Wall clock time and date at job start Mon Mar 8 2021 11:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 117.00110 * 2 1 4 4 C 1.39107 * 120.06867 * 180.02562 * 3 2 1 5 5 O 1.36021 * 120.07292 * 359.95341 * 4 3 2 6 6 S 1.52197 * 114.00322 * 94.15741 * 5 4 3 7 7 O 1.42101 * 104.27505 * 40.10764 * 6 5 4 8 8 O 1.42102 * 104.28041 * 167.96299 * 6 5 4 9 9 C 1.81399 * 104.45061 * 284.03818 * 6 5 4 10 10 H 1.08998 * 112.85067 * 53.03384 * 9 6 5 11 11 C 1.53784 * 113.61636 * 184.23700 * 9 6 5 12 12 C 1.53786 * 87.07968 * 139.97789 * 11 9 6 13 13 H 1.08999 * 113.60773 * 219.93550 * 12 11 9 14 14 O 1.42897 * 113.61426 * 89.11883 * 12 11 9 15 15 C 1.42898 * 113.99910 * 149.99556 * 14 12 11 16 16 C 1.50697 * 109.46846 * 180.02562 * 15 14 12 17 17 C 1.38240 * 119.99977 * 269.72403 * 16 15 14 18 18 C 1.38236 * 120.00322 * 179.81068 * 17 16 15 19 19 C 1.38237 * 119.99608 * 0.40112 * 18 17 16 20 20 C 1.38234 * 120.00120 * 359.85517 * 19 18 17 21 21 C 1.38233 * 120.00294 * 90.00445 * 16 15 14 22 22 C 1.53776 * 87.08229 * 334.56707 * 12 11 9 23 23 C 1.38658 * 119.84957 * 179.97438 * 4 3 2 24 24 Cl 1.73604 * 120.01192 * 179.97438 * 23 4 3 25 25 C 1.38338 * 119.97725 * 359.97438 * 23 4 3 26 26 C 1.38245 * 120.13410 * 0.02562 * 25 23 4 27 27 C 1.50699 * 119.92498 * 179.97438 * 26 25 23 28 28 O 1.42909 * 109.47324 * 245.00107 * 27 26 25 29 29 Si 1.86303 * 109.47042 * 4.99715 * 27 26 25 30 30 C 1.38237 * 120.15724 * 359.97438 * 26 25 23 31 31 H 1.08997 * 109.46859 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46872 * 300.00335 * 1 2 3 33 33 H 1.08998 * 109.46717 * 60.00065 * 1 2 3 34 34 H 1.08995 * 113.61220 * 254.52919 * 11 9 6 35 35 H 1.09003 * 113.61200 * 25.42673 * 11 9 6 36 36 H 1.08997 * 109.47032 * 299.99621 * 15 14 12 37 37 H 1.08993 * 109.46988 * 60.00011 * 15 14 12 38 38 H 1.08007 * 119.99862 * 0.02562 * 17 16 15 39 39 H 1.07995 * 120.00344 * 180.23705 * 18 17 16 40 40 H 1.07998 * 119.99761 * 179.83489 * 19 18 17 41 41 H 1.08001 * 120.00422 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.99785 * 359.97438 * 21 16 15 43 43 H 1.09006 * 113.61556 * 270.88703 * 22 12 11 44 44 H 1.08999 * 113.61312 * 139.98080 * 22 12 11 45 45 H 1.08003 * 119.92916 * 179.97438 * 25 23 4 46 46 H 1.09000 * 109.47540 * 124.99984 * 27 26 25 47 47 H 0.96697 * 114.00016 * 179.97438 * 28 27 26 48 48 H 1.48501 * 109.99956 * 178.68090 * 29 27 26 49 49 H 1.48498 * 110.00212 * 300.00335 * 29 27 26 50 50 H 1.07996 * 119.99220 * 180.27520 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4355 1.2862 -0.0005 5 8 4.1792 0.1472 -0.0001 6 16 4.6015 -0.3169 -1.3867 7 8 4.9395 0.8824 -2.0698 8 8 5.5782 -1.3188 -1.1385 9 6 3.1016 -1.0516 -2.0946 10 1 2.2427 -0.3817 -2.0543 11 6 3.3212 -1.6896 -3.4765 12 6 2.3929 -2.8246 -3.0127 13 1 2.7214 -3.8143 -3.3300 14 8 1.0118 -2.5834 -3.2888 15 6 0.2483 -3.7700 -3.5144 16 6 -1.1852 -3.3992 -3.7948 17 6 -2.0896 -3.2992 -2.7541 18 6 -3.4036 -2.9552 -3.0108 19 6 -3.8152 -2.7194 -4.3093 20 6 -2.9121 -2.8246 -5.3505 21 6 -1.5972 -3.1648 -5.0933 22 6 2.8052 -2.4682 -1.5748 23 6 4.0603 2.5240 -0.0011 24 17 5.7936 2.6218 -0.0011 25 6 3.3020 3.6810 -0.0016 26 6 1.9216 3.6061 -0.0011 27 6 1.1001 4.8695 -0.0011 28 8 0.3635 4.9588 1.2203 29 14 2.2286 6.3439 -0.1549 30 6 1.2929 2.3750 -0.0005 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.9143 -1.1010 -4.2987 35 1 4.3484 -2.0095 -3.6514 36 1 0.6577 -4.3085 -4.3690 37 1 0.2933 -4.4047 -2.6295 38 1 -1.7687 -3.4864 -1.7399 39 1 -4.1092 -2.8733 -2.1974 40 1 -4.8424 -2.4533 -4.5102 41 1 -3.2338 -2.6408 -6.3650 42 1 -0.8916 -3.2470 -5.9069 43 1 3.6914 -3.0010 -1.2298 44 1 1.9816 -2.5083 -0.8618 45 1 3.7895 4.6448 -0.0016 46 1 0.4076 4.8527 -0.8426 47 1 -0.1886 5.7496 1.2896 48 1 1.4285 7.5945 -0.1881 49 1 3.1778 6.3783 0.9866 50 1 0.2144 2.3195 -0.0046 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80432_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:51:20 Heat of formation + Delta-G solvation = -110.987910 kcal Electronic energy + Delta-G solvation = -40695.869312 eV Core-core repulsion = 35390.471500 eV Total energy + Delta-G solvation = -5305.397812 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.087 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.68209 -40.79566 -40.42768 -39.91543 -39.33613 -38.45222 -38.04712 -37.33411 -37.20585 -36.98284 -32.66322 -32.48324 -31.78849 -31.62113 -28.69113 -27.48462 -27.11054 -26.93630 -26.43497 -24.07789 -23.49059 -23.47401 -22.26297 -22.06277 -21.05718 -19.79732 -19.45636 -18.96533 -18.72435 -18.47075 -18.15892 -17.71547 -17.27199 -17.01227 -16.88803 -16.62799 -16.56049 -16.37303 -16.05291 -15.94928 -15.67405 -15.44281 -15.25988 -14.83851 -14.70357 -14.44105 -14.28551 -14.27383 -14.15453 -13.97259 -13.86985 -13.73910 -13.61404 -13.53852 -13.37226 -13.29583 -13.19039 -13.14216 -12.97500 -12.81039 -12.53921 -12.25989 -12.10344 -12.03332 -12.01054 -11.85146 -11.84001 -11.70786 -11.21023 -10.61262 -10.54779 -10.12487 -9.82232 -9.76447 -9.70735 -4.93478 -1.19123 -0.39677 -0.24691 0.33205 0.50057 0.56022 0.88365 1.19774 1.56340 1.86784 1.89997 1.98507 2.42188 2.45951 2.71050 2.94462 2.99797 3.06895 3.26102 3.41928 3.47056 3.50712 3.52056 3.76350 3.82973 3.86905 3.93383 3.96417 4.15588 4.16297 4.23543 4.30396 4.33649 4.35404 4.36729 4.38284 4.43420 4.48883 4.55314 4.62998 4.65408 4.69457 4.72577 4.77092 4.79438 4.88236 4.91048 4.93685 5.04109 5.08493 5.15755 5.55315 5.62788 5.65752 5.91029 6.09192 6.20470 6.55746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.308 6.308 3 C 0.148 3.852 4 C 0.015 3.985 5 O -0.654 6.654 6 S 2.572 3.428 7 O -0.964 6.964 8 O -0.960 6.960 9 C -0.606 4.606 10 H 0.166 0.834 11 C -0.117 4.117 12 C 0.084 3.916 13 H 0.109 0.891 14 O -0.366 6.366 15 C 0.099 3.901 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.113 4.113 22 C -0.127 4.127 23 C 0.011 3.989 24 Cl -0.039 7.039 25 C -0.138 4.138 26 C -0.001 4.001 27 C -0.076 4.076 28 O -0.550 6.550 29 Si 0.736 3.264 30 C -0.158 4.158 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.163 0.837 46 H 0.123 0.877 47 H 0.403 0.597 48 H -0.271 1.271 49 H -0.296 1.296 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 0.229 -3.678 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.221 6.221 3 C 0.098 3.902 4 C -0.029 4.029 5 O -0.612 6.612 6 S 2.673 3.327 7 O -0.962 6.962 8 O -0.958 6.958 9 C -0.717 4.717 10 H 0.184 0.816 11 C -0.155 4.155 12 C 0.025 3.975 13 H 0.127 0.873 14 O -0.285 6.285 15 C 0.023 3.977 16 C -0.105 4.105 17 C -0.126 4.126 18 C -0.150 4.150 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.131 4.131 22 C -0.166 4.166 23 C -0.018 4.018 24 Cl -0.009 7.009 25 C -0.157 4.157 26 C -0.002 4.002 27 C -0.186 4.186 28 O -0.361 6.361 29 Si 0.640 3.360 30 C -0.177 4.177 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.180 0.820 46 H 0.141 0.859 47 H 0.254 0.746 48 H -0.197 1.197 49 H -0.223 1.223 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.978 0.513 -2.954 9.465 hybrid contribution -0.846 -0.070 0.780 1.153 sum -9.824 0.442 -2.174 10.072 Atomic orbital electron populations 1.23610 0.74738 1.06648 1.03340 1.86205 1.24657 1.24081 1.87122 1.18848 0.88698 0.87427 0.95208 1.17126 0.87000 0.81452 1.17279 1.85695 1.72217 1.45787 1.57542 1.06181 0.77966 0.74879 0.73664 1.93632 1.83507 1.44586 1.74524 1.93583 1.57548 1.61838 1.82813 1.31946 1.19822 1.10086 1.09894 0.81624 1.23080 1.01702 0.97581 0.93186 1.22816 0.81998 0.98856 0.93863 0.87341 1.87939 1.18773 1.31072 1.90746 1.21527 0.87639 0.87056 1.01492 1.19765 0.94726 1.02102 0.93875 1.21306 0.93405 0.98589 0.99305 1.21452 0.96385 0.99640 0.97502 1.21524 1.00535 0.99071 0.93126 1.21441 0.93603 1.00034 1.00236 1.21306 0.96571 0.98514 0.96672 1.23272 1.04212 0.89583 0.99537 1.20851 0.86589 0.93123 1.01269 1.98421 1.07959 1.98385 1.96173 1.20974 0.93417 0.97214 1.04056 1.19405 0.91776 0.95241 0.93827 1.24812 1.01310 1.01482 0.90951 1.86527 1.62800 1.49108 1.37685 0.94160 0.79257 0.74573 0.87969 1.21430 1.02461 0.89176 1.04613 0.85781 0.90706 0.90316 0.87485 0.86880 0.91110 0.90886 0.84593 0.84297 0.84617 0.84742 0.85234 0.87350 0.87707 0.82018 0.85895 0.74573 1.19730 1.22301 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.31 0.19 7.96 -79.60 -0.63 -0.45 16 3 C 0.15 0.37 5.93 22.56 0.13 0.50 16 4 C 0.02 0.13 4.86 22.58 0.11 0.24 16 5 O -0.65 -7.30 9.33 -60.81 -0.57 -7.87 16 6 S 2.57 25.87 5.02 -56.49 -0.28 25.58 16 7 O -0.96 -12.60 14.59 -118.57 -1.73 -14.33 16 8 O -0.96 -15.08 17.39 -118.57 -2.06 -17.14 16 9 C -0.61 -1.05 3.26 31.12 0.10 -0.94 16 10 H 0.17 -0.01 6.05 -2.39 -0.01 -0.02 16 11 C -0.12 0.15 7.50 31.12 0.23 0.38 16 12 C 0.08 -0.24 4.37 31.12 0.14 -0.11 16 13 H 0.11 -0.75 7.87 -2.39 -0.02 -0.77 16 14 O -0.37 0.43 10.25 -148.98 -1.53 -1.10 16 15 C 0.10 -0.35 5.90 71.24 0.42 0.07 16 16 C -0.10 0.11 5.51 -19.87 -0.11 0.00 16 17 C -0.11 0.24 9.70 22.27 0.22 0.46 16 18 C -0.13 0.33 10.05 22.27 0.22 0.55 16 19 C -0.12 0.22 10.05 22.27 0.22 0.45 16 20 C -0.14 0.14 10.05 22.27 0.22 0.36 16 21 C -0.11 0.06 9.70 22.27 0.22 0.28 16 22 C -0.13 0.11 7.47 31.12 0.23 0.34 16 23 C 0.01 0.09 5.58 22.39 0.12 0.22 16 24 Cl -0.04 -0.45 26.75 -2.72 -0.07 -0.52 16 25 C -0.14 -0.45 8.44 22.30 0.19 -0.26 16 26 C 0.00 0.00 5.38 -19.86 -0.11 -0.11 16 27 C -0.08 0.43 2.79 71.24 0.20 0.63 16 28 O -0.55 2.16 12.81 -148.98 -1.91 0.25 16 29 Si 0.74 -3.01 29.84 68.60 2.05 -0.97 16 30 C -0.16 0.28 8.67 22.36 0.19 0.47 16 31 H 0.12 -1.34 8.14 -2.39 -0.02 -1.36 16 32 H 0.07 -0.73 7.67 -2.39 -0.02 -0.75 16 33 H 0.08 -0.83 7.66 -2.39 -0.02 -0.85 16 34 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.11 -0.35 8.10 -2.39 -0.02 -0.37 16 36 H 0.07 -0.39 8.08 -2.39 -0.02 -0.41 16 37 H 0.07 -0.44 8.08 -2.39 -0.02 -0.46 16 38 H 0.14 -0.80 8.06 -2.91 -0.02 -0.83 16 39 H 0.14 -0.88 8.06 -2.91 -0.02 -0.91 16 40 H 0.14 -0.71 8.06 -2.91 -0.02 -0.73 16 41 H 0.13 -0.56 8.06 -2.91 -0.02 -0.58 16 42 H 0.13 -0.37 8.06 -2.91 -0.02 -0.39 16 43 H 0.11 -0.05 7.51 -2.38 -0.02 -0.07 16 44 H 0.10 -0.26 8.10 -2.39 -0.02 -0.28 16 45 H 0.16 0.03 4.85 -2.91 -0.01 0.01 16 46 H 0.12 -1.47 7.96 -2.39 -0.02 -1.48 16 47 H 0.40 -4.77 8.74 -74.06 -0.65 -5.42 16 48 H -0.27 0.28 7.11 99.48 0.71 0.99 16 49 H -0.30 -1.15 7.05 99.48 0.70 -0.45 16 50 H 0.18 -1.44 6.30 -2.91 -0.02 -1.46 16 Total: 0.00 -26.59 436.70 -2.28 -28.87 By element: Atomic # 1 Polarization: -17.29 SS G_CDS: 0.39 Total: -16.90 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 4.07 Total: 4.56 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -8.43 Total: -40.63 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.05 Total: -0.97 kcal Atomic # 16 Polarization: 25.87 SS G_CDS: -0.28 Total: 25.58 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.07 Total: -0.52 kcal Total: -26.59 -2.28 -28.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80432_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.117 kcal (2) G-P(sol) polarization free energy of solvation -26.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds