Wall clock time and date at job start Mon Mar 8 2021 11:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35996 * 117.00111 * 2 1 4 4 C 1.39134 * 120.06926 * 180.21202 * 3 2 1 5 5 O 1.36010 * 120.07731 * 0.03631 * 4 3 2 6 6 S 1.52194 * 114.00277 * 270.25919 * 5 4 3 7 7 O 1.42095 * 104.27812 * 191.07126 * 6 5 4 8 8 O 1.42106 * 104.27612 * 318.92898 * 6 5 4 9 9 C 1.81399 * 104.45043 * 74.99605 * 6 5 4 10 10 H 1.09001 * 112.85412 * 309.67326 * 9 6 5 11 11 C 1.53781 * 113.61054 * 80.86416 * 9 6 5 12 12 C 1.53959 * 87.01726 * 139.95197 * 11 9 6 13 13 H 1.09005 * 113.66239 * 220.06442 * 12 11 9 14 14 O 1.42900 * 113.53826 * 89.19001 * 12 11 9 15 15 C 1.42904 * 114.00064 * 112.49946 * 14 12 11 16 16 C 1.50703 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.38231 * 120.00234 * 269.73522 * 16 15 14 18 18 C 1.38236 * 120.00112 * 179.81241 * 17 16 15 19 19 C 1.38231 * 119.99795 * 0.39163 * 18 17 16 20 20 C 1.38239 * 120.00421 * 359.85542 * 19 18 17 21 21 C 1.38232 * 119.99710 * 90.00453 * 16 15 14 22 22 C 1.53777 * 87.11238 * 334.63572 * 12 11 9 23 23 C 1.38616 * 119.84685 * 180.29583 * 4 3 2 24 24 I 2.09500 * 120.00486 * 179.74254 * 23 4 3 25 25 C 1.38286 * 119.98896 * 359.71946 * 23 4 3 26 26 C 1.38250 * 120.14106 * 0.02650 * 25 23 4 27 27 C 1.50708 * 119.92301 * 179.97438 * 26 25 23 28 28 O 1.42892 * 109.46637 * 245.01964 * 27 26 25 29 29 Si 1.86298 * 109.46891 * 5.02039 * 27 26 25 30 30 C 1.38238 * 120.15034 * 359.97438 * 26 25 23 31 31 H 1.09006 * 109.47475 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47356 * 300.00393 * 1 2 3 33 33 H 1.09009 * 109.47326 * 60.00352 * 1 2 3 34 34 H 1.09003 * 113.61411 * 254.52668 * 11 9 6 35 35 H 1.09000 * 113.61948 * 25.43677 * 11 9 6 36 36 H 1.08993 * 109.47475 * 300.00364 * 15 14 12 37 37 H 1.09000 * 109.46919 * 60.00576 * 15 14 12 38 38 H 1.08000 * 119.99959 * 359.97438 * 17 16 15 39 39 H 1.07997 * 120.00171 * 180.22660 * 18 17 16 40 40 H 1.07999 * 119.99959 * 179.83833 * 19 18 17 41 41 H 1.07999 * 120.00476 * 179.97438 * 20 19 18 42 42 H 1.07999 * 120.00142 * 359.97438 * 21 16 15 43 43 H 1.09000 * 113.61473 * 270.81309 * 22 12 11 44 44 H 1.08994 * 113.68921 * 139.91999 * 22 12 11 45 45 H 1.08011 * 119.92724 * 180.02562 * 25 23 4 46 46 H 1.08994 * 109.46842 * 125.01766 * 27 26 25 47 47 H 0.96707 * 114.00016 * 180.02562 * 28 27 26 48 48 H 1.48500 * 110.00256 * 299.99579 * 29 27 26 49 49 H 1.48497 * 110.00134 * 61.32259 * 29 27 26 50 50 H 1.08002 * 119.99176 * 179.97438 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4357 1.2862 -0.0045 5 8 4.1793 0.1474 -0.0096 6 16 4.5172 -0.3776 1.3784 7 8 5.4917 -1.3850 1.1445 8 8 4.8338 0.7883 2.1266 9 6 2.9698 -1.1145 1.9727 10 1 2.1152 -0.4460 1.8686 11 6 2.7138 -2.5305 1.4304 12 6 2.1975 -2.8885 2.8359 13 1 2.5037 -3.8779 3.1757 14 8 0.7992 -2.6494 3.0082 15 6 0.0228 -3.8373 3.1764 16 6 -1.4282 -3.4687 3.3493 17 6 -1.9374 -3.2402 4.6139 18 6 -3.2675 -2.8983 4.7721 19 6 -4.0902 -2.7928 3.6663 20 6 -3.5823 -3.0262 2.4020 21 6 -2.2513 -3.3645 2.2436 22 6 3.0869 -1.7521 3.3672 23 6 4.0602 2.5237 0.0018 24 53 6.1519 2.6415 0.0033 25 6 3.3024 3.6804 0.0065 26 6 1.9219 3.6058 0.0056 27 6 1.1008 4.8696 0.0114 28 8 0.3638 4.9530 1.2327 29 14 2.2298 6.3443 -0.1348 30 6 1.2930 2.3748 -0.0006 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8901 34 1 1.9451 -2.5702 0.6586 35 1 3.6234 -3.0622 1.1509 36 1 0.1346 -4.4720 2.2975 37 1 0.3682 -4.3751 4.0593 38 1 -1.2955 -3.3263 5.4782 39 1 -3.6644 -2.7162 5.7599 40 1 -5.1299 -2.5282 3.7901 41 1 -4.2251 -2.9442 1.5381 42 1 -1.8544 -3.5468 1.2559 43 1 4.0987 -2.0705 3.6182 44 1 2.6202 -1.1635 4.1570 45 1 3.7901 4.6441 0.0110 46 1 0.4087 4.8570 -0.8305 47 1 -0.1888 5.7433 1.3055 48 1 3.1784 6.3730 1.0074 49 1 2.9786 6.2857 -1.4157 50 1 0.2144 2.3196 -0.0008 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_80155_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:52:21 Heat of formation + Delta-G solvation = -84.738547 kcal Electronic energy + Delta-G solvation = -40704.018827 eV Core-core repulsion = 35425.244019 eV Total energy + Delta-G solvation = -5278.774808 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 533.023 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -42.75002 -40.87091 -40.41956 -40.00035 -39.39996 -38.16794 -37.52039 -37.06720 -37.01805 -33.54874 -32.77864 -32.20158 -31.91175 -29.44382 -28.74980 -27.54338 -27.13984 -26.97420 -26.48826 -23.68297 -23.59654 -23.30797 -22.38288 -21.89596 -20.99512 -19.67194 -19.31831 -18.89632 -18.57393 -18.52458 -18.14671 -17.78477 -17.32964 -17.14345 -16.85590 -16.70288 -16.59135 -16.11229 -15.98330 -15.68015 -15.42726 -15.32802 -15.12437 -14.84617 -14.43520 -14.41710 -14.36530 -14.22479 -14.12051 -13.95181 -13.78349 -13.67370 -13.53734 -13.39934 -13.26944 -13.15114 -13.05662 -13.00155 -12.68339 -12.56622 -12.39389 -12.17008 -12.09043 -12.06116 -11.95947 -11.77531 -11.31431 -11.20812 -10.99426 -10.64665 -10.58138 -10.06897 -9.92621 -9.86572 -9.73622 -5.13911 -1.06507 -0.35678 -0.27971 -0.19499 0.23075 0.39687 0.98645 1.05490 1.50689 1.71981 1.83523 1.91868 2.32776 2.59945 2.82342 2.91530 2.94104 3.03576 3.23621 3.38231 3.40605 3.42021 3.51860 3.70588 3.74133 3.77890 3.78620 3.89888 3.93229 3.99961 4.00027 4.08290 4.11157 4.14243 4.20368 4.30809 4.31987 4.35416 4.40394 4.44893 4.50632 4.60761 4.63000 4.66914 4.73953 4.80954 4.84943 4.90940 4.94949 4.96190 5.02101 5.43644 5.51698 5.54777 5.78212 5.96261 6.08346 6.38394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.300 6.300 3 C 0.133 3.867 4 C 0.072 3.928 5 O -0.646 6.646 6 S 2.576 3.424 7 O -0.917 6.917 8 O -0.941 6.941 9 C -0.628 4.628 10 H 0.162 0.838 11 C -0.124 4.124 12 C 0.080 3.920 13 H 0.088 0.912 14 O -0.355 6.355 15 C 0.100 3.900 16 C -0.093 4.093 17 C -0.098 4.098 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.110 4.110 23 C -0.042 4.042 24 I 0.017 6.983 25 C -0.113 4.113 26 C -0.013 4.013 27 C -0.075 4.075 28 O -0.541 6.541 29 Si 0.677 3.323 30 C -0.148 4.148 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.142 0.858 46 H 0.086 0.914 47 H 0.388 0.612 48 H -0.241 1.241 49 H -0.246 1.246 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 2.088 -0.659 9.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.213 6.213 3 C 0.083 3.917 4 C 0.026 3.974 5 O -0.604 6.604 6 S 2.673 3.327 7 O -0.916 6.916 8 O -0.939 6.939 9 C -0.736 4.736 10 H 0.179 0.821 11 C -0.163 4.163 12 C 0.021 3.979 13 H 0.106 0.894 14 O -0.274 6.274 15 C 0.024 3.976 16 C -0.093 4.093 17 C -0.116 4.116 18 C -0.140 4.140 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.184 4.184 24 I 0.166 6.834 25 C -0.133 4.133 26 C -0.016 4.016 27 C -0.186 4.186 28 O -0.348 6.348 29 Si 0.577 3.423 30 C -0.167 4.167 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.159 0.841 46 H 0.103 0.897 47 H 0.236 0.764 48 H -0.165 1.165 49 H -0.171 1.171 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.129 1.951 -0.832 6.485 hybrid contribution -2.051 -1.019 -0.001 2.290 sum -8.179 0.932 -0.833 8.274 Atomic orbital electron populations 1.23312 0.76385 1.05410 1.02250 1.86226 1.23062 1.24531 1.87435 1.18931 0.89646 0.86505 0.96628 1.16756 0.85811 0.82158 1.12678 1.85759 1.71993 1.44776 1.57884 1.06199 0.77306 0.75568 0.73650 1.93643 1.55133 1.60513 1.82265 1.93697 1.82836 1.45696 1.71671 1.32181 1.23122 1.09960 1.08290 0.82055 1.23198 1.03596 0.90540 0.98919 1.22849 0.81928 0.98067 0.95091 0.89381 1.87965 1.16378 1.30244 1.92765 1.21444 0.87886 0.87269 1.00990 1.19555 0.94032 1.01991 0.93724 1.21099 0.95619 0.98136 0.96746 1.21208 0.93814 0.99850 0.99131 1.21265 1.00020 0.99018 0.92742 1.21188 0.95430 0.99966 0.97574 1.21058 0.93756 0.98838 0.98189 1.22885 1.01158 0.97336 0.93530 1.24409 0.98878 0.92826 1.02308 1.96995 0.89330 1.98951 1.98124 1.20706 0.93026 0.97020 1.02592 1.19355 0.92271 0.94312 0.95636 1.24695 1.01211 1.02104 0.90597 1.86487 1.63223 1.48794 1.36323 0.95190 0.81288 0.84234 0.81604 1.21145 1.01311 0.89904 1.04324 0.87022 0.91510 0.91718 0.88518 0.87278 0.91995 0.91970 0.85879 0.85729 0.85832 0.85792 0.85996 0.87860 0.88171 0.84085 0.89661 0.76377 1.16518 1.17072 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 101.05 0.99 0.94 16 2 O -0.30 -0.15 7.14 -34.24 -0.24 -0.40 16 3 C 0.13 0.27 5.91 -39.13 -0.23 0.04 16 4 C 0.07 0.32 4.80 -39.11 -0.19 0.13 16 5 O -0.65 -3.36 9.09 -54.27 -0.49 -3.85 16 6 S 2.58 13.00 4.98 -107.50 -0.54 12.47 16 7 O -0.92 -6.59 17.31 -67.04 -1.16 -7.75 16 8 O -0.94 -6.19 14.64 -67.04 -0.98 -7.17 16 9 C -0.63 -1.11 3.14 -25.92 -0.08 -1.19 16 10 H 0.16 0.22 5.36 -51.93 -0.28 -0.05 16 11 C -0.12 -0.05 7.43 -25.83 -0.19 -0.24 16 12 C 0.08 -0.02 4.38 -25.83 -0.11 -0.14 16 13 H 0.09 -0.19 7.87 -51.93 -0.41 -0.60 16 14 O -0.35 -0.21 10.25 -35.23 -0.36 -0.57 16 15 C 0.10 -0.08 5.90 36.01 0.21 0.13 16 16 C -0.09 -0.02 5.51 -104.63 -0.58 -0.60 16 17 C -0.10 -0.03 9.70 -39.58 -0.38 -0.41 16 18 C -0.12 0.01 10.05 -39.58 -0.40 -0.39 16 19 C -0.11 0.04 10.05 -39.58 -0.40 -0.36 16 20 C -0.12 0.07 10.05 -39.58 -0.40 -0.33 16 21 C -0.10 0.04 9.70 -39.58 -0.38 -0.35 16 22 C -0.11 -0.05 7.50 -25.92 -0.19 -0.24 16 23 C -0.04 -0.20 5.56 -39.42 -0.22 -0.42 16 24 I 0.02 0.09 37.77 -73.02 -2.76 -2.67 16 25 C -0.11 -0.35 8.37 -39.56 -0.33 -0.68 16 26 C -0.01 -0.02 5.38 -104.61 -0.56 -0.58 16 27 C -0.08 0.13 2.79 36.01 0.10 0.23 16 28 O -0.54 0.94 12.81 -35.23 -0.45 0.49 16 29 Si 0.68 -1.32 29.84 -169.99 -5.07 -6.40 16 30 C -0.15 -0.08 8.67 -39.46 -0.34 -0.42 16 31 H 0.11 -0.44 8.14 -51.93 -0.42 -0.86 16 32 H 0.07 -0.20 7.66 -51.93 -0.40 -0.60 16 33 H 0.06 -0.26 7.66 -51.92 -0.40 -0.66 16 34 H 0.10 -0.04 8.07 -51.93 -0.42 -0.46 16 35 H 0.11 0.02 7.46 -51.93 -0.39 -0.37 16 36 H 0.06 -0.12 8.09 -51.93 -0.42 -0.54 16 37 H 0.06 -0.11 8.08 -51.93 -0.42 -0.53 16 38 H 0.12 -0.11 8.06 -52.49 -0.42 -0.54 16 39 H 0.12 -0.21 8.06 -52.49 -0.42 -0.63 16 40 H 0.12 -0.25 8.06 -52.49 -0.42 -0.67 16 41 H 0.12 -0.29 8.06 -52.49 -0.42 -0.72 16 42 H 0.12 -0.24 8.06 -52.49 -0.42 -0.67 16 43 H 0.10 -0.08 8.10 -51.93 -0.42 -0.50 16 44 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 45 H 0.14 0.34 4.85 -52.48 -0.25 0.08 16 46 H 0.09 -0.36 7.96 -51.93 -0.41 -0.77 16 47 H 0.39 -2.61 8.74 45.56 0.40 -2.21 16 48 H -0.24 -0.32 7.05 56.52 0.40 0.07 16 49 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 50 H 0.16 -0.34 6.30 -52.49 -0.33 -0.67 16 LS Contribution 445.48 15.07 6.71 6.71 Total: 0.00 -10.64 445.48 -15.34 -25.98 By element: Atomic # 1 Polarization: -5.67 SS G_CDS: -6.31 Total: -11.98 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -3.69 Total: -4.86 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -3.69 Total: -19.25 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -5.07 Total: -6.40 kcal Atomic # 16 Polarization: 13.00 SS G_CDS: -0.54 Total: 12.47 kcal Atomic # 53 Polarization: 0.09 SS G_CDS: -2.76 Total: -2.67 kcal Total LS contribution 6.71 Total: 6.71 kcal Total: -10.64 -15.34 -25.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80155_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.759 kcal (2) G-P(sol) polarization free energy of solvation -10.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds