Wall clock time and date at job start Mon Mar 8 2021 11:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47150 * 2 1 4 4 C 1.34230 * 117.00089 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99762 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99873 * 180.02562 * 4 3 2 7 7 H 1.08999 * 112.85139 * 48.80523 * 6 4 3 8 8 C 1.53786 * 113.61176 * 180.02562 * 6 4 3 9 9 C 1.53772 * 87.08565 * 89.11465 * 8 6 4 10 10 F 1.39906 * 113.61350 * 270.80223 * 9 8 6 11 11 C 1.52997 * 113.62054 * 139.98117 * 9 8 6 12 12 S 1.81400 * 109.47516 * 186.52981 * 11 9 8 13 13 O 1.42095 * 110.54065 * 68.37616 * 12 11 9 14 14 O 1.42097 * 110.53889 * 291.62279 * 12 11 9 15 15 O 1.52202 * 104.44574 * 179.97438 * 12 11 9 16 16 C 1.36022 * 114.00118 * 75.00137 * 15 12 11 17 17 C 1.38624 * 120.07739 * 270.01773 * 16 15 12 18 18 Cl 1.73601 * 120.00889 * 359.95884 * 17 16 15 19 19 C 1.38379 * 119.97817 * 179.70213 * 17 16 15 20 20 C 1.38212 * 120.12996 * 0.54936 * 19 17 16 21 21 C 1.50703 * 119.92061 * 179.72478 * 20 19 17 22 22 O 1.42896 * 109.47055 * 119.72837 * 21 20 19 23 23 Si 1.86304 * 109.46911 * 359.72729 * 21 20 19 24 24 C 1.38278 * 120.15793 * 359.45044 * 20 19 17 25 25 C 1.38561 * 120.01542 * 0.27311 * 24 20 19 26 26 O 1.35987 * 120.06270 * 180.02562 * 25 24 20 27 27 C 1.42902 * 117.00437 * 359.97438 * 26 25 24 28 28 C 1.53781 * 87.17366 * 25.38797 * 9 8 6 29 29 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47204 * 299.99168 * 1 2 3 31 31 H 1.09002 * 109.47421 * 60.00037 * 1 2 3 32 32 H 1.09001 * 109.46934 * 240.00106 * 2 1 3 33 33 H 1.09003 * 109.47453 * 120.00516 * 2 1 3 34 34 H 1.09003 * 113.61298 * 334.55781 * 8 6 4 35 35 H 1.09003 * 113.68736 * 203.67899 * 8 6 4 36 36 H 1.09001 * 109.46971 * 66.52226 * 11 9 8 37 37 H 1.09004 * 109.46685 * 306.53083 * 11 9 8 38 38 H 1.07994 * 119.93140 * 180.27335 * 19 17 16 39 39 H 1.09002 * 109.47152 * 239.72645 * 21 20 19 40 40 H 0.96703 * 114.00193 * 180.02562 * 22 21 20 41 41 H 1.48501 * 109.99997 * 298.67752 * 23 21 20 42 42 H 1.48495 * 110.00011 * 60.00027 * 23 21 20 43 43 H 1.07995 * 119.99115 * 180.29347 * 24 20 19 44 44 H 1.08998 * 109.46895 * 300.00473 * 27 26 25 45 45 H 1.09002 * 109.47154 * 59.99942 * 27 26 25 46 46 H 1.08996 * 109.47777 * 179.97438 * 27 26 25 47 47 H 1.09003 * 113.61545 * 89.15926 * 28 9 8 48 48 H 1.09002 * 113.61828 * 220.06079 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9206 2.9374 0.0000 7 1 3.4715 3.5810 0.7564 8 6 5.4582 2.9681 -0.0013 9 6 5.3791 2.9440 -1.5368 10 9 5.3580 1.6534 -2.0767 11 6 6.4015 3.8561 -2.2177 12 16 6.0859 3.8910 -4.0037 13 8 4.8626 4.5588 -4.2808 14 8 6.3803 2.6291 -4.5868 15 8 7.1549 4.8208 -4.5600 16 6 8.3961 4.2671 -4.6141 17 6 9.2572 4.3854 -3.5342 18 17 8.7525 5.2417 -2.1109 19 6 10.5172 3.8160 -3.5890 20 6 10.9238 3.1389 -4.7232 21 6 12.2994 2.5260 -4.7802 22 8 12.1845 1.1149 -4.9741 23 14 13.1958 2.8623 -3.1820 24 6 10.0694 3.0176 -5.8037 25 6 8.8042 3.5804 -5.7534 26 8 7.9630 3.4612 -6.8151 27 6 8.4491 2.7429 -7.9508 28 6 3.9844 3.5769 -1.3990 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.9131 2.0747 0.4266 35 1 5.8781 3.8905 0.3999 36 1 7.4065 3.4763 -2.0336 37 1 6.3145 4.8646 -1.8135 38 1 11.1858 3.9048 -2.7456 39 1 12.8576 2.9623 -5.6086 40 1 13.0332 0.6538 -5.0202 41 1 13.3499 4.3260 -2.9843 42 1 12.4449 2.2725 -2.0447 43 1 10.3882 2.4839 -6.6867 44 1 9.3412 3.2355 -8.3376 45 1 8.6961 1.7227 -7.6569 46 1 7.6810 2.7220 -8.7238 47 1 3.9993 4.6667 -1.3807 48 1 3.2512 3.1744 -2.0979 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80432_15494190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:41:54 Heat of formation + Delta-G solvation = -227.682915 kcal Electronic energy + Delta-G solvation = -41461.292127 eV Core-core repulsion = 35747.376294 eV Total energy + Delta-G solvation = -5713.915833 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 439.077 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -49.24135 -42.86726 -41.91740 -40.61778 -39.50757 -39.36666 -38.64416 -38.34169 -37.58934 -37.51923 -37.20873 -32.91052 -32.62549 -32.12538 -31.78499 -28.79354 -27.34526 -27.16886 -26.84900 -24.36857 -23.98873 -23.64252 -22.76534 -22.06922 -20.79211 -20.09725 -19.44922 -19.33673 -18.83759 -18.81253 -18.40147 -17.97112 -17.92869 -17.56822 -17.34147 -17.08339 -17.02311 -16.86342 -16.69147 -16.31753 -16.09207 -15.91003 -15.36738 -15.27765 -15.09391 -14.81984 -14.70485 -14.52077 -14.39454 -14.25918 -14.14990 -13.88773 -13.87191 -13.63649 -13.58182 -13.52177 -13.42373 -13.25581 -13.11762 -12.98934 -12.94970 -12.80575 -12.66483 -12.59191 -12.46202 -12.38685 -12.15279 -11.96886 -11.67788 -11.63442 -11.60611 -11.47693 -10.55709 -10.21125 -9.84132 -4.94678 -1.50987 -0.65175 -0.39962 0.19672 0.64122 0.95017 1.22325 1.47926 1.64875 1.79050 1.83377 1.96611 2.13229 2.49329 2.60277 2.67483 2.87255 2.98315 3.03477 3.13260 3.21079 3.29803 3.46306 3.54327 3.57232 3.72190 3.82353 3.89925 3.97411 4.02528 4.05933 4.16812 4.23320 4.24136 4.24865 4.26307 4.41196 4.42699 4.47616 4.49226 4.53659 4.59159 4.68899 4.75408 4.75510 4.83462 4.90387 4.92516 5.06815 5.35052 5.83131 6.55696 6.87677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.465 3.535 5 O -0.526 6.526 6 C -0.107 4.107 7 H 0.171 0.829 8 C -0.111 4.111 9 C 0.070 3.930 10 F -0.195 7.195 11 C -0.657 4.657 12 S 2.575 3.425 13 O -0.943 6.943 14 O -0.961 6.961 15 O -0.645 6.645 16 C 0.008 3.992 17 C -0.012 4.012 18 Cl -0.016 7.016 19 C -0.146 4.146 20 C -0.006 4.006 21 C -0.082 4.082 22 O -0.560 6.560 23 Si 0.764 3.236 24 C -0.158 4.158 25 C 0.164 3.836 26 O -0.321 6.321 27 C 0.007 3.993 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.196 0.804 38 H 0.158 0.842 39 H 0.120 0.880 40 H 0.410 0.590 41 H -0.274 1.274 42 H -0.289 1.289 43 H 0.183 0.817 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.122 0.878 47 H 0.165 0.835 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 1.756 1.346 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.414 6.414 6 C -0.126 4.126 7 H 0.188 0.812 8 C -0.149 4.149 9 C 0.051 3.949 10 F -0.175 7.175 11 C -0.785 4.785 12 S 2.673 3.327 13 O -0.941 6.941 14 O -0.960 6.960 15 O -0.603 6.603 16 C -0.036 4.036 17 C -0.041 4.041 18 Cl 0.014 6.986 19 C -0.164 4.164 20 C -0.008 4.008 21 C -0.192 4.192 22 O -0.371 6.371 23 Si 0.669 3.331 24 C -0.177 4.177 25 C 0.114 3.886 26 O -0.233 6.233 27 C -0.086 4.086 28 C -0.188 4.188 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.213 0.787 38 H 0.175 0.825 39 H 0.138 0.862 40 H 0.263 0.737 41 H -0.200 1.200 42 H -0.217 1.217 43 H 0.200 0.800 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.141 0.859 47 H 0.183 0.817 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.441 2.136 1.465 7.879 hybrid contribution -0.613 -0.355 0.001 0.708 sum 6.829 1.781 1.465 7.208 Atomic orbital electron populations 1.21828 0.90348 1.04383 1.03861 1.23284 0.97152 0.79228 1.02412 1.86489 1.23860 1.33587 1.83538 1.23699 0.80896 0.92794 0.71766 1.90696 1.61055 1.44028 1.45643 1.22157 0.97921 0.90515 1.01982 0.81171 1.23666 0.93422 1.07699 0.90090 1.21999 0.96748 0.78373 0.97811 1.92979 1.97307 1.39940 1.87301 1.31765 1.10440 1.11570 1.24743 1.06063 0.74565 0.73448 0.78614 1.93606 1.42352 1.74152 1.83959 1.93627 1.82932 1.45169 1.74258 1.85748 1.27753 1.61381 1.85440 1.17134 0.83473 1.07161 0.95800 1.20706 0.95097 0.99375 0.88945 1.98404 1.90257 1.74744 1.35229 1.20862 0.94214 1.01500 0.99864 1.19772 0.96378 0.93271 0.91332 1.24880 0.94382 0.85646 1.14274 1.86448 1.37647 1.16518 1.96451 0.94077 0.86225 0.79548 0.73299 1.21517 0.90972 1.02446 1.02738 1.19119 0.90380 0.92130 0.86955 1.86165 1.41311 1.71449 1.24376 1.23685 1.03468 0.96526 0.84944 1.24081 0.93682 1.05262 0.95773 0.88425 0.90774 0.91438 0.92073 0.90957 0.89148 0.81870 0.82104 0.78668 0.82530 0.86196 0.73701 1.20036 1.21650 0.79984 0.89207 0.90766 0.85949 0.81733 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.11 10.29 71.98 0.74 0.85 16 2 C 0.05 0.25 6.19 71.98 0.45 0.70 16 3 O -0.36 -2.56 10.22 -51.41 -0.53 -3.08 16 4 C 0.46 3.85 6.92 71.24 0.49 4.34 16 5 O -0.53 -7.91 14.48 21.95 0.32 -7.59 16 6 C -0.11 0.05 4.46 -10.95 -0.05 0.00 16 7 H 0.17 -1.43 8.14 -2.39 -0.02 -1.45 16 8 C -0.11 0.16 6.93 31.12 0.22 0.38 16 9 C 0.07 0.35 1.55 -10.27 -0.02 0.34 16 10 F -0.19 -2.89 14.90 44.97 0.67 -2.22 16 11 C -0.66 -1.86 3.64 71.98 0.26 -1.59 16 12 S 2.57 32.03 4.91 -56.49 -0.28 31.76 16 13 O -0.94 -15.34 17.84 -118.57 -2.11 -17.45 16 14 O -0.96 -17.80 15.42 -117.14 -1.81 -19.61 16 15 O -0.64 -7.37 9.37 -60.81 -0.57 -7.94 16 16 C 0.01 0.08 4.81 22.58 0.11 0.19 16 17 C -0.01 -0.06 5.62 22.40 0.13 0.06 16 18 Cl -0.02 -0.01 23.66 -2.72 -0.06 -0.07 16 19 C -0.15 -0.37 8.45 22.30 0.19 -0.18 16 20 C -0.01 -0.01 5.42 -19.86 -0.11 -0.11 16 21 C -0.08 0.52 2.81 71.24 0.20 0.72 16 22 O -0.56 3.18 12.74 -148.98 -1.90 1.28 16 23 Si 0.76 -5.35 29.78 68.60 2.04 -3.31 16 24 C -0.16 -0.36 8.60 22.36 0.19 -0.17 16 25 C 0.16 1.41 5.93 22.57 0.13 1.54 16 26 O -0.32 -3.09 9.73 -72.59 -0.71 -3.79 16 27 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 28 C -0.15 -0.14 6.79 31.18 0.21 0.07 16 29 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.06 0.41 8.13 -2.39 -0.02 0.39 16 33 H 0.07 0.31 8.13 -2.39 -0.02 0.29 16 34 H 0.09 0.22 7.43 -2.39 -0.02 0.21 16 35 H 0.16 -1.72 8.10 -2.39 -0.02 -1.74 16 36 H 0.16 0.19 5.54 -2.39 -0.01 0.17 16 37 H 0.20 -1.10 7.18 -2.39 -0.02 -1.11 16 38 H 0.16 -0.06 4.87 -2.91 -0.01 -0.07 16 39 H 0.12 -1.48 7.96 -2.39 -0.02 -1.50 16 40 H 0.41 -6.65 8.74 -74.05 -0.65 -7.29 16 41 H -0.27 0.72 7.11 99.48 0.71 1.43 16 42 H -0.29 -0.19 7.11 99.48 0.71 0.52 16 43 H 0.18 -0.67 6.30 -2.91 -0.02 -0.68 16 44 H 0.09 -0.57 7.66 -2.39 -0.02 -0.59 16 45 H 0.07 -0.17 7.66 -2.39 -0.02 -0.19 16 46 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H 0.16 -1.11 8.06 -2.39 -0.02 -1.13 16 48 H 0.08 0.38 8.09 -2.39 -0.02 0.37 16 Total: 0.00 -36.98 420.06 -0.24 -37.22 By element: Atomic # 1 Polarization: -13.87 SS G_CDS: 0.44 Total: -13.43 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 4.26 Total: 8.25 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -7.30 Total: -58.19 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.67 Total: -2.22 kcal Atomic # 14 Polarization: -5.35 SS G_CDS: 2.04 Total: -3.31 kcal Atomic # 16 Polarization: 32.03 SS G_CDS: -0.28 Total: 31.76 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.06 Total: -0.07 kcal Total: -36.98 -0.24 -37.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80432_15494190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.465 kcal (2) G-P(sol) polarization free energy of solvation -36.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds