Wall clock time and date at job start Mon Mar 8 2021 14:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00191 * 2 1 4 4 C 1.53000 * 112.85268 * 294.10236 * 3 2 1 5 5 F 1.39902 * 109.47135 * 194.79565 * 4 3 2 6 6 F 1.39894 * 109.47363 * 314.79973 * 4 3 2 7 7 F 1.39898 * 109.46928 * 74.79742 * 4 3 2 8 8 C 1.53779 * 113.61265 * 162.79638 * 3 2 1 9 9 C 1.53773 * 87.08316 * 270.88698 * 8 3 2 10 10 H 1.09000 * 113.61459 * 220.01989 * 9 8 3 11 11 C 1.52999 * 113.61599 * 89.11591 * 9 8 3 12 12 S 1.81399 * 109.47258 * 88.36039 * 11 9 8 13 13 O 1.42097 * 110.54331 * 291.50202 * 12 11 9 14 14 O 1.42107 * 110.54338 * 68.24728 * 12 11 9 15 15 O 1.52196 * 104.45084 * 179.87459 * 12 11 9 16 16 C 1.35915 * 113.99912 * 75.10396 * 15 12 11 17 17 C 1.38705 * 120.03992 * 95.40325 * 16 15 12 18 18 C 1.50699 * 120.02453 * 359.97438 * 17 16 15 19 19 O 1.42899 * 109.46978 * 75.08271 * 18 17 16 20 20 Si 1.86296 * 109.47210 * 195.08352 * 18 17 16 21 21 C 1.38170 * 119.95264 * 179.74374 * 17 16 15 22 22 C 1.38343 * 120.04577 * 0.55703 * 21 17 16 23 23 Cl 1.73594 * 119.96148 * 179.72419 * 22 21 17 24 24 C 1.38386 * 120.08219 * 359.69306 * 22 21 17 25 25 C 1.38124 * 120.04404 * 0.02653 * 24 22 21 26 26 C 1.53778 * 87.08170 * 334.56595 * 9 8 3 27 27 H 1.08992 * 109.47635 * 182.35052 * 1 2 3 28 28 H 1.09000 * 109.46789 * 302.35643 * 1 2 3 29 29 H 1.09004 * 109.47245 * 62.34919 * 1 2 3 30 30 H 1.09002 * 113.61420 * 25.43792 * 8 3 2 31 31 H 1.09001 * 113.61430 * 156.25207 * 8 3 2 32 32 H 1.09004 * 109.47416 * 208.35925 * 11 9 8 33 33 H 1.09002 * 109.47169 * 328.36266 * 11 9 8 34 34 H 1.08994 * 109.47081 * 315.08467 * 18 17 16 35 35 H 0.96710 * 113.99891 * 65.44602 * 19 18 17 36 36 H 1.48502 * 110.00373 * 58.68124 * 20 18 17 37 37 H 1.48501 * 110.00046 * 180.02562 * 20 18 17 38 38 H 1.08003 * 119.97458 * 180.27177 * 21 17 16 39 39 H 1.07998 * 119.98098 * 180.02562 * 24 22 21 40 40 H 1.08006 * 120.02219 * 179.97438 * 25 24 22 41 41 H 1.09001 * 113.61556 * 270.88296 * 26 9 8 42 42 H 1.09002 * 113.61400 * 139.97592 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7260 2.0824 -1.2870 5 9 2.5830 3.1855 -1.3647 6 9 1.9367 1.2494 -2.3909 7 9 0.3982 2.5230 -1.2820 8 6 3.4904 1.3206 0.4167 9 6 2.9996 1.4810 1.8652 10 1 3.5972 2.1768 2.4542 11 6 2.7569 0.1507 2.5810 12 16 4.2938 -0.3995 3.3722 13 8 5.2560 -0.7645 2.3924 14 8 4.6358 0.4614 4.4498 15 8 3.9253 -1.7142 4.0445 16 6 3.7931 -2.7575 3.1834 17 6 4.8603 -3.6157 2.9633 18 6 6.1678 -3.3918 3.6784 19 8 6.0407 -3.7994 5.0421 20 14 7.5059 -4.3916 2.8535 21 6 4.7223 -4.6787 2.0916 22 6 3.5244 -4.8808 1.4297 23 17 3.3557 -6.2129 0.3295 24 6 2.4601 -4.0226 1.6441 25 6 2.5923 -2.9621 2.5192 26 6 1.7230 2.1076 1.2802 27 1 -0.3634 -1.0267 0.0421 28 1 -0.3633 0.5500 0.8681 29 1 -0.3634 0.4769 -0.9103 30 1 4.0057 0.3780 0.2321 31 1 4.0405 2.1840 0.0426 32 1 1.9847 0.2815 3.3390 33 1 2.4328 -0.5974 1.8574 34 1 6.4275 -2.3340 3.6381 35 1 5.8925 -4.7482 5.1569 36 1 7.6264 -3.9995 1.4263 37 1 8.8004 -4.1800 3.5498 38 1 5.5517 -5.3498 1.9233 39 1 1.5256 -4.1820 1.1268 40 1 1.7616 -2.2923 2.6859 41 1 1.7896 3.1870 1.1433 42 1 0.8114 1.8003 1.7926 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80032_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:02:46 Heat of formation + Delta-G solvation = -262.639943 kcal Electronic energy + Delta-G solvation = -38738.088869 eV Core-core repulsion = 33004.877378 eV Total energy + Delta-G solvation = -5733.211491 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.044 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -51.27733 -48.81508 -48.74378 -42.55463 -41.50011 -39.69499 -38.55088 -38.05220 -37.49196 -37.36880 -37.22281 -33.18590 -31.88917 -31.35196 -28.40498 -27.88794 -27.24776 -26.82241 -24.90806 -23.64936 -23.28555 -21.88867 -20.77477 -20.04507 -19.72086 -19.55125 -19.33470 -18.98155 -18.74929 -18.28543 -17.44660 -17.30279 -16.96901 -16.78715 -16.47851 -16.07377 -15.88798 -15.81930 -15.68186 -15.62206 -15.40783 -15.27075 -15.14701 -14.94403 -14.91053 -14.80659 -14.73767 -14.57216 -14.40452 -14.23456 -14.01719 -13.82600 -13.57023 -13.44125 -13.29953 -13.19409 -12.96772 -12.79752 -12.57520 -12.40211 -12.35559 -12.24122 -12.23424 -12.13369 -11.90134 -11.48144 -10.83749 -10.68421 -10.37525 -9.92353 -5.17803 -1.30084 -0.31526 -0.17744 0.80120 0.96423 1.08269 1.50131 1.55639 1.88372 2.05306 2.06461 2.33053 2.51699 2.57683 2.70423 2.80810 3.08477 3.15034 3.17641 3.28083 3.35589 3.47246 3.50402 3.56291 3.82963 3.89533 3.95421 4.16277 4.19954 4.26971 4.31736 4.36111 4.38216 4.44220 4.51705 4.51988 4.64339 4.72540 4.77927 4.83120 4.84727 4.85070 4.89208 5.34063 5.69659 6.65436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.340 6.340 3 C 0.042 3.958 4 C 0.432 3.568 5 F -0.178 7.178 6 F -0.187 7.187 7 F -0.182 7.182 8 C -0.137 4.137 9 C -0.099 4.099 10 H 0.117 0.883 11 C -0.621 4.621 12 S 2.579 3.421 13 O -0.972 6.972 14 O -0.966 6.966 15 O -0.661 6.661 16 C 0.069 3.931 17 C -0.094 4.094 18 C -0.103 4.103 19 O -0.546 6.546 20 Si 0.789 3.211 21 C -0.092 4.092 22 C -0.020 4.020 23 Cl -0.042 7.042 24 C -0.075 4.075 25 C -0.115 4.115 26 C -0.127 4.127 27 H 0.123 0.877 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.183 0.817 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.399 0.601 36 H -0.274 1.274 37 H -0.285 1.285 38 H 0.171 0.829 39 H 0.183 0.817 40 H 0.185 0.815 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -4.315 -0.896 8.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.258 6.258 3 C -0.001 4.001 4 C 0.378 3.622 5 F -0.160 7.160 6 F -0.168 7.168 7 F -0.164 7.164 8 C -0.174 4.174 9 C -0.119 4.119 10 H 0.135 0.865 11 C -0.751 4.751 12 S 2.679 3.321 13 O -0.971 6.971 14 O -0.964 6.964 15 O -0.620 6.620 16 C 0.028 3.972 17 C -0.097 4.097 18 C -0.211 4.211 19 O -0.355 6.355 20 Si 0.691 3.309 21 C -0.110 4.110 22 C -0.048 4.048 23 Cl -0.013 7.013 24 C -0.094 4.094 25 C -0.135 4.135 26 C -0.166 4.166 27 H 0.141 0.859 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.201 0.799 33 H 0.186 0.814 34 H 0.109 0.891 35 H 0.249 0.751 36 H -0.200 1.200 37 H -0.212 1.212 38 H 0.188 0.812 39 H 0.200 0.800 40 H 0.203 0.797 41 H 0.142 0.858 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.437 -3.959 -0.862 6.781 hybrid contribution -0.798 1.345 -0.473 1.634 sum -6.235 -2.614 -1.335 6.892 Atomic orbital electron populations 1.23408 0.78391 1.05966 1.01975 1.88028 1.22294 1.21636 1.93812 1.23996 0.99612 0.86793 0.89685 1.21510 0.74195 0.78710 0.87827 1.93175 1.70500 1.55626 1.96686 1.93193 1.94543 1.71680 1.57414 1.93185 1.35972 1.90334 1.96878 1.23597 0.91924 1.06849 0.94995 1.21805 1.00274 0.94290 0.95505 0.86484 1.30740 1.21460 1.08163 1.14736 1.05851 0.78325 0.73817 0.74096 1.93607 1.59782 1.79889 1.63773 1.93615 1.83225 1.65527 1.54037 1.85729 1.90358 1.33533 1.52388 1.18254 0.96205 0.89612 0.93151 1.20440 0.95988 0.95515 0.97801 1.25467 1.01421 1.06035 0.88129 1.86558 1.95326 1.31674 1.21902 0.94383 0.74134 0.86212 0.76210 1.21000 0.98037 0.96868 0.95136 1.21178 0.95564 0.92677 0.95388 1.98438 1.97740 1.44302 1.60842 1.21359 0.99644 0.91752 0.96629 1.21762 0.95852 1.00306 0.95599 1.23659 0.99415 1.01454 0.92034 0.85857 0.90759 0.93971 0.88157 0.85166 0.79908 0.81376 0.89120 0.75095 1.19981 1.21235 0.81206 0.79963 0.79740 0.85849 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.34 113.37 1.17 1.19 16 2 O -0.34 1.64 8.39 -148.98 -1.25 0.39 16 3 C 0.04 -0.15 0.84 -10.27 -0.01 -0.16 16 4 C 0.43 0.25 2.53 71.98 0.18 0.43 16 5 F -0.18 -0.26 15.80 44.97 0.71 0.45 16 6 F -0.19 -0.87 17.12 44.97 0.77 -0.10 16 7 F -0.18 -0.10 15.27 44.97 0.69 0.58 16 8 C -0.14 0.43 6.89 31.12 0.21 0.64 16 9 C -0.10 0.56 3.85 -10.27 -0.04 0.52 16 10 H 0.12 -0.79 8.12 -2.39 -0.02 -0.81 16 11 C -0.62 3.97 4.86 71.98 0.35 4.32 16 12 S 2.58 11.81 4.98 -56.49 -0.28 11.53 16 13 O -0.97 -8.52 15.01 -118.57 -1.78 -10.30 16 14 O -0.97 -12.16 18.09 -118.57 -2.15 -14.31 16 15 O -0.66 -3.15 9.41 -61.69 -0.58 -3.74 16 16 C 0.07 0.11 4.70 22.50 0.11 0.21 16 17 C -0.09 -0.20 4.81 -19.77 -0.10 -0.30 16 18 C -0.10 -0.52 2.32 71.24 0.17 -0.36 16 19 O -0.55 -2.36 12.94 -148.98 -1.93 -4.29 16 20 Si 0.79 0.30 29.84 68.60 2.05 2.34 16 21 C -0.09 0.24 8.44 22.28 0.19 0.43 16 22 C -0.02 0.09 6.32 22.33 0.14 0.23 16 23 Cl -0.04 0.17 28.95 -2.72 -0.08 0.09 16 24 C -0.08 0.56 9.82 22.28 0.22 0.78 16 25 C -0.12 0.70 8.41 22.36 0.19 0.89 16 26 C -0.13 1.04 6.53 31.12 0.20 1.25 16 27 H 0.12 -1.62 8.14 -2.39 -0.02 -1.64 16 28 H 0.07 -0.92 6.62 -2.39 -0.02 -0.94 16 29 H 0.04 -0.24 6.47 -2.38 -0.02 -0.25 16 30 H 0.10 -0.14 8.10 -2.39 -0.02 -0.16 16 31 H 0.13 -0.61 7.05 -2.39 -0.02 -0.63 16 32 H 0.18 -2.43 8.14 -2.39 -0.02 -2.45 16 33 H 0.17 -1.52 4.14 -2.39 -0.01 -1.53 16 34 H 0.09 0.96 6.10 -2.39 -0.01 0.95 16 35 H 0.40 -2.55 8.60 -74.05 -0.64 -3.19 16 36 H -0.27 -1.37 7.11 99.48 0.71 -0.66 16 37 H -0.29 -1.95 7.11 99.48 0.71 -1.24 16 38 H 0.17 -1.25 5.14 -2.91 -0.01 -1.27 16 39 H 0.18 -2.43 8.06 -2.91 -0.02 -2.45 16 40 H 0.19 -2.52 6.87 -2.91 -0.02 -2.54 16 41 H 0.12 -1.19 8.01 -2.39 -0.02 -1.21 16 42 H 0.12 -1.48 6.65 -2.39 -0.02 -1.50 16 Total: 0.00 -28.51 376.85 -0.31 -28.82 By element: Atomic # 1 Polarization: -22.06 SS G_CDS: 0.53 Total: -21.53 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 2.98 Total: 10.06 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -7.68 Total: -32.25 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 2.17 Total: 0.94 kcal Atomic # 14 Polarization: 0.30 SS G_CDS: 2.05 Total: 2.34 kcal Atomic # 16 Polarization: 11.81 SS G_CDS: -0.28 Total: 11.53 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.08 Total: 0.09 kcal Total: -28.51 -0.31 -28.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80032_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.816 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds