Wall clock time and date at job start Mon Mar 8 2021 11:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86294 * 109.47276 * 2 1 4 4 C 1.50703 * 109.47171 * 120.00397 * 2 1 3 5 5 C 1.38242 * 119.94654 * 64.72618 * 4 2 1 6 6 C 1.38166 * 120.05297 * 179.72754 * 5 4 2 7 7 N 1.48006 * 120.02771 * 180.27774 * 6 5 4 8 8 O 1.21798 * 119.99698 * 359.17107 * 7 6 5 9 9 O 1.21799 * 120.00245 * 179.18360 * 7 6 5 10 10 C 1.38712 * 119.94447 * 0.54004 * 6 5 4 11 11 O 1.35899 * 120.05386 * 179.70464 * 10 6 5 12 12 S 1.52204 * 113.99783 * 92.78269 * 11 10 6 13 13 O 1.42099 * 104.27572 * 191.70732 * 12 11 10 14 14 O 1.42100 * 104.27577 * 319.56930 * 12 11 10 15 15 C 1.81396 * 104.44837 * 75.63594 * 12 11 10 16 16 H 1.09009 * 112.85232 * 44.80924 * 15 12 11 17 17 C 1.53781 * 113.61437 * 176.00597 * 15 12 11 18 18 C 1.53784 * 87.08129 * 139.98240 * 17 15 12 19 19 H 1.08997 * 113.61325 * 219.93060 * 18 17 15 20 20 O 1.42898 * 113.61534 * 89.11797 * 18 17 15 21 21 C 1.42903 * 114.00127 * 149.99935 * 20 18 17 22 22 C 1.50701 * 109.47165 * 179.97438 * 21 20 18 23 23 C 1.38236 * 120.00090 * 269.72957 * 22 21 20 24 24 C 1.38231 * 119.99981 * 179.79026 * 23 22 21 25 25 C 1.38242 * 119.99880 * 0.43550 * 24 23 22 26 26 C 1.38233 * 119.99906 * 359.81272 * 25 24 23 27 27 C 1.38233 * 119.99735 * 89.99950 * 22 21 20 28 28 C 1.53777 * 87.08164 * 334.56539 * 18 17 15 29 29 C 1.38750 * 119.88579 * 359.73302 * 10 6 5 30 30 C 1.38115 * 119.94697 * 359.97438 * 29 10 6 31 31 H 0.96706 * 113.99727 * 299.99828 * 1 2 3 32 32 H 1.09000 * 109.46893 * 239.99958 * 2 1 3 33 33 H 1.48509 * 109.99875 * 300.00320 * 3 2 1 34 34 H 1.48498 * 110.00194 * 61.31844 * 3 2 1 35 35 H 1.08007 * 119.97229 * 359.97438 * 5 4 2 36 36 H 1.09008 * 113.61527 * 254.52767 * 17 15 12 37 37 H 1.08992 * 113.61318 * 25.43168 * 17 15 12 38 38 H 1.08994 * 109.46857 * 299.99590 * 21 20 18 39 39 H 1.08996 * 109.46713 * 59.99784 * 21 20 18 40 40 H 1.08001 * 120.00092 * 359.97438 * 23 22 21 41 41 H 1.07999 * 120.00120 * 180.27106 * 24 23 22 42 42 H 1.08004 * 119.99811 * 179.83651 * 25 24 23 43 43 H 1.08005 * 119.99460 * 179.97438 * 26 25 24 44 44 H 1.07995 * 120.00603 * 359.97438 * 27 22 21 45 45 H 1.08998 * 113.61897 * 270.88564 * 28 18 17 46 46 H 1.09005 * 113.61162 * 139.98126 * 28 18 17 47 47 H 1.08004 * 120.02562 * 180.02562 * 29 10 6 48 48 H 1.08005 * 119.97074 * 180.02562 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6792 -2.0591 1.3998 6 6 2.1436 -2.7140 2.5243 7 7 1.8786 -4.1592 2.7022 8 8 1.2380 -4.7685 1.8644 9 8 2.3009 -4.7393 3.6864 10 6 2.8536 -2.0146 3.4891 11 8 3.3062 -2.6552 4.5989 12 16 4.7260 -3.1883 4.4702 13 8 4.8848 -4.0381 5.5979 14 8 4.7875 -3.7059 3.1482 15 6 5.7774 -1.7185 4.6277 16 1 5.4706 -1.0640 5.4436 17 6 7.2824 -2.0344 4.6241 18 6 7.4638 -0.7795 3.7539 19 1 8.1945 -0.9042 2.9548 20 8 7.6663 0.4165 4.5092 21 6 8.4688 1.3946 3.8449 22 6 8.6155 2.6075 4.7273 23 6 7.7020 3.6412 4.6388 24 6 7.8341 4.7518 5.4512 25 6 8.8849 4.8326 6.3459 26 6 9.8013 3.8011 6.4308 27 6 9.6667 2.6887 5.6213 28 6 6.0091 -0.9814 3.2980 29 6 3.1005 -0.6598 3.3194 30 6 2.6393 -0.0111 2.1906 31 1 -0.3933 0.4417 0.7651 32 1 1.7923 -0.5138 -0.8900 33 1 1.5614 2.4679 -1.2085 34 1 1.5879 2.4585 1.2242 35 1 1.1222 -2.6022 0.6506 36 1 7.7476 -1.9553 5.6068 37 1 7.5325 -2.9623 4.1099 38 1 9.4531 0.9758 3.6359 39 1 7.9901 1.6824 2.9090 40 1 6.8834 3.5799 3.9370 41 1 7.1180 5.5574 5.3852 42 1 8.9896 5.7014 6.9788 43 1 10.6224 3.8645 7.1295 44 1 10.3827 1.8829 5.6877 45 1 5.9111 -1.6214 2.4212 46 1 5.4461 -0.0521 3.2101 47 1 3.6534 -0.1131 4.0689 48 1 2.8316 1.0434 2.0579 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80028_15608174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:48:53 Heat of formation + Delta-G solvation = -73.440766 kcal Electronic energy + Delta-G solvation = -39818.194323 eV Core-core repulsion = 34517.427846 eV Total energy + Delta-G solvation = -5300.766477 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.105 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.77041 -42.34885 -40.76731 -40.34880 -39.90154 -38.59853 -37.91579 -37.72572 -37.45110 -36.99208 -33.63707 -32.73231 -32.58359 -31.74767 -28.12536 -27.55836 -27.31769 -27.03011 -26.46623 -24.37093 -23.77421 -23.44106 -22.34713 -22.21336 -21.10743 -20.41980 -20.13577 -19.76734 -19.21292 -18.97881 -18.60571 -18.42014 -17.85196 -17.44886 -17.28485 -16.87207 -16.57739 -16.43337 -16.38921 -16.01166 -15.94820 -15.51691 -15.28486 -14.99657 -14.94911 -14.62231 -14.60472 -14.24061 -14.14950 -13.87454 -13.81163 -13.66379 -13.64903 -13.58106 -13.50543 -13.39771 -13.30358 -13.12737 -13.02166 -12.56093 -12.54923 -12.42727 -12.09196 -12.04661 -11.82672 -11.81345 -11.69826 -11.27937 -11.04234 -10.83240 -10.58553 -10.42199 -9.78305 -9.72508 -4.90010 -1.80070 -1.18420 -0.57701 -0.09309 0.02546 0.37032 0.54011 0.67456 1.22605 1.62449 1.70006 2.06918 2.28262 2.45000 2.55185 2.73732 2.94155 2.99269 3.09979 3.15819 3.26563 3.35044 3.46649 3.49477 3.50844 3.80008 3.91633 3.98763 4.01267 4.17503 4.19754 4.28870 4.30035 4.34036 4.42214 4.43871 4.45424 4.49463 4.54908 4.61531 4.65657 4.71906 4.78197 4.80572 4.83273 4.86109 4.88759 5.08178 5.13051 5.19887 5.58818 5.66651 5.69235 6.12239 6.13462 6.25593 6.44036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.096 4.096 3 Si 0.789 3.211 4 C -0.089 4.089 5 C -0.015 4.015 6 C -0.054 4.054 7 N 0.033 4.967 8 O -0.138 6.138 9 O -0.219 6.219 10 C 0.123 3.877 11 O -0.666 6.666 12 S 2.579 3.421 13 O -0.966 6.966 14 O -0.973 6.973 15 C -0.612 4.612 16 H 0.187 0.813 17 C -0.124 4.124 18 C 0.087 3.913 19 H 0.114 0.886 20 O -0.370 6.370 21 C 0.099 3.901 22 C -0.105 4.105 23 C -0.104 4.104 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.116 4.116 28 C -0.139 4.139 29 C -0.110 4.110 30 C -0.025 4.025 31 H 0.391 0.609 32 H 0.139 0.861 33 H -0.307 1.307 34 H -0.254 1.254 35 H 0.169 0.831 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.136 0.864 47 H 0.210 0.790 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 14.949 -4.855 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.203 4.203 3 Si 0.690 3.310 4 C -0.091 4.091 5 C -0.034 4.034 6 C -0.140 4.140 7 N 0.548 4.452 8 O -0.363 6.363 9 O -0.421 6.421 10 C 0.080 3.920 11 O -0.624 6.624 12 S 2.681 3.319 13 O -0.964 6.964 14 O -0.971 6.971 15 C -0.725 4.725 16 H 0.204 0.796 17 C -0.163 4.163 18 C 0.028 3.972 19 H 0.131 0.869 20 O -0.289 6.289 21 C 0.024 3.976 22 C -0.106 4.106 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.147 4.147 26 C -0.158 4.158 27 C -0.134 4.134 28 C -0.177 4.177 29 C -0.130 4.130 30 C -0.042 4.042 31 H 0.242 0.758 32 H 0.157 0.843 33 H -0.235 1.235 34 H -0.179 1.179 35 H 0.187 0.813 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.168 0.832 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.154 0.846 47 H 0.227 0.773 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.999 15.359 -5.041 16.920 hybrid contribution -1.049 -1.305 1.155 2.034 sum 3.951 14.053 -3.886 15.106 Atomic orbital electron populations 1.86677 1.17872 1.80447 1.50409 1.25672 0.84013 1.13324 0.97242 0.94194 0.89075 0.69681 0.78006 1.20755 0.97968 0.91630 0.98701 1.21173 0.93753 0.95440 0.93039 1.21643 1.10981 0.79688 1.01686 1.43771 0.97967 1.04130 0.99367 1.94502 1.36685 1.67877 1.37244 1.94576 1.55514 1.70653 1.21309 1.18223 0.99107 0.92693 0.81986 1.85806 1.54568 1.76486 1.45540 1.06070 0.74095 0.78106 0.73606 1.93577 1.83793 1.65164 1.53847 1.93585 1.84555 1.78873 1.40111 1.32192 1.10887 1.17741 1.11636 0.79605 1.23118 0.88669 0.99985 1.04568 1.22768 0.96618 0.84143 0.93707 0.86853 1.87959 1.71352 1.25906 1.43720 1.21568 0.95716 0.85997 0.94348 1.19835 0.96127 0.95948 0.98644 1.21402 0.98591 0.92960 0.99214 1.21498 0.98520 0.99042 0.96243 1.21518 0.95091 0.99171 0.98926 1.21420 1.00055 0.94422 0.99936 1.21327 0.98452 0.98180 0.95463 1.23754 0.99204 1.02777 0.91954 1.22063 1.01157 0.88577 1.01205 1.21940 0.90328 1.02704 0.89195 0.75843 0.84323 1.23535 1.17910 0.81331 0.88044 0.87180 0.91405 0.89182 0.83245 0.84288 0.85083 0.85264 0.85450 0.86037 0.84608 0.77287 0.77631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.56 12.83 -148.98 -1.91 1.65 16 2 C -0.10 1.11 2.80 71.24 0.20 1.31 16 3 Si 0.79 -11.69 29.88 68.60 2.05 -9.64 16 4 C -0.09 0.93 5.35 -19.85 -0.11 0.83 16 5 C -0.01 0.03 9.18 22.25 0.20 0.24 16 6 C -0.05 -0.30 6.17 36.47 0.23 -0.08 16 7 N 0.03 0.52 4.32 -46.24 -0.20 0.32 16 8 O -0.14 -2.17 18.45 18.89 0.35 -1.82 16 9 O -0.22 -4.71 15.65 27.76 0.43 -4.27 16 10 C 0.12 0.14 4.67 22.51 0.11 0.25 16 11 O -0.67 -4.68 8.45 -58.49 -0.49 -5.17 16 12 S 2.58 18.21 4.45 -56.49 -0.25 17.96 16 13 O -0.97 -16.69 18.09 -118.57 -2.15 -18.84 16 14 O -0.97 -10.39 14.38 -116.27 -1.67 -12.06 16 15 C -0.61 3.53 3.50 31.12 0.11 3.64 16 16 H 0.19 -1.85 8.14 -2.38 -0.02 -1.87 16 17 C -0.12 0.73 7.50 31.12 0.23 0.96 16 18 C 0.09 -0.89 4.37 31.12 0.14 -0.75 16 19 H 0.11 -1.59 7.87 -2.39 -0.02 -1.61 16 20 O -0.37 2.63 10.26 -148.98 -1.53 1.10 16 21 C 0.10 -0.91 5.90 71.24 0.42 -0.49 16 22 C -0.11 0.47 5.51 -19.87 -0.11 0.36 16 23 C -0.10 0.60 9.70 22.27 0.22 0.82 16 24 C -0.14 0.56 10.05 22.27 0.22 0.78 16 25 C -0.13 0.28 10.05 22.27 0.22 0.50 16 26 C -0.14 0.19 10.05 22.27 0.22 0.41 16 27 C -0.12 0.23 9.70 22.27 0.22 0.45 16 28 C -0.14 1.69 5.78 31.12 0.18 1.87 16 29 C -0.11 1.25 7.02 22.36 0.16 1.41 16 30 C -0.02 0.39 8.66 22.25 0.19 0.58 16 31 H 0.39 -5.04 8.70 -74.05 -0.64 -5.69 16 32 H 0.14 -1.79 7.96 -2.39 -0.02 -1.80 16 33 H -0.31 1.29 7.11 99.48 0.71 2.00 16 34 H -0.25 3.58 7.01 99.48 0.70 4.28 16 35 H 0.17 -0.36 7.61 -2.91 -0.02 -0.38 16 36 H 0.10 -0.51 8.14 -2.38 -0.02 -0.53 16 37 H 0.11 -0.75 8.10 -2.39 -0.02 -0.77 16 38 H 0.07 -0.69 8.09 -2.39 -0.02 -0.71 16 39 H 0.09 -1.30 8.08 -2.39 -0.02 -1.32 16 40 H 0.15 -1.78 8.06 -2.91 -0.02 -1.80 16 41 H 0.14 -1.11 8.06 -2.91 -0.02 -1.13 16 42 H 0.13 -0.64 8.06 -2.91 -0.02 -0.67 16 43 H 0.13 -0.48 8.06 -2.91 -0.02 -0.51 16 44 H 0.13 -0.52 8.06 -2.91 -0.02 -0.54 16 45 H 0.12 -1.51 7.36 -2.39 -0.02 -1.53 16 46 H 0.14 -2.66 6.32 -2.38 -0.02 -2.68 16 47 H 0.21 -4.07 6.64 -2.91 -0.02 -4.09 16 48 H 0.21 -5.01 4.84 -2.91 -0.01 -5.02 16 Total: 0.00 -42.14 415.00 -1.90 -44.04 By element: Atomic # 1 Polarization: -26.78 SS G_CDS: 0.42 Total: -26.36 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 3.05 Total: 13.08 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -0.20 Total: 0.32 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -6.97 Total: -39.40 kcal Atomic # 14 Polarization: -11.69 SS G_CDS: 2.05 Total: -9.64 kcal Atomic # 16 Polarization: 18.21 SS G_CDS: -0.25 Total: 17.96 kcal Total: -42.14 -1.90 -44.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80028_15608174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.402 kcal (2) G-P(sol) polarization free energy of solvation -42.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds