Wall clock time and date at job start Mon Mar 8 2021 13:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.46931 * 2 1 4 4 C 1.50693 * 109.47664 * 239.99561 * 2 1 3 5 5 C 1.38692 * 120.02246 * 261.47926 * 4 2 1 6 6 O 1.35922 * 120.04365 * 359.97438 * 5 4 2 7 7 S 1.52196 * 114.00153 * 261.27283 * 6 5 4 8 8 O 1.42097 * 104.28015 * 318.03416 * 7 6 5 9 9 O 1.42101 * 104.28000 * 190.17524 * 7 6 5 10 10 C 1.81401 * 104.44691 * 74.10565 * 7 6 5 11 11 H 1.08999 * 112.84759 * 311.19345 * 10 7 6 12 12 C 1.54053 * 113.62192 * 82.50661 * 10 7 6 13 13 C 1.53784 * 86.98588 * 139.97999 * 12 10 7 14 14 H 1.09001 * 113.61292 * 219.98226 * 13 12 10 15 15 O 1.42896 * 113.61607 * 89.15955 * 13 12 10 16 16 C 1.42907 * 113.99763 * 110.86358 * 15 13 12 17 17 C 1.50702 * 109.46725 * 179.97438 * 16 15 13 18 18 C 1.38237 * 119.99916 * 269.72228 * 17 16 15 19 19 C 1.38233 * 119.99527 * 179.79098 * 18 17 16 20 20 C 1.38232 * 120.00266 * 0.46739 * 19 18 17 21 21 C 1.38237 * 120.00206 * 359.76498 * 20 19 18 22 22 C 1.38233 * 119.99600 * 90.00262 * 17 16 15 23 23 C 1.53785 * 113.61238 * 180.02562 * 10 7 6 24 24 C 1.38745 * 119.91820 * 180.27199 * 5 4 2 25 25 C 1.38129 * 119.95111 * 359.48892 * 24 5 4 26 26 C 1.38376 * 120.04293 * 0.50843 * 25 24 5 27 27 Cl 1.73602 * 119.95988 * 179.76556 * 26 25 24 28 28 C 1.38163 * 120.01997 * 81.49307 * 4 2 1 29 29 H 0.96703 * 113.99803 * 175.28868 * 1 2 3 30 30 H 1.09005 * 109.46917 * 119.99181 * 2 1 3 31 31 H 1.48499 * 110.00007 * 179.97438 * 3 2 1 32 32 H 1.48500 * 109.99659 * 301.31490 * 3 2 1 33 33 H 1.08994 * 113.61264 * 25.47230 * 12 10 7 34 34 H 1.09002 * 113.69192 * 254.49457 * 12 10 7 35 35 H 1.08995 * 109.46780 * 299.99980 * 16 15 13 36 36 H 1.08994 * 109.47222 * 60.00214 * 16 15 13 37 37 H 1.07998 * 120.00192 * 0.02562 * 18 17 16 38 38 H 1.07997 * 119.99808 * 180.25457 * 19 18 17 39 39 H 1.08004 * 120.00250 * 179.79249 * 20 19 18 40 40 H 1.07997 * 120.00384 * 180.02562 * 21 20 19 41 41 H 1.07997 * 120.00283 * 359.97425 * 22 17 16 42 42 H 1.09005 * 113.61202 * 105.47374 * 23 10 7 43 43 H 1.08994 * 113.62014 * 334.56641 * 23 10 7 44 44 H 1.08003 * 120.02595 * 179.72313 * 24 5 4 45 45 H 1.08002 * 119.97469 * 180.22979 * 25 24 5 46 46 H 1.08007 * 119.98010 * 359.96096 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2303 5 6 2.3306 -2.0364 -1.1516 6 8 2.2695 -2.6961 0.0352 7 16 3.5987 -2.7675 0.7730 8 8 4.5494 -3.0518 -0.2441 9 8 3.3628 -3.6847 1.8324 10 6 3.8452 -1.0925 1.4244 11 1 3.6917 -0.3189 0.6719 12 6 3.0983 -0.8278 2.7455 13 6 4.3483 -0.0580 3.2037 14 1 4.6074 -0.2284 4.2486 15 8 4.3265 1.3279 2.8562 16 6 4.1864 2.2055 3.9753 17 6 4.1761 3.6339 3.4952 18 6 5.3617 4.3374 3.3930 19 6 5.3526 5.6463 2.9485 20 6 4.1569 6.2548 2.6153 21 6 2.9708 5.5529 2.7220 22 6 2.9804 4.2425 3.1624 23 6 5.1507 -0.9269 2.2201 24 6 2.7982 -2.6867 -2.2845 25 6 2.8554 -2.0158 -3.4906 26 6 2.4566 -0.6930 -3.5671 27 17 2.5352 0.1499 -5.0827 28 6 1.9951 -0.0413 -2.4374 29 1 -0.3933 -0.8805 -0.0726 30 1 1.7923 -0.5137 0.8901 31 1 3.5349 1.7703 0.0006 32 1 1.5354 2.4770 -1.1922 33 1 2.9041 -1.7299 3.3255 34 1 2.2156 -0.1986 2.6311 35 1 3.2516 1.9887 4.4922 36 1 5.0223 2.0585 4.6592 37 1 6.2954 3.8632 3.6569 38 1 6.2792 6.1945 2.8647 39 1 4.1495 7.2785 2.2711 40 1 2.0367 6.0281 2.4613 41 1 2.0537 3.6942 3.2461 42 1 5.9233 -0.3775 1.6820 43 1 5.5169 -1.8561 2.6567 44 1 3.1136 -3.7179 -2.2242 45 1 3.2158 -2.5228 -4.3735 46 1 1.6840 0.9912 -2.4992 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80032_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:17:48 Heat of formation + Delta-G solvation = -79.005574 kcal Electronic energy + Delta-G solvation = -36117.612125 eV Core-core repulsion = 31287.820983 eV Total energy + Delta-G solvation = -4829.791143 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.072 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.76204 -40.83070 -39.97592 -39.80004 -38.63001 -38.13855 -37.51088 -37.42061 -36.98833 -33.24768 -32.61642 -31.73103 -31.62822 -28.10276 -27.22381 -26.89887 -26.28448 -25.07520 -23.48403 -23.42381 -22.20664 -22.08114 -21.03800 -19.93706 -19.30453 -19.02273 -18.69435 -18.07668 -17.80251 -17.37981 -17.22021 -16.69339 -16.51094 -16.48476 -16.19508 -15.84342 -15.74195 -15.47590 -15.26090 -14.99141 -14.74042 -14.63869 -14.30947 -14.21995 -14.14925 -14.09256 -13.81756 -13.79931 -13.67785 -13.58684 -13.47943 -13.34375 -13.24431 -13.16371 -12.66537 -12.39674 -12.29964 -12.10444 -12.01023 -11.82154 -11.71199 -11.65435 -11.29281 -11.22600 -10.58791 -10.51149 -10.15217 -9.76747 -9.71009 -5.06660 -1.38455 -0.50840 -0.38131 0.38368 0.55515 0.62271 0.74692 1.05591 1.51963 1.71224 1.87183 2.26374 2.45475 2.53561 2.79997 2.94439 2.99535 3.19758 3.22766 3.44553 3.50112 3.58768 3.60000 3.67840 3.72515 3.95923 3.97861 4.01118 4.17107 4.21545 4.27604 4.33605 4.35053 4.41698 4.44781 4.53127 4.58331 4.64935 4.65826 4.69483 4.70930 4.74080 4.80279 4.84672 4.85773 5.14447 5.14547 5.21833 5.60491 5.68126 5.71093 6.14908 6.25015 6.43901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.095 4.095 3 Si 0.774 3.226 4 C -0.110 4.110 5 C 0.064 3.936 6 O -0.658 6.658 7 S 2.590 3.410 8 O -0.972 6.972 9 O -0.942 6.942 10 C -0.646 4.646 11 H 0.151 0.849 12 C -0.138 4.138 13 C 0.084 3.916 14 H 0.120 0.880 15 O -0.371 6.371 16 C 0.097 3.903 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.139 4.139 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.111 4.111 24 C -0.084 4.084 25 C -0.083 4.083 26 C -0.021 4.021 27 Cl -0.043 7.043 28 C -0.103 4.103 29 H 0.383 0.617 30 H 0.091 0.909 31 H -0.251 1.251 32 H -0.269 1.269 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.165 0.835 45 H 0.179 0.821 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 3.464 3.788 5.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.203 4.203 3 Si 0.673 3.327 4 C -0.113 4.113 5 C 0.022 3.978 6 O -0.617 6.617 7 S 2.689 3.311 8 O -0.970 6.970 9 O -0.940 6.940 10 C -0.756 4.756 11 H 0.169 0.831 12 C -0.176 4.176 13 C 0.024 3.976 14 H 0.137 0.863 15 O -0.291 6.291 16 C 0.022 3.978 17 C -0.105 4.105 18 C -0.133 4.133 19 C -0.157 4.157 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.126 4.126 23 C -0.150 4.150 24 C -0.104 4.104 25 C -0.102 4.102 26 C -0.048 4.048 27 Cl -0.014 7.014 28 C -0.121 4.121 29 H 0.232 0.768 30 H 0.109 0.891 31 H -0.176 1.176 32 H -0.195 1.195 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.119 0.881 43 H 0.141 0.859 44 H 0.183 0.817 45 H 0.196 0.804 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.028 4.001 3.040 5.025 hybrid contribution 0.070 -1.072 -0.808 1.344 sum 0.098 2.929 2.232 3.684 Atomic orbital electron populations 1.86724 1.15353 1.35200 1.96410 1.25890 0.86378 1.13625 0.94436 0.92332 0.78764 0.74884 0.86710 1.20518 1.01010 0.92120 0.97611 1.18049 1.06790 0.90501 0.82433 1.85683 1.60516 1.76391 1.39068 1.05639 0.72716 0.78243 0.74487 1.93616 1.62934 1.84478 1.56000 1.93627 1.83072 1.60095 1.57200 1.32375 1.10834 1.22121 1.10236 0.83134 1.23669 0.99884 1.03870 0.90212 1.22857 0.94012 0.81218 0.99497 0.86258 1.87972 1.93731 1.14582 1.32799 1.21592 1.02900 0.85370 0.87981 1.19817 0.93770 0.95229 1.01730 1.21308 0.98228 0.94818 0.98924 1.21416 0.98935 0.95543 0.99820 1.21520 0.92945 1.00831 0.99286 1.21516 0.99013 0.94999 0.99643 1.21448 0.98474 0.95258 0.97457 1.23053 0.93106 1.02401 0.96427 1.21696 0.95913 1.02273 0.90488 1.21374 0.97687 0.92021 0.99071 1.21213 1.01301 0.93975 0.88352 1.98428 1.96583 1.77338 1.29060 1.21091 0.99346 1.01382 0.90325 0.76764 0.89143 1.17614 1.19482 0.85268 0.86743 0.89744 0.90854 0.85309 0.85119 0.84900 0.84085 0.83453 0.88144 0.85878 0.81737 0.80374 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.09 12.68 -148.98 -1.89 -1.80 16 2 C -0.10 -0.03 2.05 71.23 0.15 0.12 16 3 Si 0.77 0.70 29.52 68.60 2.03 2.73 16 4 C -0.11 -0.31 4.25 -19.78 -0.08 -0.40 16 5 C 0.06 0.25 4.92 22.50 0.11 0.36 16 6 O -0.66 -2.68 9.15 -61.77 -0.56 -3.24 16 7 S 2.59 11.66 5.13 -56.49 -0.29 11.37 16 8 O -0.97 -8.72 15.70 -118.57 -1.86 -10.59 16 9 O -0.94 -8.41 17.28 -118.57 -2.05 -10.45 16 10 C -0.65 0.76 2.71 31.21 0.08 0.85 16 11 H 0.15 -0.08 4.03 -2.39 -0.01 -0.08 16 12 C -0.14 0.80 6.76 31.21 0.21 1.01 16 13 C 0.08 -0.52 4.36 31.14 0.14 -0.38 16 14 H 0.12 -1.35 7.88 -2.39 -0.02 -1.37 16 15 O -0.37 1.02 10.25 -148.98 -1.53 -0.51 16 16 C 0.10 -0.53 5.91 71.24 0.42 -0.11 16 17 C -0.11 0.14 5.51 -19.87 -0.11 0.03 16 18 C -0.11 0.00 9.70 22.27 0.22 0.21 16 19 C -0.14 -0.04 10.05 22.27 0.22 0.18 16 20 C -0.13 0.04 10.05 22.27 0.22 0.27 16 21 C -0.13 0.20 10.05 22.27 0.22 0.43 16 22 C -0.11 0.24 9.70 22.27 0.22 0.46 16 23 C -0.11 0.46 7.50 31.14 0.23 0.69 16 24 C -0.08 -0.22 8.54 22.37 0.19 -0.03 16 25 C -0.08 -0.03 9.82 22.28 0.22 0.19 16 26 C -0.02 -0.05 6.32 22.33 0.14 0.09 16 27 Cl -0.04 -0.09 28.95 -2.72 -0.08 -0.16 16 28 C -0.10 -0.33 8.44 22.28 0.19 -0.14 16 29 H 0.38 -1.81 9.03 -74.06 -0.67 -2.48 16 30 H 0.09 -0.23 2.52 -2.38 -0.01 -0.24 16 31 H -0.25 -1.13 6.91 99.48 0.69 -0.44 16 32 H -0.27 -1.29 6.47 99.48 0.64 -0.64 16 33 H 0.13 -0.97 7.43 -2.39 -0.02 -0.99 16 34 H 0.11 -0.96 6.81 -2.39 -0.02 -0.97 16 35 H 0.08 -0.79 8.09 -2.39 -0.02 -0.81 16 36 H 0.07 -0.56 8.08 -2.39 -0.02 -0.58 16 37 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 38 H 0.13 -0.33 8.06 -2.91 -0.02 -0.35 16 39 H 0.13 -0.46 8.06 -2.91 -0.02 -0.48 16 40 H 0.14 -0.77 8.06 -2.91 -0.02 -0.79 16 41 H 0.15 -1.06 8.06 -2.91 -0.02 -1.08 16 42 H 0.10 -0.35 8.14 -2.38 -0.02 -0.37 16 43 H 0.12 -0.92 8.10 -2.39 -0.02 -0.94 16 44 H 0.17 0.09 7.84 -2.91 -0.02 0.07 16 45 H 0.18 -0.88 8.06 -2.91 -0.02 -0.90 16 46 H 0.15 0.42 5.87 -2.91 -0.02 0.40 16 Total: 0.00 -19.32 400.86 -2.91 -22.23 By element: Atomic # 1 Polarization: -13.73 SS G_CDS: 0.34 Total: -13.40 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 2.99 Total: 3.83 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -7.89 Total: -26.59 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: 2.03 Total: 2.73 kcal Atomic # 16 Polarization: 11.66 SS G_CDS: -0.29 Total: 11.37 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.16 kcal Total: -19.32 -2.91 -22.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80032_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.778 kcal (2) G-P(sol) polarization free energy of solvation -19.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds