Wall clock time and date at job start Mon Mar 8 2021 11:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35996 * 117.00111 * 2 1 4 4 C 1.39134 * 120.06926 * 180.21202 * 3 2 1 5 5 O 1.36010 * 120.07731 * 0.03631 * 4 3 2 6 6 S 1.52194 * 114.00277 * 270.25919 * 5 4 3 7 7 O 1.42095 * 104.27812 * 191.07126 * 6 5 4 8 8 O 1.42106 * 104.27612 * 318.92898 * 6 5 4 9 9 C 1.81399 * 104.45043 * 74.99605 * 6 5 4 10 10 H 1.09001 * 112.85412 * 309.67326 * 9 6 5 11 11 C 1.53781 * 113.61054 * 80.86416 * 9 6 5 12 12 C 1.53959 * 87.01726 * 139.95197 * 11 9 6 13 13 H 1.09005 * 113.66239 * 220.06442 * 12 11 9 14 14 O 1.42900 * 113.53826 * 89.19001 * 12 11 9 15 15 C 1.42904 * 114.00064 * 112.49946 * 14 12 11 16 16 C 1.50703 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.38231 * 120.00234 * 269.73522 * 16 15 14 18 18 C 1.38236 * 120.00112 * 179.81241 * 17 16 15 19 19 C 1.38231 * 119.99795 * 0.39163 * 18 17 16 20 20 C 1.38239 * 120.00421 * 359.85542 * 19 18 17 21 21 C 1.38232 * 119.99710 * 90.00453 * 16 15 14 22 22 C 1.53777 * 87.11238 * 334.63572 * 12 11 9 23 23 C 1.38616 * 119.84685 * 180.29583 * 4 3 2 24 24 I 2.09500 * 120.00486 * 179.74254 * 23 4 3 25 25 C 1.38286 * 119.98896 * 359.71946 * 23 4 3 26 26 C 1.38250 * 120.14106 * 0.02650 * 25 23 4 27 27 C 1.50708 * 119.92301 * 179.97438 * 26 25 23 28 28 O 1.42892 * 109.46637 * 245.01964 * 27 26 25 29 29 Si 1.86298 * 109.46891 * 5.02039 * 27 26 25 30 30 C 1.38238 * 120.15034 * 359.97438 * 26 25 23 31 31 H 1.09006 * 109.47475 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47356 * 300.00393 * 1 2 3 33 33 H 1.09009 * 109.47326 * 60.00352 * 1 2 3 34 34 H 1.09003 * 113.61411 * 254.52668 * 11 9 6 35 35 H 1.09000 * 113.61948 * 25.43677 * 11 9 6 36 36 H 1.08993 * 109.47475 * 300.00364 * 15 14 12 37 37 H 1.09000 * 109.46919 * 60.00576 * 15 14 12 38 38 H 1.08000 * 119.99959 * 359.97438 * 17 16 15 39 39 H 1.07997 * 120.00171 * 180.22660 * 18 17 16 40 40 H 1.07999 * 119.99959 * 179.83833 * 19 18 17 41 41 H 1.07999 * 120.00476 * 179.97438 * 20 19 18 42 42 H 1.07999 * 120.00142 * 359.97438 * 21 16 15 43 43 H 1.09000 * 113.61473 * 270.81309 * 22 12 11 44 44 H 1.08994 * 113.68921 * 139.91999 * 22 12 11 45 45 H 1.08011 * 119.92724 * 180.02562 * 25 23 4 46 46 H 1.08994 * 109.46842 * 125.01766 * 27 26 25 47 47 H 0.96707 * 114.00016 * 180.02562 * 28 27 26 48 48 H 1.48500 * 110.00256 * 299.99579 * 29 27 26 49 49 H 1.48497 * 110.00134 * 61.32259 * 29 27 26 50 50 H 1.08002 * 119.99176 * 179.97438 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4357 1.2862 -0.0045 5 8 4.1793 0.1474 -0.0096 6 16 4.5172 -0.3776 1.3784 7 8 5.4917 -1.3850 1.1445 8 8 4.8338 0.7883 2.1266 9 6 2.9698 -1.1145 1.9727 10 1 2.1152 -0.4460 1.8686 11 6 2.7138 -2.5305 1.4304 12 6 2.1975 -2.8885 2.8359 13 1 2.5037 -3.8779 3.1757 14 8 0.7992 -2.6494 3.0082 15 6 0.0228 -3.8373 3.1764 16 6 -1.4282 -3.4687 3.3493 17 6 -1.9374 -3.2402 4.6139 18 6 -3.2675 -2.8983 4.7721 19 6 -4.0902 -2.7928 3.6663 20 6 -3.5823 -3.0262 2.4020 21 6 -2.2513 -3.3645 2.2436 22 6 3.0869 -1.7521 3.3672 23 6 4.0602 2.5237 0.0018 24 53 6.1519 2.6415 0.0033 25 6 3.3024 3.6804 0.0065 26 6 1.9219 3.6058 0.0056 27 6 1.1008 4.8696 0.0114 28 8 0.3638 4.9530 1.2327 29 14 2.2298 6.3443 -0.1348 30 6 1.2930 2.3748 -0.0006 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8901 34 1 1.9451 -2.5702 0.6586 35 1 3.6234 -3.0622 1.1509 36 1 0.1346 -4.4720 2.2975 37 1 0.3682 -4.3751 4.0593 38 1 -1.2955 -3.3263 5.4782 39 1 -3.6644 -2.7162 5.7599 40 1 -5.1299 -2.5282 3.7901 41 1 -4.2251 -2.9442 1.5381 42 1 -1.8544 -3.5468 1.2559 43 1 4.0987 -2.0705 3.6182 44 1 2.6202 -1.1635 4.1570 45 1 3.7901 4.6441 0.0110 46 1 0.4087 4.8570 -0.8305 47 1 -0.1888 5.7433 1.3055 48 1 3.1784 6.3730 1.0074 49 1 2.9786 6.2857 -1.4157 50 1 0.2144 2.3196 -0.0008 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80155_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:52:19 Heat of formation + Delta-G solvation = -83.892262 kcal Electronic energy + Delta-G solvation = -40703.982129 eV Core-core repulsion = 35425.244019 eV Total energy + Delta-G solvation = -5278.738110 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 533.023 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.91743 -40.87273 -40.50445 -39.94253 -39.40094 -38.54752 -37.44861 -37.41367 -37.02494 -33.69041 -32.68349 -32.26780 -31.80128 -29.59766 -28.62259 -27.52575 -27.15381 -26.99238 -26.48046 -23.74351 -23.49134 -23.45475 -22.27905 -22.02557 -21.05796 -19.91116 -19.50090 -18.97641 -18.68607 -18.39995 -18.17200 -17.74593 -17.32335 -17.13196 -16.97228 -16.62739 -16.56296 -16.17262 -15.94670 -15.72259 -15.40812 -15.29377 -15.18452 -14.85179 -14.54757 -14.41989 -14.28869 -14.23686 -14.16754 -14.09810 -13.82535 -13.70037 -13.65493 -13.61750 -13.43068 -13.36522 -13.17824 -12.92667 -12.65098 -12.58288 -12.41514 -12.12671 -12.06977 -12.04188 -11.87357 -11.74622 -11.51614 -11.39382 -11.23553 -10.59448 -10.46550 -10.20857 -9.83875 -9.83454 -9.77741 -5.02610 -1.31085 -0.53718 -0.47846 -0.39766 0.31772 0.48801 0.72309 1.19338 1.58938 1.72421 1.82988 1.94309 2.32849 2.40144 2.60320 2.86411 2.96211 3.01647 3.19079 3.29399 3.35757 3.42883 3.48764 3.59931 3.77973 3.86004 3.91170 3.93401 4.09867 4.14064 4.19106 4.22152 4.28810 4.31471 4.32153 4.34441 4.36430 4.44615 4.45737 4.52333 4.59243 4.65203 4.66959 4.71866 4.75855 4.77836 4.84504 4.86451 4.92688 5.07143 5.14444 5.54106 5.61684 5.64242 5.81127 6.07827 6.16551 6.87177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.306 6.306 3 C 0.139 3.861 4 C 0.044 3.956 5 O -0.654 6.654 6 S 2.565 3.435 7 O -0.952 6.952 8 O -0.967 6.967 9 C -0.610 4.610 10 H 0.168 0.832 11 C -0.126 4.126 12 C 0.087 3.913 13 H 0.111 0.889 14 O -0.366 6.366 15 C 0.098 3.902 16 C -0.105 4.105 17 C -0.114 4.114 18 C -0.136 4.136 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.058 4.058 24 I -0.008 7.008 25 C -0.130 4.130 26 C -0.017 4.017 27 C -0.070 4.070 28 O -0.556 6.556 29 Si 0.751 3.249 30 C -0.139 4.139 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.138 0.862 46 H 0.124 0.876 47 H 0.410 0.590 48 H -0.295 1.295 49 H -0.281 1.281 50 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 1.571 -0.910 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.219 6.219 3 C 0.089 3.911 4 C -0.002 4.002 5 O -0.612 6.612 6 S 2.666 3.334 7 O -0.950 6.950 8 O -0.965 6.965 9 C -0.721 4.721 10 H 0.186 0.814 11 C -0.164 4.164 12 C 0.027 3.973 13 H 0.129 0.871 14 O -0.285 6.285 15 C 0.022 3.978 16 C -0.105 4.105 17 C -0.132 4.132 18 C -0.153 4.153 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.125 4.125 22 C -0.158 4.158 23 C -0.201 4.201 24 I 0.142 6.858 25 C -0.150 4.150 26 C -0.020 4.020 27 C -0.181 4.181 28 O -0.366 6.366 29 Si 0.657 3.343 30 C -0.157 4.157 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.155 0.845 46 H 0.141 0.859 47 H 0.263 0.737 48 H -0.223 1.223 49 H -0.208 1.208 50 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.660 1.469 -1.096 9.832 hybrid contribution -1.069 -0.846 0.109 1.368 sum -10.729 0.622 -0.986 10.792 Atomic orbital electron populations 1.23654 0.74471 1.06852 1.03538 1.86233 1.24967 1.23802 1.86931 1.18982 0.88846 0.87661 0.95642 1.17040 0.86925 0.81659 1.14574 1.85716 1.72571 1.45240 1.57710 1.06410 0.78483 0.75040 0.73486 1.93587 1.57551 1.61044 1.82828 1.93653 1.84030 1.46728 1.72112 1.32072 1.20153 1.10483 1.09401 0.81425 1.23314 1.04016 0.89201 0.99889 1.22827 0.81593 0.98704 0.94146 0.87095 1.87944 1.16657 1.31167 1.92773 1.21546 0.87231 0.86985 1.02008 1.19755 0.94698 1.02184 0.93874 1.21299 0.96015 0.98605 0.97256 1.21437 0.93982 1.00039 0.99891 1.21529 1.00765 0.98999 0.92894 1.21463 0.95751 0.99561 0.98097 1.21306 0.93888 0.98562 0.98790 1.23086 1.02161 0.97773 0.92764 1.24418 0.97832 0.93832 1.03985 1.96917 0.91749 1.98948 1.98202 1.20851 0.94220 0.96438 1.03528 1.19776 0.91714 0.96194 0.94280 1.24653 1.01659 0.99670 0.92128 1.86438 1.63590 1.50520 1.36098 0.94527 0.79664 0.83057 0.77009 1.21518 1.02741 0.88810 1.02663 0.85652 0.90772 0.89802 0.87449 0.87245 0.90703 0.91160 0.85401 0.84810 0.84556 0.84157 0.84488 0.86972 0.87800 0.84520 0.85855 0.73706 1.22272 1.20823 0.79211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 9.81 113.37 1.11 1.05 16 2 O -0.31 0.08 7.14 -79.64 -0.57 -0.49 16 3 C 0.14 0.49 5.91 22.57 0.13 0.63 16 4 C 0.04 0.44 4.80 22.58 0.11 0.55 16 5 O -0.65 -8.04 9.09 -60.68 -0.55 -8.60 16 6 S 2.56 30.59 4.98 -56.49 -0.28 30.31 16 7 O -0.95 -15.96 17.31 -118.57 -2.05 -18.01 16 8 O -0.97 -15.18 14.64 -118.57 -1.74 -16.92 16 9 C -0.61 -2.19 3.14 31.12 0.10 -2.09 16 10 H 0.17 0.39 5.36 -2.39 -0.01 0.38 16 11 C -0.13 0.00 7.43 31.18 0.23 0.23 16 12 C 0.09 -0.17 4.38 31.18 0.14 -0.03 16 13 H 0.11 -0.70 7.87 -2.38 -0.02 -0.72 16 14 O -0.37 0.16 10.25 -148.98 -1.53 -1.36 16 15 C 0.10 -0.31 5.90 71.24 0.42 0.11 16 16 C -0.11 0.08 5.51 -19.87 -0.11 -0.03 16 17 C -0.11 0.00 9.70 22.27 0.22 0.21 16 18 C -0.14 0.08 10.05 22.27 0.22 0.31 16 19 C -0.12 0.20 10.05 22.27 0.22 0.43 16 20 C -0.13 0.34 10.05 22.27 0.22 0.56 16 21 C -0.11 0.24 9.70 22.27 0.22 0.46 16 22 C -0.12 -0.07 7.50 31.12 0.23 0.17 16 23 C -0.06 -0.66 5.56 22.37 0.12 -0.53 16 24 I -0.01 -0.11 37.77 -18.82 -0.71 -0.82 16 25 C -0.13 -0.97 8.37 22.28 0.19 -0.78 16 26 C -0.02 -0.03 5.38 -19.86 -0.11 -0.14 16 27 C -0.07 0.38 2.79 71.24 0.20 0.58 16 28 O -0.56 3.31 12.81 -148.98 -1.91 1.40 16 29 Si 0.75 -2.75 29.84 68.60 2.05 -0.71 16 30 C -0.14 0.10 8.67 22.35 0.19 0.29 16 31 H 0.13 -1.33 8.14 -2.38 -0.02 -1.35 16 32 H 0.07 -0.67 7.66 -2.38 -0.02 -0.69 16 33 H 0.08 -0.97 7.66 -2.38 -0.02 -0.99 16 34 H 0.11 -0.23 8.07 -2.39 -0.02 -0.25 16 35 H 0.11 0.03 7.46 -2.39 -0.02 0.01 16 36 H 0.07 -0.44 8.09 -2.39 -0.02 -0.46 16 37 H 0.07 -0.35 8.08 -2.39 -0.02 -0.37 16 38 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 39 H 0.13 -0.48 8.06 -2.91 -0.02 -0.50 16 40 H 0.14 -0.70 8.06 -2.91 -0.02 -0.72 16 41 H 0.14 -0.93 8.06 -2.91 -0.02 -0.95 16 42 H 0.14 -0.84 8.06 -2.91 -0.02 -0.86 16 43 H 0.11 -0.15 8.10 -2.39 -0.02 -0.17 16 44 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.14 0.97 4.85 -2.90 -0.01 0.96 16 46 H 0.12 -1.52 7.96 -2.39 -0.02 -1.54 16 47 H 0.41 -6.71 8.74 -74.05 -0.65 -7.35 16 48 H -0.29 -1.52 7.05 99.48 0.70 -0.82 16 49 H -0.28 -0.55 7.11 99.48 0.71 0.16 16 50 H 0.19 -1.52 6.30 -2.91 -0.02 -1.54 16 Total: 0.00 -28.49 445.48 -2.83 -31.33 By element: Atomic # 1 Polarization: -18.49 SS G_CDS: 0.39 Total: -18.10 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 4.06 Total: 1.96 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -8.34 Total: -43.98 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.05 Total: -0.71 kcal Atomic # 16 Polarization: 30.59 SS G_CDS: -0.28 Total: 30.31 kcal Atomic # 53 Polarization: -0.11 SS G_CDS: -0.71 Total: -0.82 kcal Total: -28.49 -2.83 -31.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80155_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.567 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds