1.52203 * 104.44765 * 174.49290 * 8 7 6 12 12 C 1.35901 * 114.00198 * 75.31321 * 11 8 7 13 13 C 1.38702 * 120.05457 * 274.83414 * 12 11 8 14 14 C 1.38165 * 119.94367 * 180.02562 * 13 12 11 15 15 C 1.38247 * 120.05667 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.94533 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47263 * 244.99520 * 16 15 14 18 18 Si 1.86295 * 109.47272 * 4.99863 * 16 15 14 19 19 H 1.48502 * 109.47472 * 59.99866 * 18 16 15 20 20 H 1.48500 * 109.47427 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47041 * 299.99525 * 18 16 15 22 22 C 1.38291 * 120.10946 * 0.26399 * 15 14 13 23 23 C 1.38125 * 120.05310 * 359.46280 * 22 15 14 24 24 N 1.48003 * 120.02775 * 180.29305 * 23 22 15 25 25 O 1.21799 * 119.99834 * 5.43958 * 24 23 22 26 26 O 1.21797 * 119.99915 * 185.43416 * 24 23 22 27 27 H 1.09000 * 109.46611 * 299.99950 * 1 2 3 28 28 H 1.09001 * 109.46847 * 59.99651 * 1 2 3 29 29 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47089 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47455 * 299.99976 * 3 2 1 32 32 H 1.08996 * 109.46792 * 60.00258 * 3 2 1 33 33 H 1.09001 * 109.46679 * 299.99888 * 4 2 1 34 34 H 1.09001 * 109.47337 * 59.99783 * 4 2 1 35 35 H 1.08998 * 109.47205 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.46729 * 299.99470 * 5 2 1 37 37 H 1.09004 * 109.47172 * 180.02562 * 5 2 1 38 38 H 1.08996 * 109.47065 * 59.99787 * 6 5 2 39 39 H 1.08998 * 109.46930 * 300.00086 * 6 5 2 40 40 H 1.08994 * 109.47199 * 60.00013 * 7 6 5 41 41 H 1.09001 * 109.46646 * 299.99344 * 7 6 5 42 42 H 1.08001 * 120.03456 * 359.97438 * 13 12 11 43 43 H 1.08005 * 119.97748 * 179.97438 * 14 13 12 44 44 H 1.09006 * 109.47184 * 124.99905 * 16 15 14 45 45 H 0.96695 * 113.99908 * 179.97438 * 17 16 15 46 46 H 1.07996 * 119.97293 * 179.70710 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5211 7 6 2.4835 -3.0418 2.7707 8 16 1.8782 -4.7519 2.7709 9 8 2.3928 -5.4632 1.6536 10 8 0.4940 -4.7908 3.0900 11 8 2.5582 -5.3952 3.9710 12 6 2.0281 -5.0304 5.1680 13 6 2.4549 -3.8669 5.7911 14 6 1.9148 -3.4985 7.0082 15 6 0.9503 -4.2885 7.6054 16 6 0.3633 -3.8846 8.9333 17 8 0.7198 -4.8497 9.9251 18 14 1.0284 -2.2150 9.4241 19 1 0.6579 -1.2120 8.3935 20 1 0.4505 -1.8172 10.7329 21 1 2.5074 -2.2851 9.5375 22 6 0.5274 -5.4521 6.9891 23 6 1.0602 -5.8219 5.7696 24 7 0.6025 -7.0639 5.1074 25 8 -0.3130 -7.7081 5.5874 26 8 1.1414 -7.4417 4.0825 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5741 1.7564 0.0005 31 1 2.1208 2.2703 -0.8900 32 1 2.1208 2.2702 0.8900 33 1 2.1207 -1.9058 -1.5211 34 1 2.1207 -0.3644 -2.4112 35 1 3.5740 -0.8786 -1.5210 36 1 2.1207 -0.3644 2.4111 37 1 3.5741 -0.8779 1.5214 38 1 2.3373 -2.8346 0.6311 39 1 0.8840 -2.3208 1.5210 40 1 2.1199 -2.5279 3.6604 41 1 3.5735 -3.0419 2.7710 42 1 3.2093 -3.2500 5.3256 43 1 2.2470 -2.5929 7.4941 44 1 -0.7223 -3.8331 8.8501 45 1 0.3754 -4.6529 10.8070 46 1 -0.2228 -6.0701 7.4599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80028_14927650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:05:46 Heat of formation + Delta-G solvation = -151.138721 kcal Electronic energy + Delta-G solvation = -31505.294206 eV Core-core repulsion = 27036.302284 eV Total energy + Delta-G solvation = -4468.991922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.106 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.78309 -42.36492 -40.29223 -38.61179 -37.91069 -37.59721 -37.46231 -35.94680 -33.69421 -32.78654 -29.62576 -28.43802 -28.31213 -28.26041 -28.13903 -27.32547 -24.53357 -23.77442 -22.78526 -22.09445 -20.35302 -20.16045 -19.63772 -19.26394 -18.83744 -18.63988 -18.44855 -17.42864 -17.15825 -16.67961 -16.00541 -15.84362 -15.76332 -15.05357 -14.96426 -14.75647 -14.35933 -14.27535 -14.16168 -14.02393 -13.97606 -13.84097 -13.63743 -13.59640 -13.49346 -13.45986 -13.33487 -13.15011 -13.06259 -13.04049 -13.01222 -12.97397 -12.70693 -12.56242 -12.42395 -11.98787 -11.92774 -11.83757 -11.83117 -11.08842 -10.72548 -10.68883 -10.68471 -10.43860 -10.29850 -1.82010 -1.22309 -0.60697 -0.12221 -0.00643 0.65373 1.10505 1.49527 1.56887 1.67749 1.91095 1.96313 1.99889 2.02975 2.35173 2.56991 2.73301 2.74101 2.93023 3.12408 3.27418 3.44146 3.53642 3.62312 3.79459 3.90286 4.08134 4.13321 4.26402 4.32997 4.40595 4.43232 4.55873 4.59452 4.76613 4.80505 4.81757 4.83118 4.86129 4.87449 4.88438 4.89556 5.04078 5.10108 5.45947 5.60747 5.66338 5.68114 6.13249 6.75291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.069 2.931 3 C -0.461 4.461 4 C -0.480 4.480 5 C -0.404 4.404 6 C -0.124 4.124 7 C -0.616 4.616 8 S 2.559 3.441 9 O -0.957 6.957 10 O -0.986 6.986 11 O -0.662 6.662 12 C 0.119 3.881 13 C -0.115 4.115 14 C -0.040 4.040 15 C -0.058 4.058 16 C -0.097 4.097 17 O -0.563 6.563 18 Si 0.973 3.027 19 H -0.233 1.233 20 H -0.256 1.256 21 H -0.247 1.247 22 C -0.013 4.013 23 C -0.056 4.056 24 N 0.031 4.969 25 O -0.135 6.135 26 O -0.213 6.213 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.177 0.823 41 H 0.182 0.818 42 H 0.220 0.780 43 H 0.195 0.805 44 H 0.111 0.889 45 H 0.406 0.594 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 13.791 8.510 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.261 2.739 3 C -0.568 4.568 4 C -0.585 4.585 5 C -0.491 4.491 6 C -0.163 4.163 7 C -0.748 4.748 8 S 2.661 3.339 9 O -0.955 6.955 10 O -0.985 6.985 11 O -0.620 6.620 12 C 0.076 3.924 13 C -0.135 4.135 14 C -0.057 4.057 15 C -0.060 4.060 16 C -0.206 4.206 17 O -0.374 6.374 18 Si 0.793 3.207 19 H -0.155 1.155 20 H -0.180 1.180 21 H -0.171 1.171 22 C -0.032 4.032 23 C -0.142 4.142 24 N 0.547 4.453 25 O -0.360 6.360 26 O -0.416 6.416 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.195 0.805 41 H 0.199 0.801 42 H 0.237 0.763 43 H 0.211 0.789 44 H 0.128 0.872 45 H 0.258 0.742 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.118 14.081 8.223 16.602 hybrid contribution -0.615 -1.132 -0.457 1.366 sum 2.504 12.950 7.765 15.306 Atomic orbital electron populations 1.26466 1.22964 1.04176 1.04541 0.78306 0.64849 0.65564 0.65191 1.26245 1.06539 1.19548 1.04445 1.26520 1.06721 1.08268 1.16988 1.26160 1.07567 0.98428 1.16937 1.21270 1.02345 0.98281 0.94385 1.30873 1.16063 1.17159 1.10751 1.06560 0.74112 0.79782 0.73417 1.93600 1.80186 1.71948 1.49790 1.93596 1.35365 1.87653 1.81853 1.85824 1.70768 1.78303 1.27069 1.18216 0.93438 0.95929 0.84856 1.22082 1.01450 0.93487 0.96483 1.21903 0.90970 1.00008 0.92814 1.19919 0.96381 0.92906 0.96753 1.25093 1.04675 1.04590 0.86206 1.86449 1.78917 1.49695 1.22304 0.85358 0.80720 0.72831 0.81809 1.15534 1.18020 1.17074 1.21201 0.96875 0.96385 0.88737 1.21670 1.04281 0.89194 0.99045 1.43715 0.99221 1.02187 1.00171 1.94495 1.19986 1.54936 1.66583 1.94594 1.58793 1.74382 1.13789 0.90652 0.91800 0.91771 0.90940 0.91904 0.90719 0.91809 0.91800 0.90938 0.87707 0.88098 0.89898 0.89704 0.80541 0.80063 0.76304 0.78855 0.87156 0.74172 0.80683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 2.07 8.65 113.37 0.98 3.05 16 2 Si 1.07 -9.04 12.19 68.60 0.84 -8.20 16 3 C -0.46 3.06 8.65 113.37 0.98 4.04 16 4 C -0.48 1.60 8.65 113.37 0.98 2.58 16 5 C -0.40 4.39 4.45 71.98 0.32 4.71 16 6 C -0.12 0.76 4.59 30.60 0.14 0.90 16 7 C -0.62 4.97 5.12 71.98 0.37 5.34 16 8 S 2.56 18.06 4.63 -56.49 -0.26 17.80 16 9 O -0.96 -15.28 18.09 -118.57 -2.15 -17.43 16 10 O -0.99 -12.59 15.87 -117.66 -1.87 -14.46 16 11 O -0.66 -4.80 8.32 -58.53 -0.49 -5.29 16 12 C 0.12 0.37 4.70 22.50 0.11 0.48 16 13 C -0.12 1.03 8.47 22.36 0.19 1.22 16 14 C -0.04 0.43 8.66 22.25 0.19 0.62 16 15 C -0.06 0.37 5.39 -19.85 -0.11 0.26 16 16 C -0.10 1.06 2.79 71.23 0.20 1.26 16 17 O -0.56 4.61 12.81 -148.98 -1.91 2.71 16 18 Si 0.97 -12.73 25.13 68.60 1.72 -11.00 16 19 H -0.23 3.31 7.11 99.48 0.71 4.02 16 20 H -0.26 2.74 7.11 99.48 0.71 3.45 16 21 H -0.25 2.93 7.04 99.48 0.70 3.63 16 22 C -0.01 -0.01 9.19 22.26 0.20 0.20 16 23 C -0.06 -0.45 6.24 36.47 0.23 -0.22 16 24 N 0.03 0.53 4.35 -46.24 -0.20 0.33 16 25 O -0.13 -2.22 18.46 18.89 0.35 -1.87 16 26 O -0.21 -4.71 16.29 26.45 0.43 -4.28 16 27 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 28 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 29 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 30 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 31 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 32 H 0.07 -0.56 7.96 -2.39 -0.02 -0.58 16 33 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 34 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 35 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 36 H 0.10 -1.52 7.96 -2.39 -0.02 -1.54 16 37 H 0.10 -1.35 7.96 -2.38 -0.02 -1.37 16 38 H 0.08 -0.42 7.79 -2.39 -0.02 -0.44 16 39 H 0.08 -0.55 7.79 -2.39 -0.02 -0.57 16 40 H 0.18 -2.83 6.61 -2.39 -0.02 -2.85 16 41 H 0.18 -2.68 8.14 -2.39 -0.02 -2.70 16 42 H 0.22 -4.32 7.07 -2.91 -0.02 -4.34 16 43 H 0.19 -3.55 4.86 -2.91 -0.01 -3.56 16 44 H 0.11 -1.61 7.96 -2.38 -0.02 -1.62 16 45 H 0.41 -6.74 8.74 -74.06 -0.65 -7.39 16 46 H 0.18 -0.16 7.62 -2.91 -0.02 -0.18 16 Total: 0.00 -37.95 396.78 2.36 -35.59 By element: Atomic # 1 Polarization: -19.45 SS G_CDS: 1.11 Total: -18.34 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 4.78 Total: 24.44 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -0.20 Total: 0.33 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -5.63 Total: -40.62 kcal Atomic # 14 Polarization: -21.77 SS G_CDS: 2.56 Total: -19.21 kcal Atomic # 16 Polarization: 18.06 SS G_CDS: -0.26 Total: 17.80 kcal Total: -37.95 2.36 -35.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80028_14927650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.551 kcal (2) G-P(sol) polarization free energy of solvation -37.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds