Wall clock time and date at job start Mon Mar 8 2021 14:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00191 * 2 1 4 4 C 1.53000 * 112.85268 * 294.10236 * 3 2 1 5 5 F 1.39902 * 109.47135 * 194.79565 * 4 3 2 6 6 F 1.39894 * 109.47363 * 314.79973 * 4 3 2 7 7 F 1.39898 * 109.46928 * 74.79742 * 4 3 2 8 8 C 1.53779 * 113.61265 * 162.79638 * 3 2 1 9 9 C 1.53773 * 87.08316 * 270.88698 * 8 3 2 10 10 H 1.09000 * 113.61459 * 220.01989 * 9 8 3 11 11 C 1.52999 * 113.61599 * 89.11591 * 9 8 3 12 12 S 1.81399 * 109.47258 * 88.36039 * 11 9 8 13 13 O 1.42097 * 110.54331 * 291.50202 * 12 11 9 14 14 O 1.42107 * 110.54338 * 68.24728 * 12 11 9 15 15 O 1.52196 * 104.45084 * 179.87459 * 12 11 9 16 16 C 1.35915 * 113.99912 * 75.10396 * 15 12 11 17 17 C 1.38705 * 120.03992 * 95.40325 * 16 15 12 18 18 C 1.50699 * 120.02453 * 359.97438 * 17 16 15 19 19 O 1.42899 * 109.46978 * 75.08271 * 18 17 16 20 20 Si 1.86296 * 109.47210 * 195.08352 * 18 17 16 21 21 C 1.38170 * 119.95264 * 179.74374 * 17 16 15 22 22 C 1.38343 * 120.04577 * 0.55703 * 21 17 16 23 23 Cl 1.73594 * 119.96148 * 179.72419 * 22 21 17 24 24 C 1.38386 * 120.08219 * 359.69306 * 22 21 17 25 25 C 1.38124 * 120.04404 * 0.02653 * 24 22 21 26 26 C 1.53778 * 87.08170 * 334.56595 * 9 8 3 27 27 H 1.08992 * 109.47635 * 182.35052 * 1 2 3 28 28 H 1.09000 * 109.46789 * 302.35643 * 1 2 3 29 29 H 1.09004 * 109.47245 * 62.34919 * 1 2 3 30 30 H 1.09002 * 113.61420 * 25.43792 * 8 3 2 31 31 H 1.09001 * 113.61430 * 156.25207 * 8 3 2 32 32 H 1.09004 * 109.47416 * 208.35925 * 11 9 8 33 33 H 1.09002 * 109.47169 * 328.36266 * 11 9 8 34 34 H 1.08994 * 109.47081 * 315.08467 * 18 17 16 35 35 H 0.96710 * 113.99891 * 65.44602 * 19 18 17 36 36 H 1.48502 * 110.00373 * 58.68124 * 20 18 17 37 37 H 1.48501 * 110.00046 * 180.02562 * 20 18 17 38 38 H 1.08003 * 119.97458 * 180.27177 * 21 17 16 39 39 H 1.07998 * 119.98098 * 180.02562 * 24 22 21 40 40 H 1.08006 * 120.02219 * 179.97438 * 25 24 22 41 41 H 1.09001 * 113.61556 * 270.88296 * 26 9 8 42 42 H 1.09002 * 113.61400 * 139.97592 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7260 2.0824 -1.2870 5 9 2.5830 3.1855 -1.3647 6 9 1.9367 1.2494 -2.3909 7 9 0.3982 2.5230 -1.2820 8 6 3.4904 1.3206 0.4167 9 6 2.9996 1.4810 1.8652 10 1 3.5972 2.1768 2.4542 11 6 2.7569 0.1507 2.5810 12 16 4.2938 -0.3995 3.3722 13 8 5.2560 -0.7645 2.3924 14 8 4.6358 0.4614 4.4498 15 8 3.9253 -1.7142 4.0445 16 6 3.7931 -2.7575 3.1834 17 6 4.8603 -3.6157 2.9633 18 6 6.1678 -3.3918 3.6784 19 8 6.0407 -3.7994 5.0421 20 14 7.5059 -4.3916 2.8535 21 6 4.7223 -4.6787 2.0916 22 6 3.5244 -4.8808 1.4297 23 17 3.3557 -6.2129 0.3295 24 6 2.4601 -4.0226 1.6441 25 6 2.5923 -2.9621 2.5192 26 6 1.7230 2.1076 1.2802 27 1 -0.3634 -1.0267 0.0421 28 1 -0.3633 0.5500 0.8681 29 1 -0.3634 0.4769 -0.9103 30 1 4.0057 0.3780 0.2321 31 1 4.0405 2.1840 0.0426 32 1 1.9847 0.2815 3.3390 33 1 2.4328 -0.5974 1.8574 34 1 6.4275 -2.3340 3.6381 35 1 5.8925 -4.7482 5.1569 36 1 7.6264 -3.9995 1.4263 37 1 8.8004 -4.1800 3.5498 38 1 5.5517 -5.3498 1.9233 39 1 1.5256 -4.1820 1.1268 40 1 1.7616 -2.2923 2.6859 41 1 1.7896 3.1870 1.1433 42 1 0.8114 1.8003 1.7926 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_80032_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:02:47 Heat of formation + Delta-G solvation = -260.663124 kcal Electronic energy + Delta-G solvation = -38738.003148 eV Core-core repulsion = 33004.877378 eV Total energy + Delta-G solvation = -5733.125770 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.044 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.25906 -48.80618 -48.68747 -42.60087 -41.69406 -39.77063 -38.39492 -38.06678 -37.58348 -37.44214 -37.22048 -33.30082 -32.02415 -31.47330 -28.66037 -27.99591 -27.27543 -27.06521 -25.00853 -23.75807 -23.35672 -21.92652 -20.91483 -20.09526 -19.72856 -19.53643 -19.37112 -18.95948 -18.78377 -18.30567 -17.52781 -17.45992 -17.03077 -16.82057 -16.68037 -16.10104 -15.97745 -15.92828 -15.73144 -15.60981 -15.47937 -15.32546 -15.15800 -15.00367 -14.91223 -14.84052 -14.81474 -14.66102 -14.48364 -14.14340 -14.05798 -13.84542 -13.53848 -13.42329 -13.32876 -13.26575 -13.21762 -12.91747 -12.63651 -12.59313 -12.47063 -12.45289 -12.28328 -12.10614 -11.96761 -11.64234 -11.02347 -10.64758 -10.53073 -10.03546 -5.15129 -1.29520 -0.40306 -0.33845 0.73143 0.89107 1.11165 1.43922 1.59799 1.83809 1.91734 1.94294 2.32629 2.40018 2.50052 2.66975 2.69152 2.91224 3.00863 3.08720 3.20204 3.21748 3.36891 3.39860 3.44881 3.63277 3.70722 3.78448 3.91210 3.94886 4.04492 4.13121 4.17069 4.18082 4.19299 4.27763 4.35778 4.42225 4.46630 4.54396 4.61309 4.62686 4.67871 4.72573 5.19117 5.45483 6.45796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.333 6.333 3 C 0.042 3.958 4 C 0.438 3.562 5 F -0.174 7.174 6 F -0.173 7.173 7 F -0.181 7.181 8 C -0.125 4.125 9 C -0.092 4.092 10 H 0.110 0.890 11 C -0.646 4.646 12 S 2.587 3.413 13 O -0.944 6.944 14 O -0.916 6.916 15 O -0.651 6.651 16 C 0.096 3.904 17 C -0.075 4.075 18 C -0.084 4.084 19 O -0.527 6.527 20 Si 0.688 3.312 21 C -0.089 4.089 22 C -0.015 4.015 23 Cl -0.043 7.043 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.137 4.137 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.379 0.621 36 H -0.243 1.243 37 H -0.243 1.243 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.114 0.886 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 -3.665 -0.574 5.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.250 6.250 3 C 0.000 4.000 4 C 0.383 3.617 5 F -0.155 7.155 6 F -0.154 7.154 7 F -0.162 7.162 8 C -0.162 4.162 9 C -0.111 4.111 10 H 0.129 0.871 11 C -0.772 4.772 12 S 2.682 3.318 13 O -0.943 6.943 14 O -0.915 6.915 15 O -0.610 6.610 16 C 0.054 3.946 17 C -0.078 4.078 18 C -0.193 4.193 19 O -0.331 6.331 20 Si 0.587 3.413 21 C -0.108 4.108 22 C -0.043 4.043 23 Cl -0.013 7.013 24 C -0.100 4.100 25 C -0.141 4.141 26 C -0.175 4.175 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.144 0.856 32 H 0.166 0.834 33 H 0.171 0.829 34 H 0.138 0.862 35 H 0.226 0.774 36 H -0.167 1.167 37 H -0.168 1.168 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.133 0.867 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.008 -3.283 -0.575 4.490 hybrid contribution -1.500 1.137 -0.506 1.949 sum -4.508 -2.147 -1.081 5.109 Atomic orbital electron populations 1.23187 0.79385 1.04434 1.01858 1.88036 1.21208 1.21925 1.93878 1.23920 0.99565 0.86416 0.90133 1.21108 0.74370 0.78750 0.87440 1.93190 1.70352 1.55333 1.96638 1.93227 1.94453 1.71262 1.56434 1.93193 1.35862 1.90290 1.96865 1.23478 0.91666 1.06958 0.94132 1.21698 0.99416 0.94088 0.95925 0.87147 1.30928 1.24295 1.07933 1.14072 1.05811 0.76894 0.74264 0.74788 1.93653 1.57341 1.79611 1.63649 1.93684 1.81418 1.64292 1.52066 1.85769 1.90230 1.33169 1.51824 1.17824 0.94903 0.89634 0.92229 1.20422 0.96255 0.94300 0.96804 1.25263 0.99397 1.07062 0.87617 1.86620 1.95153 1.29656 1.21717 0.95404 0.77853 0.88124 0.79928 1.20861 0.97113 0.97151 0.95645 1.21034 0.95300 0.92465 0.95511 1.98435 1.97768 1.44245 1.60880 1.20982 0.98991 0.92730 0.97328 1.21399 0.96151 0.99872 0.96706 1.23599 0.99230 1.01146 0.93551 0.87872 0.92524 0.92553 0.87285 0.85628 0.83400 0.82875 0.86203 0.77365 1.16738 1.16772 0.82827 0.82787 0.82994 0.86729 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.34 101.05 1.04 1.02 16 2 O -0.33 0.50 8.39 -35.23 -0.30 0.21 16 3 C 0.04 -0.06 0.84 -89.81 -0.08 -0.13 16 4 C 0.44 0.17 2.53 37.16 0.09 0.26 16 5 F -0.17 -0.11 15.80 2.25 0.04 -0.08 16 6 F -0.17 -0.36 17.12 2.25 0.04 -0.33 16 7 F -0.18 -0.10 15.27 2.25 0.03 -0.07 16 8 C -0.13 0.20 6.89 -25.92 -0.18 0.02 16 9 C -0.09 0.21 3.85 -89.81 -0.35 -0.13 16 10 H 0.11 -0.36 8.12 -51.93 -0.42 -0.78 16 11 C -0.65 1.62 4.86 37.16 0.18 1.80 16 12 S 2.59 4.24 4.98 -107.50 -0.54 3.70 16 13 O -0.94 -3.02 15.01 -67.04 -1.01 -4.03 16 14 O -0.92 -4.72 18.09 -67.04 -1.21 -5.93 16 15 O -0.65 -1.19 9.41 -51.80 -0.49 -1.68 16 16 C 0.10 0.06 4.70 -39.22 -0.18 -0.12 16 17 C -0.07 -0.05 4.81 -104.47 -0.50 -0.55 16 18 C -0.08 -0.13 2.32 36.01 0.08 -0.04 16 19 O -0.53 -0.66 12.94 -35.23 -0.46 -1.12 16 20 Si 0.69 -0.36 29.84 -169.99 -5.07 -5.44 16 21 C -0.09 0.12 8.44 -39.57 -0.33 -0.22 16 22 C -0.02 0.02 6.32 -39.49 -0.25 -0.22 16 23 Cl -0.04 0.06 28.95 -51.86 -1.50 -1.44 16 24 C -0.08 0.22 9.82 -39.57 -0.39 -0.17 16 25 C -0.12 0.27 8.41 -39.44 -0.33 -0.06 16 26 C -0.14 0.42 6.53 -25.92 -0.17 0.26 16 27 H 0.10 -0.52 8.14 -51.93 -0.42 -0.95 16 28 H 0.06 -0.26 6.62 -51.93 -0.34 -0.60 16 29 H 0.06 -0.13 6.47 -51.93 -0.34 -0.46 16 30 H 0.11 -0.12 8.10 -51.93 -0.42 -0.54 16 31 H 0.13 -0.33 7.05 -51.93 -0.37 -0.70 16 32 H 0.15 -0.76 8.14 -51.92 -0.42 -1.18 16 33 H 0.15 -0.53 4.14 -51.92 -0.21 -0.74 16 34 H 0.12 0.42 6.10 -51.93 -0.32 0.10 16 35 H 0.38 -1.41 8.60 45.56 0.39 -1.02 16 36 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16 37 H -0.24 -0.55 7.11 56.52 0.40 -0.15 16 38 H 0.15 -0.56 5.14 -52.48 -0.27 -0.83 16 39 H 0.15 -0.77 8.06 -52.49 -0.42 -1.19 16 40 H 0.15 -0.79 6.87 -52.48 -0.36 -1.15 16 41 H 0.11 -0.45 8.01 -51.93 -0.42 -0.86 16 42 H 0.10 -0.44 6.65 -51.93 -0.35 -0.78 16 LS Contribution 376.85 15.07 5.68 5.68 Total: 0.00 -10.65 376.85 -10.02 -20.67 By element: Atomic # 1 Polarization: -7.99 SS G_CDS: -3.88 Total: -11.87 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.36 Total: 1.70 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -3.46 Total: -12.54 kcal Atomic # 9 Polarization: -0.58 SS G_CDS: 0.11 Total: -0.47 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: -5.07 Total: -5.44 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -0.54 Total: 3.70 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.50 Total: -1.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -10.65 -10.02 -20.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80032_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.994 kcal (2) G-P(sol) polarization free energy of solvation -10.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds